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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:169792..172295 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00460.1 vs.
Match: CBJ32730.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 310.1 bits (793), Expect = 1.300e-80 Identity = 186/452 (41.15%), Postives = 267/452 (59.07%), Query Frame = 0
Query: 35 SAVGQEDEGEQKL--QRVRLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTL--CKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHVEG-GVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNEKSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLR----EKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEGGGEGGGR 478
+AVG + +L RV L+Y P +QRF K ++FTQQ+SH+Y RL ++ + +A+ +WG G + +++++ +G V V+GT +K M LRPS+L+E+R++ + A+ G ++ S +D+LVLEDESGRVS++GP + V+GLV+AVKG V G + V D C AG+P V + K+ + D L + +L+++V G++G + +RIGR+IV GD +A LL K + A+QQ A P K LD +L LA+A P+DVMPG DP+N TLPQQP+HPCLL +A+R+ + V NP+EA IG +R+FLG SGQ DMARY TP + A LR +E+ L+WRH+APTAP+TL CYPF +DPFV+ P ++F GNQP FATS+LEG GR
Sbjct: 22 TAVGADGARGDELGAPRVELAYEPRYQRFIVKKKSFTQQFSHVYNKRLLALKGAVRQAAEKRWGKEGEGGGVKFVDRLVNMREGDEWV-VIGTTYKAMKLRPSILNEFREDRGISMAVVAPVG---SFTSEDDSLVLEDESGRVSISGPGIQSSSLVSGLVIAVKGTVTASGEMLVDDWCPAGIPPP-----------------------VPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGA-LKRVTNPHEAKIG-ERVFLGSSGQPLLDMARYTTPEAEADKDAKPAC--LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSILEGADGHKGR 442
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00460.1 ID=NO07G00460.1|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp ACAACAGAGAGGAGCAAGCAACTTTCCATCTACGTAGAACGCTGCCTGTA AGAACCATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAG CATCAGAATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAG AAAACCCGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAG CGGGTGCGCCTATCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAAC CCGAACATTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGAC TGATGCGGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGA GGGATGGCGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGC GGGAACGGTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGC CGAGCCTGTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGGTGCCTTG CAGCCCGCCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCCT TGTCCTGGAAGATGAATCTGGACGGGTGAGTCTCGCCGGACCTTCCTTGG CCGTGGGGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGTG GAAGGGGGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTTC CCAGGAAGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAAG GAGGGGGCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGGGTTTAAGCTG AATGAGAAGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATGTGCA AGGCCACGTGGGCTCAGATGCCCACAAGCGGGATGTCGTCTCCCGCATCG GCCGCCTCATTGTCGCGGGCGACCTCCTCGCGCCCTTCGACGACTCCCTC CTCCGGGAGAAGCACATGACTGCCAAGCAACAGGAGGATTTCGCCCTCCC TTTCAAGCACCTCGACCTCGTCCTCACGCAGCTCGCCTCTGCAGTGCCTA TGGACGTTATGCCAGGCGCCGACGACCCCTCGAACAGCACGCTCCCGCAG CAGCCCATCCATCCCTGCCTCCTCCCCCACGCCGCGCGCTACGCCTCCTC CTTCCATACTGTGCCAAACCCCTATGAGGCATGGATAGGAGGCGATCGTC TCTTCCTCGGAGGCTCGGGGCAAGTGCCCGAGGACATGGCCAGGTACATG