NO07G00350.1, NO07G00350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00350.1
Unique NameNO07G00350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1807
Alignment locationchr7:137350..139156 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:137350..139156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00350.1 vs.
Match: EWM27351.1 (hypothetical protein Naga_100394g3 [Nannochloropsis gaditana])

HSP 1 Score: 129.4 bits (324), Expect = 1.700e-26
Identity = 95/244 (38.93%), Postives = 135/244 (55.33%), Query Frame = 0
Query:   50 PAGEKGREGGTDPLRATDEALTGAAGWVKGKAAGAWQTVKAGTVSGGHKTAEGLGTVKDKMGEALGVAREKVASATHRVA-KTQEPKSPVRERAAQEFHKKKEEGKETTQAMKAQVVDKAEGATDVTKVKIGEVAARGSEAGAQAQERVNKMGHRVAEHAE-------AMENKVQSMAQ-----------ATKQQGQSAVDRAKET---AQEAAGTTAEHMGDAAGKVSGFMEGMAGEVQHRSK 272
            P  E+G+   T PL + +E  TGA GWVK K AGAW+ VK+GT +G  KT+EGLG++K K+G+A    R K     H VA KTQE  SP++ERA Q F  +KE+GK T  ++K  VV+K EG TD  K +  E   +G E   + + +  +   ++ E AE       AM  K+++  Q           A K + Q   ++A+ET   AQE A   AE  G A G+  G+ EG+A EV+ + +
Sbjct:   20 PQTEQGKV--TRPLESAEENATGAVGWVKDKMAGAWKAVKSGTTTGTQKTSEGLGSMKSKVGDAFKQGRNKAVDTAHEVAEKTQEVASPIQERATQGFDTEKEKGKGTIGSVKDHVVEKIEGTTDAAKARAQEALDQGREYEKEVESKARETEQKMEEKAEAAKTGFAAMGEKIKAAGQAGKGRLGNAMNAWKPKAQETTEKAQETAERAQETAEDVAEKAGRATGQAKGWAEGVADEVKEKGQ 261          
The following BLAST results are available for this feature:
BLAST of NO07G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27351.11.700e-2638.93hypothetical protein Naga_100394g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00350NO07G00350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00350.1NO07G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00350.1.cds1NO07G00350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00350.1 ID=NO07G00350.1|Name=NO07G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp
CTGCAGAACAGAACTTCGTCCCGGACGCAGATAAAAATCAAGGCTGATTA
AAGCACCACGCCAATATGGACAAAACATTTGCCGCTACGCAACACCTGCA
GCAGCCACAGGCCTCGCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGG
GTGATAGCCTGATGGCGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGT
CCGGCCACGACTCCGGCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCC
CTTGCGTGCGACGGATGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGG
GAAAGGCGGCTGGGGCGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGA
GGGCACAAGACGGCGGAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGA
AGCTTTGGGTGTGGCCCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGG
CGAAGACCCAGGAACCCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAA
TTTCACAAGAAGAAAGAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGC
ACAGGTAGTGGACAAGGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGA
TTGGAGAAGTGGCGGCGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAG
AGGGTGAATAAAATGGGACATCGTGTGGCAGAGCACGCTGAGGCGATGGA
AAATAAAGTCCAGTCAATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTG
CCGTGGATCGAGCCAAGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCA
GAGCACATGGGGGATGCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCAT
GGCTGGCGAAGTGCAGCACCGGTCGAAGGAAGAGTAAAGACGACAAGGCG
GACCCGTACCGATAGGGTTCAGTGAACTTGAAGGAGCGAGTGGCATCAAG
ATACGTGGACGGACGAAGAAAGGAGGAGGAGAACGAGTCAAGGCGTTGGC
ACGTGACTTGGCTACCTTTACCTTGGACATGTCGCGAGCGTGTGTGGTAT
GAGGGGAGGAGGATAGAGGGATATTATCTATTATTGTAAAAACAGTAAAT
TGGATGAAGGAGATAATGAAGGATACGTATGCACGCATTAGAAAGGGGGA
AGAGAGAGTGTCAAGGCGTCGGCGCGTGACTTGGCTACCTTGGACATGCC
GTGAGCGTGTGGGGTAGGAGAGGAAATGGATAGGAGGATTTTATCTCTTG
TTATGAGAGCAGTTAATTGGATGAAGGATATTATGACGGAAACATATGCC
CGCATGAGGAGATAGACTAGATTGTGAAGGAATGAATGCCTGTCCTCTTG
CTGCAGGGTAGGCAAAATCAGAGGGCAAGAAATGTTCGCTTAGACGTGGC
TGGATTTTTACGGAGCCCATTCATGCAAAAAATTCTATGTTCAAGCCGAC
AGGTTATTTACACGCCCTCTGTGGTAGCTCATCGGGCCGCTGTCCAACGG
TAATCGGCGCGCAAGAAAAAGCAGCGGGTGTAAGTGATTTTTTTTTTTTT
TTAAAAAACATGAAGGGACCATGTAGACAGAAATTCAGAGAGATATCAAA
TCAGAGCAGTGTCGGTAGAGTATATGGAAAAATAAAAGACGCCGCGATCG
AGTTCTGGTTGGTGCGTGTGCCGTGTGGGTAAACGATTACGTTCCTATCC
CTCGAGAAATGTCAGAAACCGGCTCTATAAAATTGCGGAGCATGAACCAA
AAAAAAATATGAGTGGGTATCATTTCCTTGACCAAGTGGAAAGCGAACCA
ATTGTTG
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protein sequence of NO07G00350.1

