NO07G00480.3, NO07G00480.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00480.3
Unique NameNO07G00480.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1617
Alignment locationchr7:175203..177186 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:175203..177186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00480.3 vs.
Match: XP_024584019.1 (phosphatidylinositol phosphatase [Plasmopara halstedii]; CEG47650.1 phosphatidylinositol phosphatase [Plasmopara halstedii])

HSP 1 Score: 149.4 bits (376), Expect = 1.900e-32
Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query:   57 YLLFQKKLLPFRYARLAAKLFFWPTIPITILNRWSNYWTAIDSTTGRERGREGGSHPREGCISSYPSTLPSSPPFLSKKDTLIMGAAPLAALGHVESLRDLGVTGVINLCDEYAGPIRMYQRHGIEQLYLPTVDHFEPTISDLYRAVEFISLRHAKGEKCFVHCKAGHGRSAAVALSWLATQNPGVSIQLLNQRLGEKRKVRKTLYKQNCVKGFLREWGLQSKGVKK 284
            Y  FQ   LP R AR+AA+L+F+PT P+T L+R  NYWT +DS                     +    P S                   + HV++L   GV  VINLCDEYAGP + Y+RH I+QL LPTVDH EP+++ L  AV FI  +  +G + +VHCK G GRSAAV L WL         +  N  L EKR VRK LY Q  +  F  +  +  + +K+
Sbjct:   28 YTAFQLHFLPERLARVAARLYFYPTWPLTYLSRRKNYWTLVDSHV-------------------FVGAAPMS------------------FMPHVDALVSRGVRAVINLCDEYAGPEKQYRRHHIQQLRLPTVDHSEPSLAALEEAVAFIKSQKQQGVRTYVHCKGGTGRSAAVVLCWLVASREMTPREAQNY-LNEKRHVRKFLYLQPNILAFCNKLLMNKRSIKE 216          
The following BLAST results are available for this feature:
BLAST of NO07G00480.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024584019.11.900e-3239.21phosphatidylinositol phosphatase [Plasmopara halst... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00480NO07G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00480.3NO07G00480.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00480.3.cds1NO07G00480.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00480.3.cds2NO07G00480.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00480.3.cds3NO07G00480.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00480.3 ID=NO07G00480.3|Name=NO07G00480.3|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp
TGGGATTGGCTGATTTATCTGCGTGCGGCCCCCTCTGAGAGCATTTGGAG
GCTGATGTAGTGAGAGCACGGCCTCTCTGGTGACCATGCTATTGTCCCTG
TGGCATTTATGTGTCGAGTGGATGCAAAAGAGAGGGTGAGGGTTGAGTGG
ACGAATCTCGAGGTCGAGGGGGAGGCGGAAAATTATTTTGCCGGGTTTGA
AGCAAGCAAGTGTGCAAGCACGGATGTCTTTGAGCTATAGCATTGTTTTT
CCTTTCACAGTCATACGACAGGGCACCAGCTATAGGACCCAATCCTCCTC
CTTTTCTATCACCACCGTCTGCAGGCACCTTAAAAACCCTTGAGTCCCGG
TTGTCTCAACCTGTCCTTTTTTCCTCTCCTACAGGCAGCAAGGAACTGAA
GCTCCCTCCGCGTACACCACTGCCTCTTCCATTCACTCTTCACCGGAAGC
TGTCCACTAGCACGACAAGTAACACAGAAACTTCTGTCGGAGCAGCAGCT
TCCATGGGTTCCTTCGGCCCTGGTCGTAGCTCCTCGTCGGGAAACGCAAA
CAAGGCACTCTCCGATGCGCTCTCCAAGGGCAATGGCTTGCCAGGCGCAG
GTGCCTTGGCCCAAAACACGGCATGGCTCTGTATGGGTAAGCACACATAC
