NO07G00460.1, NO07G00460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00460.1
Unique NameNO07G00460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1592
Alignment locationchr7:169792..172295 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:169792..172295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00460.1 vs.
Match: CBJ32730.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 310.1 bits (793), Expect = 1.300e-80
Identity = 186/452 (41.15%), Postives = 267/452 (59.07%), Query Frame = 0
Query:   35 SAVGQEDEGEQKL--QRVRLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGMAPTL--CKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQPAAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHVEG-GVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNEKSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLR----EKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQPIHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTPPSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFVGNQPAFATSLLEGGGEGGGR 478
            +AVG +     +L   RV L+Y P +QRF  K ++FTQQ+SH+Y  RL  ++  +  +A+ +WG  G    +    +++++ +G   V V+GT +K M LRPS+L+E+R++  +  A+    G   ++ S +D+LVLEDESGRVS++GP +     V+GLV+AVKG V   G + V D C AG+P                         V  +   K+  + D L + +L+++V G++G    +    +RIGR+IV GD +A     LL      K + A+QQ   A P K LD +L  LA+A P+DVMPG  DP+N TLPQQP+HPCLL +A+R+ +    V NP+EA IG +R+FLG SGQ   DMARY TP +        A   LR +E+ L+WRH+APTAP+TL CYPF  +DPFV+   P ++F GNQP FATS+LEG     GR
Sbjct:   22 TAVGADGARGDELGAPRVELAYEPRYQRFIVKKKSFTQQFSHVYNKRLLALKGAVRQAAEKRWGKEGEGGGVKFVDRLVNMREGDEWV-VIGTTYKAMKLRPSILNEFREDRGISMAVVAPVG---SFTSEDDSLVLEDESGRVSISGPGIQSSSLVSGLVIAVKGTVTASGEMLVDDWCPAGIPPP-----------------------VPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGA-LKRVTNPHEAKIG-ERVFLGSSGQPLLDMARYTTPEAEADKDAKPAC--LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSILEGADGHKGR 442          
The following BLAST results are available for this feature:
BLAST of NO07G00460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ32730.11.300e-8041.15conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00460NO07G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00460.1NO07G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00460.1.cds1NO07G00460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00460.1.cds2NO07G00460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00460.1.cds3NO07G00460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00460.1.cds4NO07G00460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00460.1.cds5NO07G00460.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00460.1.cds6NO07G00460.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00460.1 ID=NO07G00460.1|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp
ACAACAGAGAGGAGCAAGCAACTTTCCATCTACGTAGAACGCTGCCTGTA
AGAACCATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAG
CATCAGAATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAG
AAAACCCGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAG
CGGGTGCGCCTATCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAAC
CCGAACATTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGAC
TGATGCGGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGA
GGGATGGCGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGC
GGGAACGGTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGC
CGAGCCTGTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGGTGCCTTG
CAGCCCGCCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCCT
TGTCCTGGAAGATGAATCTGGACGGGTGAGTCTCGCCGGACCTTCCTTGG
CCGTGGGGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGTG
GAAGGGGGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTTC
CCAGGAAGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAAG
GAGGGGGCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGGGTTTAAGCTG
AATGAGAAGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATGTGCA
AGGCCACGTGGGCTCAGATGCCCACAAGCGGGATGTCGTCTCCCGCATCG
GCCGCCTCATTGTCGCGGGCGACCTCCTCGCGCCCTTCGACGACTCCCTC
CTCCGGGAGAAGCACATGACTGCCAAGCAACAGGAGGATTTCGCCCTCCC
TTTCAAGCACCTCGACCTCGTCCTCACGCAGCTCGCCTCTGCAGTGCCTA
TGGACGTTATGCCAGGCGCCGACGACCCCTCGAACAGCACGCTCCCGCAG
CAGCCCATCCATCCCTGCCTCCTCCCCCACGCCGCGCGCTACGCCTCCTC
CTTCCATACTGTGCCAAACCCCTATGAGGCATGGATAGGAGGCGATCGTC
TCTTCCTCGGAGGCTCGGGGCAAGTGCCCGAGGACATGGCCAGGTACATG
ACCCCTCCCTCCCTCCCGCCCTCCCCCACCTCCTCCGCCGCGCGGGCGTT
GCGGTTGATGGAAAAGACCCTCGAGTGGCGTCATCTGGCTCCCACTGCCC
CGGACACGCTGGCTTGCTACCCCTTTTGTGACGACGATCCATTCGTCCTA
CCCTCCCTCCCTCACGTGTACTTTGTGGGCAATCAGCCGGCGTTTGCGAC
GTCCTTGCTGGAGGGCGGGGGGGAGGGCGGGGGGAGGGCGGGGGGGAGGG
CGGGGGGGAGGGCGGGGGGGAGGGAGGGCGTGTGCGGGTTGTGTGCGTGC
CATCATTCGCAGAGACCGGGACGGTGGTATTACTGGAGTTGA
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protein sequence of NO07G00460.1

>NO07G00460.1-protein ID=NO07G00460.1-protein|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MAGGGDVVDVPSGSSIRITTAMLDNILRNGEENPSAVGQEDEGEQKLQRV
RLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGM
APTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQP
AAGPNTNYVSGEDTLVLEDESGRVSLAGPSLAVGEFVTGLVVAVKGHVEG
GVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNE
KSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLR
EKHMTAKQQEDFALPFKHLDLVLTQLASAVPMDVMPGADDPSNSTLPQQP
IHPCLLPHAARYASSFHTVPNPYEAWIGGDRLFLGGSGQVPEDMARYMTP
PSLPPSPTSSAARALRLMEKTLEWRHLAPTAPDTLACYPFCDDDPFVLPS
LPHVYFVGNQPAFATSLLEGGGEGGGRAGGRAGGRAGGREGVCGLCACHH
SQRPGRWYYWS*
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mRNA from alignment at chr7:169792..172295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00460.1 ID=NO07G00460.1|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp|location=Sequence derived from alignment at chr7:169792..172295+ (Nannochloropsis oceanica)
ACAACAGAGAGGAGCAAGCAACTTTCCATCTACGTAGAACGCTGCCTGTA AGAACCATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAG CATCAGAATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAG AAAACCCGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAG CGGGTGCGCCTATCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAAC CCGAACATTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGAC TGATGCGGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGA GGGATGGCGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGC GGGAACGGTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGC CGAGCCTGTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGGTGAGTAG AGGGAAGGCTGGTAGGGAGAGAGGGAGGAAGGGGAGAAGGAGCGTCATGA AGAGACAAGTGCGATACGTGCTACTTTTTGTTATTGACTGAAAAAGCAAT CCACGTGTACAAGCGGATCAAAGCGAGTGTAATTGAAAATGAATAAGAAG ACACCCCGTCACACCCGCCTTCATTCCGTCACTCACACTTCGATACCAGC TACCTTAAACTCCTCCCCTCCCACACCCTCCCTCCCTCCCTCCCTCCCTC CCTCCCTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCTGCAGGTGCCTT GCAGCCCGCCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCC TTGTCCTGGAAGATGAATCTGGACGGGTGAGTCTCGCCGGACCTTCCTTG GCCGTGGGGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGT GGAAGGGGGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTT CCCAGGAAGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAA GGAGGGGGCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGGTGAGTGCTT GCAGAGGAGGGAGGGAAGGGTGGCAGGAGGGAGGGAGGGAGGGAGGGAGG