>NO07G00350.1-protein ID=NO07G00350.1-protein|Name=NO07G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MDKTFAATQHLQQPQASQKSQGRKEGGLGDSLMAEEEFVVPPEGRPATTP
AGEKGREGGTDPLRATDEALTGAAGWVKGKAAGAWQTVKAGTVSGGHKTA
EGLGTVKDKMGEALGVAREKVASATHRVAKTQEPKSPVRERAAQEFHKKK
EEGKETTQAMKAQVVDKAEGATDVTKVKIGEVAARGSEAGAQAQERVNKM
GHRVAEHAEAMENKVQSMAQATKQQGQSAVDRAKETAQEAAGTTAEHMGD
AAGKVSGFMEGMAGEVQHRSKEE*
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mRNA from alignment at chr7:137350..139156+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00350.1 ID=NO07G00350.1|Name=NO07G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp|location=Sequence derived from alignment at chr7:137350..139156+ (Nannochloropsis oceanica)
CTGCAGAACAGAACTTCGTCCCGGACGCAGATAAAAATCAAGGCTGATTA AAGCACCACGCCAATATGGACAAAACATTTGCCGCTACGCAACACCTGCA GCAGCCACAGGCCTCGCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGG GTGATAGCCTGATGGCGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGT CCGGCCACGACTCCGGCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCC CTTGCGTGCGACGGATGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGG GAAAGGCGGCTGGGGCGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGA GGGCACAAGACGGCGGAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGA AGCTTTGGGTGTGGCCCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGG CGAAGACCCAGGAACCCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAA TTTCACAAGAAGAAAGAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGC ACAGGTAGTGGACAAGGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGA TTGGAGAAGTGGCGGCGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAG AGGGTGAATAAAATGGGACATCGTGTGGCAGAGCACGCTGAGGCGATGGA AAATAAAGTCCAGTCAATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTG CCGTGGATCGAGCCAAGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCA GAGCACATGGGGGATGCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCAT GGCTGGCGAAGTGCAGCACCGGTCGAAGGAAGAGTAAAGACGACAAGGCG GACCCGTACCGATAGGGTTCAGTGAACTTGAAGGAGCGAGTGGCATCAAG ATACGTGGACGGACGAAGAAAGGAGGAGGAGAACGAGTCAAGGCGTTGGC ACGTGACTTGGCTACCTTTACCTTGGACATGTCGCGAGCGTGTGTGGTAT GAGGGGAGGAGGATAGAGGGATATTATCTATTATTGTAAAAACAGTAAAT TGGATGAAGGAGATAATGAAGGATACGTATGCACGCATTAGAAAGGGGGA AGAGAGAGTGTCAAGGCGTCGGCGCGTGACTTGGCTACCTTGGACATGCC GTGAGCGTGTGGGGTAGGAGAGGAAATGGATAGGAGGATTTTATCTCTTG TTATGAGAGCAGTTAATTGGATGAAGGATATTATGACGGAAACATATGCC CGCATGAGGAGATAGACTAGATTGTGAAGGAATGAATGCCTGTCCTCTTG CTGCAGGGTAGGCAAAATCAGAGGGCAAGAAATGTTCGCTTAGACGTGGC TGGATTTTTACGGAGCCCATTCATGCAAAAAATTCTATGTTCAAGCCGAC AGGTTATTTACACGCCCTCTGTGGTAGCTCATCGGGCCGCTGTCCAACGG TAATCGGCGCGCAAGAAAAAGCAGCGGGTGTAAGTGATTTTTTTTTTTTT TTAAAAAACATGAAGGGACCATGTAGACAGAAATTCAGAGAGATATCAAA TCAGAGCAGTGTCGGTAGAGTATATGGAAAAATAAAAGACGCCGCGATCG AGTTCTGGTTGGTGCGTGTGCCGTGTGGGTAAACGATTACGTTCCTATCC CTCGAGAAATGTCAGAAACCGGCTCTATAAAATTGCGGAGCATGAACCAA AAAAAAATATGAGTGGGTATCATTTCCTTGACCAAGTGGAAAGCGAACCA ATTGTTG
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Coding sequence (CDS) from alignment at chr7:137350..139156+

>NO07G00350.1 ID=NO07G00350.1|Name=NO07G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr7:137350..139156+ (Nannochloropsis oceanica)
ATGGACAAAACATTTGCCGCTACGCAACACCTGCAGCAGCCACAGGCCTC
GCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGGGTGATAGCCTGATGG
CGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGTCCGGCCACGACTCCG
GCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCCCTTGCGTGCGACGGA
TGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGGGAAAGGCGGCTGGGG
CGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGAGGGCACAAGACGGCG
GAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGAAGCTTTGGGTGTGGC
CCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGGCGAAGACCCAGGAAC
CCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAATTTCACAAGAAGAAA
GAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGCACAGGTAGTGGACAA
GGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGATTGGAGAAGTGGCGG
CGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAGAGGGTGAATAAAATG
GGACATCGTGTGGCAGAGCACGCTGAGGCGATGGAAAATAAAGTCCAGTC
AATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTGCCGTGGATCGAGCCA
AGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCAGAGCACATGGGGGAT
GCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCATGGCTGGCGAAGTGCA
GCACCGGTCGAAGGAAGAGTAA
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Synonyms
Publications