ACAGGTATGGACTCCTTCCCATCATCATCCAATCTCTCTCTCCCTCCCTC
CTCTCTCACCTCCAGGTATCTTCGGGTTCACCTACCTCCTGTTCCAAAAG
AAGCTTCTTCCCTTCCGGTACGCCCGCCTGGCGGCCAAGCTTTTTTTCTG
GCCCACCATACCTATCACCATATTGAATCGATGGAGCAACTATTGGACAG
CGATAGACAGTACGACAGGGAGGGAAAGAGGAAGGGAAGGAGGGTCGCAT
CCCCGCGAAGGCTGCATTTCCTCTTATCCCTCCACTCTCCCCTCATCCCC
CCCTTTCCTATCAAAAAAAGACACTCTCATCATGGGCGCGGCGCCTCTCG
CCGCTCTCGGTCACGTGGAGTCCTTGCGCGATCTAGGCGTGACGGGCGTC
ATAAATCTCTGCGACGAGTACGCAGGCCCTATCCGAATGTACCAACGCCA
CGGCATCGAGCAGCTCTACCTCCCCACGGTGGACCACTTCGAACCTACCA
TCTCCGACCTCTACCGCGCTGTGGAGTTCATCTCCCTGCGCCACGCCAAG
GGCGAGAAGTGCTTCGTGCACTGCAAAGCAGGGCATGGTCGCTCCGCTGC
AGTTGCCCTTTCTTGGCTGGCGACACAGAATCCAGGTGTAAGCATCCAAC
TCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAGTCCGCAAGACGCTGTAC
AAACAAAATTGTGTCAAAGGCTTCCTGAGGGAGTGGGGCTTGCAGTCCAA
GGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGAGAGGAAGGAGGGGTCAG
TGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGGGGAAGATTGCGATGACA
ACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAGGGAAGGGGGGATGGAAG
GACCGGGGCGGGAAGGAGGAGATGAATACGTGGGACATCATTGTTGAAAG
CAACGAACTGAACAGGC
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protein sequence of NO07G00480.3

>NO07G00480.3-protein ID=NO07G00480.3-protein|Name=NO07G00480.3|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MRSPRAMACQAQVPWPKTRHGSVWVSTHTQVWTPSHHHPISLSLPPLSPP
GIFGFTYLLFQKKLLPFRYARLAAKLFFWPTIPITILNRWSNYWTAIDST
TGRERGREGGSHPREGCISSYPSTLPSSPPFLSKKDTLIMGAAPLAALGH
VESLRDLGVTGVINLCDEYAGPIRMYQRHGIEQLYLPTVDHFEPTISDLY
RAVEFISLRHAKGEKCFVHCKAGHGRSAAVALSWLATQNPGVSIQLLNQR
LGEKRKVRKTLYKQNCVKGFLREWGLQSKGVKKGEVEMVERKEGSVEEEE
GGGGGRGKIAMTTRKKGQQQVVKGRGDGRTGAGRRR*
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mRNA from alignment at chr7:175203..177186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00480.3 ID=NO07G00480.3|Name=NO07G00480.3|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at chr7:175203..177186- (Nannochloropsis oceanica)
TGGGATTGGCTGATTTATCTGCGTGCGGCCCCCTCTGAGAGCATTTGGAG GCTGATGTAGTGAGAGCACGGCCTCTCTGGTGACCATGCTATTGTCCCTG TGGCATTTATGTGTCGAGTGGATGCAAAAGAGAGGGTGAGGGTTGAGTGG ACGAATCTCGAGGTCGAGGGGGAGGCGGAAAATTATTTTGCCGGGTTTGA AGCAAGCAAGTGTGCAAGCACGGATGTCTTTGAGCTATAGCATTGTTTTT CCTTTCACAGTCATACGACAGGGCACCAGCTATAGGACCCAATCCTCCTC CTTTTCTATCACCACCGTCTGCAGGCACCTTAAAAACCCTTGAGTCCCGG TTGTCTCAACCTGTCCTTTTTTCCTCTCCTACAGGCAGCAAGGAACTGAA GCTCCCTCCGCGTACACCACTGCCTCTTCCATTCACTCTTCACCGGAAGC TGTCCACTAGCACGACAAGTAACACAGAAACTTCTGTCGGAGCAGCAGCT TCCATGGGTTCCTTCGGCCCTGGTCGTAGCTCCTCGTCGGGAAACGCAAA CAAGGCACTCTCCGGTAGGCCATCCTCCTGCCTCCCCCCCCCTTCCTCAC CTCCCCGCCCTTTGCCCTCTATGCGTGTCGAGTCCTCATCCACATCACGT CTTTTCCTTTCCATATCCCTCATACACATACACAGATGCGCTCTCCAAGG GCAATGGCTTGCCAGGCGCAGGTGCCTTGGCCCAAAACACGGCATGGCTC