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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:137350..139156 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00350.1 vs.
Match: EWM27351.1 (hypothetical protein Naga_100394g3 [Nannochloropsis gaditana]) HSP 1 Score: 129.4 bits (324), Expect = 1.700e-26 Identity = 95/244 (38.93%), Postives = 135/244 (55.33%), Query Frame = 0
Query: 50 PAGEKGREGGTDPLRATDEALTGAAGWVKGKAAGAWQTVKAGTVSGGHKTAEGLGTVKDKMGEALGVAREKVASATHRVA-KTQEPKSPVRERAAQEFHKKKEEGKETTQAMKAQVVDKAEGATDVTKVKIGEVAARGSEAGAQAQERVNKMGHRVAEHAE-------AMENKVQSMAQ-----------ATKQQGQSAVDRAKET---AQEAAGTTAEHMGDAAGKVSGFMEGMAGEVQHRSK 272
P E+G+ T PL + +E TGA GWVK K AGAW+ VK+GT +G KT+EGLG++K K+G+A R K H VA KTQE SP++ERA Q F +KE+GK T ++K VV+K EG TD K + E +G E + + + + ++ E AE AM K+++ Q A K + Q ++A+ET AQE A AE G A G+ G+ EG+A EV+ + +
Sbjct: 20 PQTEQGKV--TRPLESAEENATGAVGWVKDKMAGAWKAVKSGTTTGTQKTSEGLGSMKSKVGDAFKQGRNKAVDTAHEVAEKTQEVASPIQERATQGFDTEKEKGKGTIGSVKDHVVEKIEGTTDAAKARAQEALDQGREYEKEVESKARETEQKMEEKAEAAKTGFAAMGEKIKAAGQAGKGRLGNAMNAWKPKAQETTEKAQETAERAQETAEDVAEKAGRATGQAKGWAEGVADEVKEKGQ 261
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00350.1 ID=NO07G00350.1|Name=NO07G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp CTGCAGAACAGAACTTCGTCCCGGACGCAGATAAAAATCAAGGCTGATTA AAGCACCACGCCAATATGGACAAAACATTTGCCGCTACGCAACACCTGCA GCAGCCACAGGCCTCGCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGG GTGATAGCCTGATGGCGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGT CCGGCCACGACTCCGGCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCC CTTGCGTGCGACGGATGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGG GAAAGGCGGCTGGGGCGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGA GGGCACAAGACGGCGGAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGA AGCTTTGGGTGTGGCCCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGG CGAAGACCCAGGAACCCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAA TTTCACAAGAAGAAAGAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGC ACAGGTAGTGGACAAGGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGA TTGGAGAAGTGGCGGCGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAG AGGGTGAATAAAATGGGACATCGTGTGGCAGAGCACGCTGAGGCGATGGA AAATAAAGTCCAGTCAATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTG CCGTGGATCGAGCCAAGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCA GAGCACATGGGGGATGCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCAT GGCTGGCGAAGTGCAGCACCGGTCGAAGGAAGAGTAAAGACGACAAGGCG GACCCGTACCGATAGGGTTCAGTGAACTTGAAGGAGCGAGTGGCATCAAG ATACGTGGACGGACGAAGAAAGGAGGAGGAGAACGAGTCAAGGCGTTGGC ACGTGACTTGGCTACCTTTACCTTGGACATGTCGCGAGCGTGTGTGGTAT GAGGGGAGGAGGATAGAGGGATATTATCTATTATTGTAAAAACAGTAAAT TGGATGAAGGAGATAATGAAGGATACGTATGCACGCATTAGAAAGGGGGA AGAGAGAGTGTCAAGGCGTCGGCGCGTGACTTGGCTACCTTGGACATGCC GTGAGCGTGTGGGGTAGGAGAGGAAATGGATAGGAGGATTTTATCTCTTG