CAGGGAGGAAGAGAGGGAAGGAGGGAAGGGATTATGTTATGTTTCATTTC TGTGTTTTTCAACCATCTTTCCCGCATTTACTCGTTTATGCAGGGTTTAA GCTGAATGAGAAGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATG TGCAAGGCCACGTGGGCTCAGATGCCCACAAGCGGGATGTAAGTTAATGA ACAAACCCTCCCTCTCTCCCTCCCTCCCTCCTTTCCTCCCTAATTGTTGG TCTTTTCTTTCTTTTCCTGAGTTTTCTCTTCCTCCCTCCCTCCCTCCCTC CCTCCCTCAGGTCGTCTCCCGCATCGGCCGCCTCATTGTCGCGGGCGACC TCCTCGCGCCCTTCGACGACTCCCTCCTCCGGGAGAAGCACATGACTGCC AAGCAACAGGAGGATTTCGCCCTCCCTTTCAAGCACCTCGACCTCGTCCT CACGCAGGTCCGGCGCCAGGAGAGGAGGGAGGCAGTGAGGGAGGGAGGGA GGGGAAAACGAGGATGTACGATGTTTTTTGTTTTGGCTTGTTCACATTGC ATGAAACACACATAGACCCGACCCTCCATCCCTCCCCCCTCCTCCTCCCA CCTCTTGATCCATTTAACCTCCCGCGCATTACCATCCTCCCAACCTCCCT CCTCCTTCAGCTCGCCTCTGCAGTGCCTATGGACGTTATGCCAGGCGCCG ACGACCCCTCGAACAGCACGCTCCCGCAGCAGGTACGGTGTGACTGTATC CTTCCTCCCTCCCTCCCTTCCTCACTCCCTCACGTTCTATCCCCACCCCC CTCCTTCTTCCCTCACCTTCCCCCCTTCCCCTCCCTACCCCCCTCCCTCC CTCCCTCGCCCCCAGCCCATCCATCCCTGCCTCCTCCCCCACGCCGCGCG CTACGCCTCCTCCTTCCATACTGTGCCAAACCCCTATGAGGCATGGATAG GAGGCGATCGTCTCTTCCTCGGAGGCTCGGGGCAAGTGCCCGAGGACATG GCCAGGTACATGACCCCTCCCTCCCTCCCGCCCTCCCCCACCTCCTCCGC CGCGCGGGCGTTGCGGTTGATGGAAAAGACCCTCGAGTGGCGTCATCTGG CTCCCACTGCCCCGGACACGCTGGCTTGCTACCCCTTTTGTGACGACGAT CCATTCGTCCTACCCTCCCTCCCTCACGTGTACTTTGTGGGCAATCAGCC GGCGTTTGCGACGTCCTTGCTGGAGGGCGGGGGGGAGGGCGGGGGGAGGG CGGGGGGGAGGGCGGGGGGGAGGGCGGGGGGGAGGGAGGGCGTGTGCGGG TTGTGTGCGTGCCATCATTCGCAGAGACCGGGACGGTGGTATTACTGGAG TTGA
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Coding sequence (CDS) from alignment at chr7:169792..172295+

>NO07G00460.1 ID=NO07G00460.1|Name=NO07G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr7:169792..172295+ (Nannochloropsis oceanica)
ATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAGCATCAG
AATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAGAAAACC
CGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAGCGGGTG
CGCCTATCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAACCCGAAC
ATTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGACTGATGC
GGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGAGGGATG
GCGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGCGGGAAC
GGTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGCCGAGCC
TGTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGGTGCCTTGCAGCCC
GCCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCCTTGTCCT
GGAAGATGAATCTGGACGGGTGAGTCTCGCCGGACCTTCCTTGGCCGTGG
GGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGTGGAAGGG
GGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTTCCCAGGA
AGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAAGGAGGGG
GCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGGGTTTAAGCTGAATGAG
AAGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATGTGCAAGGCCA
CGTGGGCTCAGATGCCCACAAGCGGGATGTCGTCTCCCGCATCGGCCGCC
TCATTGTCGCGGGCGACCTCCTCGCGCCCTTCGACGACTCCCTCCTCCGG
GAGAAGCACATGACTGCCAAGCAACAGGAGGATTTCGCCCTCCCTTTCAA
GCACCTCGACCTCGTCCTCACGCAGCTCGCCTCTGCAGTGCCTATGGACG
TTATGCCAGGCGCCGACGACCCCTCGAACAGCACGCTCCCGCAGCAGCCC
ATCCATCCCTGCCTCCTCCCCCACGCCGCGCGCTACGCCTCCTCCTTCCA
TACTGTGCCAAACCCCTATGAGGCATGGATAGGAGGCGATCGTCTCTTCC
TCGGAGGCTCGGGGCAAGTGCCCGAGGACATGGCCAGGTACATGACCCCT
CCCTCCCTCCCGCCCTCCCCCACCTCCTCCGCCGCGCGGGCGTTGCGGTT
GATGGAAAAGACCCTCGAGTGGCGTCATCTGGCTCCCACTGCCCCGGACA
CGCTGGCTTGCTACCCCTTTTGTGACGACGATCCATTCGTCCTACCCTCC
CTCCCTCACGTGTACTTTGTGGGCAATCAGCCGGCGTTTGCGACGTCCTT
GCTGGAGGGCGGGGGGGAGGGCGGGGGGAGGGCGGGGGGGAGGGCGGGGG
GGAGGGCGGGGGGGAGGGAGGGCGTGTGCGGGTTGTGTGCGTGCCATCAT
TCGCAGAGACCGGGACGGTGGTATTACTGGAGTTGA
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Synonyms
Publications