TGTATGGGTAAGCACACATACACAGGTATGGACTCCTTCCCATCATCATC CAATCTCTCTCTCCCTCCCTCCTCTCTCACCTCCAGGTATCTTCGGGTTC ACCTACCTCCTGTTCCAAAAGAAGCTTCTTCCCTTCCGGTACGCCCGCCT GGCGGCCAAGCTTTTTTTCTGGCCCACCATACCTATCACCATATTGAATC GATGGAGCAACTATTGGACAGCGATAGACAGTACGACAGGGAGGGAAAGA GGAAGGGAAGGAGGGTCGCATCCCCGCGAAGGCTGCATTTCCTCTTATCC CTCCACTCTCCCCTCATCCCCCCCTTTCCTATCAAAAAAAGACACTCTCA TCATGGGCGCGGCGCCTCTCGCCGCTCTCGGTCACGTGGAGTCCTTGCGC GATCTAGGCGTGACGGGCGTCATAAATCTCTGCGACGAGTACGCAGGCCC TATCCGAATGTACCAACGGTGAGCTTCCCTCCCTCCCTCCCTCCTTCCCT CTCGCCGCCCGCCCATGCATCCCGTCCTAACCCCCTCTCTCTTCCTTTCC TTCTCCCCTTGTCAGCCACGGCATCGAGCAGCTCTACCTCCCCACGGTGG ACCACTTCGAACCTACCATCTCCGACCTCTACCGCGCTGTGGAGTTCATC TCCCTGCGCCACGCCAAGGGCGAGAAGTGCTTCGTGCACTGCAAAGCAGG GCATGGTCGCTCCGCTGCAGTTGCCCTTTCTTGGCTGGCGACACAGAATC CAGGTAAGCCCGTCAGCCAGCCCTCCCTCCCTCCCTTTACCCCTCCCTTC CTAAATGGGGCTTCAGCCAGAACAGAGGGCAGTCTTTCACTCACGCACTC GCCCCCCCCCCCCTTCCTTCCTCCCTTGCTGCCTCCCTCCTCCTTCCTTA AGGTGTAAGCATCCAACTCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAG TCCGCAAGACGCTGTACAAACAAAATTGTGTCAAAGGCTTCCTGAGGGAG TGGGGCTTGCAGTCCAAGGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGA GAGGAAGGAGGGGTCAGTGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGG GGAAGATTGCGATGACAACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAG GGAAGGGGGGATGGAAGGACCGGGGCGGGAAGGAGGAGATGAATACGTGG GACATCATTGTTGAAAGCAACGAACTGAACAGGC
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Coding sequence (CDS) from alignment at chr7:175203..177186-

>NO07G00480.3 ID=NO07G00480.3|Name=NO07G00480.3|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr7:175203..177186- (Nannochloropsis oceanica)
ATGCGCTCTCCAAGGGCAATGGCTTGCCAGGCGCAGGTGCCTTGGCCCAA
AACACGGCATGGCTCTGTATGGGTAAGCACACATACACAGGTATGGACTC
CTTCCCATCATCATCCAATCTCTCTCTCCCTCCCTCCTCTCTCACCTCCA
GGTATCTTCGGGTTCACCTACCTCCTGTTCCAAAAGAAGCTTCTTCCCTT
CCGGTACGCCCGCCTGGCGGCCAAGCTTTTTTTCTGGCCCACCATACCTA
TCACCATATTGAATCGATGGAGCAACTATTGGACAGCGATAGACAGTACG
ACAGGGAGGGAAAGAGGAAGGGAAGGAGGGTCGCATCCCCGCGAAGGCTG
CATTTCCTCTTATCCCTCCACTCTCCCCTCATCCCCCCCTTTCCTATCAA
AAAAAGACACTCTCATCATGGGCGCGGCGCCTCTCGCCGCTCTCGGTCAC
GTGGAGTCCTTGCGCGATCTAGGCGTGACGGGCGTCATAAATCTCTGCGA
CGAGTACGCAGGCCCTATCCGAATGTACCAACGCCACGGCATCGAGCAGC
TCTACCTCCCCACGGTGGACCACTTCGAACCTACCATCTCCGACCTCTAC
CGCGCTGTGGAGTTCATCTCCCTGCGCCACGCCAAGGGCGAGAAGTGCTT
CGTGCACTGCAAAGCAGGGCATGGTCGCTCCGCTGCAGTTGCCCTTTCTT
GGCTGGCGACACAGAATCCAGGTGTAAGCATCCAACTCCTCAACCAGAGG
CTGGGGGAAAAGCGCAAAGTCCGCAAGACGCTGTACAAACAAAATTGTGT
CAAAGGCTTCCTGAGGGAGTGGGGCTTGCAGTCCAAGGGCGTGAAGAAGG
GAGAAGTCGAGATGGTGGAGAGGAAGGAGGGGTCAGTGGAGGAGGAGGAG
GGAGGAGGAGGAGGGAGGGGGAAGATTGCGATGACAACGAGGAAAAAGGG
GCAGCAGCAGGTCGTGAAGGGAAGGGGGGATGGAAGGACCGGGGCGGGAA
GGAGGAGATGA
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Synonyms
Publications