ACCCCTCCCTCCCTCCCGCCCTCCCCCACCTCCTCCGCCGCGCGGGCGTT GCGGTTGATGGAAAAGACCCTCGAGTGGCGTCATCTGGCTCCCACTGCCC CGGACACGCTGGCTTGCTACCCCTTTTGTGACGACGATCCATTCGTCCTA CCCTCCCTCCCTCACGTGTACTTTGTGGGCAATCAGCCGGCGTTTGCGAC GTCCTTGCTGGAGGGCGGGGGGGAGGGCGGGGGGAGGGCGGGGGGGAGGG CGGGGGGGAGGGCGGGGGGGAGGGAGGGCGTGTGCGGGTTGTGTGCGTGC CATCATTCGCAGAGACCGGGACGGTGGTATTACTGGAGTTGA back to topprotein sequence of NO07G00460.1 >NO07G00460.1-protein ID=NO07G00460.1-protein|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp MAGGGDVVDVPSGSSIRITTAMLDNILRNGEENPSAVGQEDEGEQKLQRV RLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGM APTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQP AAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHVEG GVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNE KSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLR EKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQP IHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTP PSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPS LPHVYFVGNQPAFATSLLEGGGEGGGRAGGRAGGRAGGREGVCGLCACHH SQRPGRWYYWS* back to topmRNA from alignment at chr7:169792..172295+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00460.1 ID=NO07G00460.1|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp|location=Sequence derived from alignment at chr7:169792..172295+ (Nannochloropsis oceanica) ACAACAGAGAGGAGCAAGCAACTTTCCATCTACGTAGAACGCTGCCTGTA
AGAACCATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAG
CATCAGAATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAG
AAAACCCGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAG
CGGGTGCGCCTATCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAAC
CCGAACATTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGAC
TGATGCGGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGA
GGGATGGCGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGC
GGGAACGGTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGC
CGAGCCTGTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGGTGAGTAG
AGGGAAGGCTGGTAGGGAGAGAGGGAGGAAGGGGAGAAGGAGCGTCATGA
AGAGACAAGTGCGATACGTGCTACTTTTTGTTATTGACTGAAAAAGCAAT
CCACGTGTACAAGCGGATCAAAGCGAGTGTAATTGAAAATGAATAAGAAG
ACACCCCGTCACACCCGCCTTCATTCCGTCACTCACACTTCGATACCAGC
TACCTTAAACTCCTCCCCTCCCACACCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCTGCAGGTGCCTT
GCAGCCCGCCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCC
TTGTCCTGGAAGATGAATCTGGACGGGTGAGTCTCGCCGGACCTTCCTTG
GCCGTGGGGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGT
GGAAGGGGGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTT
CCCAGGAAGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAA
GGAGGGGGCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGGTGAGTGCTT
GCAGAGGAGGGAGGGAAGGGTGGCAGGAGGGAGGGAGGGAGGGAGGGAGG
CAGGGAGGAAGAGAGGGAAGGAGGGAAGGGATTATGTTATGTTTCATTTC
TGTGTTTTTCAACCATCTTTCCCGCATTTACTCGTTTATGCAGGGTTTAA
GCTGAATGAGAAGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATG
TGCAAGGCCACGTGGGCTCAGATGCCCACAAGCGGGATGTAAGTTAATGA
ACAAACCCTCCCTCTCTCCCTCCCTCCCTCCTTTCCTCCCTAATTGTTGG
TCTTTTCTTTCTTTTCCTGAGTTTTCTCTTCCTCCCTCCCTCCCTCCCTC
CCTCCCTCAGGTCGTCTCCCGCATCGGCCGCCTCATTGTCGCGGGCGACC
TCCTCGCGCCCTTCGACGACTCCCTCCTCCGGGAGAAGCACATGACTGCC
AAGCAACAGGAGGATTTCGCCCTCCCTTTCAAGCACCTCGACCTCGTCCT
CACGCAGGTCCGGCGCCAGGAGAGGAGGGAGGCAGTGAGGGAGGGAGGGA
GGGGAAAACGAGGATGTACGATGTTTTTTGTTTTGGCTTGTTCACATTGC
ATGAAACACACATAGACCCGACCCTCCATCCCTCCCCCCTCCTCCTCCCA
CCTCTTGATCCATTTAACCTCCCGCGCATTACCATCCTCCCAACCTCCCT
CCTCCTTCAGCTCGCCTCTGCAGTGCCTATGGACGTTATGCCAGGCGCCG
ACGACCCCTCGAACAGCACGCTCCCGCAGCAGGTACGGTGTGACTGTATC
CTTCCTCCCTCCCTCCCTTCCTCACTCCCTCACGTTCTATCCCCACCCCC
CTCCTTCTTCCCTCACCTTCCCCCCTTCCCCTCCCTACCCCCCTCCCTCC
CTCCCTCGCCCCCAGCCCATCCATCCCTGCCTCCTCCCCCACGCCGCGCG
CTACGCCTCCTCCTTCCATACTGTGCCAAACCCCTATGAGGCATGGATAG
GAGGCGATCGTCTCTTCCTCGGAGGCTCGGGGCAAGTGCCCGAGGACATG
GCCAGGTACATGACCCCTCCCTCCCTCCCGCCCTCCCCCACCTCCTCCGC
CGCGCGGGCGTTGCGGTTGATGGAAAAGACCCTCGAGTGGCGTCATCTGG
CTCCCACTGCCCCGGACACGCTGGCTTGCTACCCCTTTTGTGACGACGAT
CCATTCGTCCTACCCTCCCTCCCTCACGTGTACTTTGTGGGCAATCAGCC
GGCGTTTGCGACGTCCTTGCTGGAGGGCGGGGGGGAGGGCGGGGGGAGGG
CGGGGGGGAGGGCGGGGGGGAGGGCGGGGGGGAGGGAGGGCGTGTGCGGG
TTGTGTGCGTGCCATCATTCGCAGAGACCGGGACGGTGGTATTACTGGAG
TTGA back to topCoding sequence (CDS) from alignment at chr7:169792..172295+ >NO07G00460.1 ID=NO07G00460.1|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr7:169792..172295+ (Nannochloropsis oceanica) ATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAGCATCAG AATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAGAAAACC CGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAGCGGGTG CGCCTATCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAACCCGAAC ATTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGACTGATGC GGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGAGGGATG GCGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGCGGGAAC GGTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGCCGAGCC TGTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGGTGCCTTGCAGCCC GCCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCCTTGTCCT GGAAGATGAATCTGGACGGGTGAGTCTCGCCGGACCTTCCTTGGCCGTGG GGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGTGGAAGGG GGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTTCCCAGGA AGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAAGGAGGGG GCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGGGTTTAAGCTGAATGAG AAGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATGTGCAAGGCCA CGTGGGCTCAGATGCCCACAAGCGGGATGTCGTCTCCCGCATCGGCCGCC TCATTGTCGCGGGCGACCTCCTCGCGCCCTTCGACGACTCCCTCCTCCGG GAGAAGCACATGACTGCCAAGCAACAGGAGGATTTCGCCCTCCCTTTCAA GCACCTCGACCTCGTCCTCACGCAGCTCGCCTCTGCAGTGCCTATGGACG TTATGCCAGGCGCCGACGACCCCTCGAACAGCACGCTCCCGCAGCAGCCC ATCCATCCCTGCCTCCTCCCCCACGCCGCGCGCTACGCCTCCTCCTTCCA TACTGTGCCAAACCCCTATGAGGCATGGATAGGAGGCGATCGTCTCTTCC TCGGAGGCTCGGGGCAAGTGCCCGAGGACATGGCCAGGTACATGACCCCT CCCTCCCTCCCGCCCTCCCCCACCTCCTCCGCCGCGCGGGCGTTGCGGTT GATGGAAAAGACCCTCGAGTGGCGTCATCTGGCTCCCACTGCCCCGGACA CGCTGGCTTGCTACCCCTTTTGTGACGACGATCCATTCGTCCTACCCTCC CTCCCTCACGTGTACTTTGTGGGCAATCAGCCGGCGTTTGCGACGTCCTT GCTGGAGGGCGGGGGGGAGGGCGGGGGGAGGGCGGGGGGGAGGGCGGGGG GGAGGGCGGGGGGGAGGGAGGGCGTGTGCGGGTTGTGTGCGTGCCATCAT TCGCAGAGACCGGGACGGTGGTATTACTGGAGTTGA back to top
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