TTATGAGAGCAGTTAATTGGATGAAGGATATTATGACGGAAACATATGCC CGCATGAGGAGATAGACTAGATTGTGAAGGAATGAATGCCTGTCCTCTTG CTGCAGGGTAGGCAAAATCAGAGGGCAAGAAATGTTCGCTTAGACGTGGC TGGATTTTTACGGAGCCCATTCATGCAAAAAATTCTATGTTCAAGCCGAC AGGTTATTTACACGCCCTCTGTGGTAGCTCATCGGGCCGCTGTCCAACGG TAATCGGCGCGCAAGAAAAAGCAGCGGGTGTAAGTGATTTTTTTTTTTTT TTAAAAAACATGAAGGGACCATGTAGACAGAAATTCAGAGAGATATCAAA TCAGAGCAGTGTCGGTAGAGTATATGGAAAAATAAAAGACGCCGCGATCG AGTTCTGGTTGGTGCGTGTGCCGTGTGGGTAAACGATTACGTTCCTATCC CTCGAGAAATGTCAGAAACCGGCTCTATAAAATTGCGGAGCATGAACCAA AAAAAAATATGAGTGGGTATCATTTCCTTGACCAAGTGGAAAGCGAACCA ATTGTTG back to topprotein sequence of NO07G00350.1 >NO07G00350.1-protein ID=NO07G00350.1-protein|Name=NO07G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp MDKTFAATQHLQQPQASQKSQGRKEGGLGDSLMAEEEFVVPPEGRPATTP AGEKGREGGTDPLRATDEALTGAAGWVKGKAAGAWQTVKAGTVSGGHKTA EGLGTVKDKMGEALGVAREKVASATHRVAKTQEPKSPVRERAAQEFHKKK EEGKETTQAMKAQVVDKAEGATDVTKVKIGEVAARGSEAGAQAQERVNKM GHRVAEHAEAMENKVQSMAQATKQQGQSAVDRAKETAQEAAGTTAEHMGD AAGKVSGFMEGMAGEVQHRSKEE* back to topmRNA from alignment at chr7:137350..139156+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00350.1 ID=NO07G00350.1|Name=NO07G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp|location=Sequence derived from alignment at chr7:137350..139156+ (Nannochloropsis oceanica) CTGCAGAACAGAACTTCGTCCCGGACGCAGATAAAAATCAAGGCTGATTA
AAGCACCACGCCAATATGGACAAAACATTTGCCGCTACGCAACACCTGCA
GCAGCCACAGGCCTCGCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGG
GTGATAGCCTGATGGCGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGT
CCGGCCACGACTCCGGCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCC
CTTGCGTGCGACGGATGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGG
GAAAGGCGGCTGGGGCGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGA
GGGCACAAGACGGCGGAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGA
AGCTTTGGGTGTGGCCCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGG
CGAAGACCCAGGAACCCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAA
TTTCACAAGAAGAAAGAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGC
ACAGGTAGTGGACAAGGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGA
TTGGAGAAGTGGCGGCGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAG
AGGGTGAATAAAATGGGACATCGTGTGGCAGAGCACGCTGAGGCGATGGA
AAATAAAGTCCAGTCAATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTG
CCGTGGATCGAGCCAAGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCA
GAGCACATGGGGGATGCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCAT
GGCTGGCGAAGTGCAGCACCGGTCGAAGGAAGAGTAAAGACGACAAGGCG
GACCCGTACCGATAGGGTTCAGTGAACTTGAAGGAGCGAGTGGCATCAAG
ATACGTGGACGGACGAAGAAAGGAGGAGGAGAACGAGTCAAGGCGTTGGC
ACGTGACTTGGCTACCTTTACCTTGGACATGTCGCGAGCGTGTGTGGTAT
GAGGGGAGGAGGATAGAGGGATATTATCTATTATTGTAAAAACAGTAAAT
TGGATGAAGGAGATAATGAAGGATACGTATGCACGCATTAGAAAGGGGGA
AGAGAGAGTGTCAAGGCGTCGGCGCGTGACTTGGCTACCTTGGACATGCC
GTGAGCGTGTGGGGTAGGAGAGGAAATGGATAGGAGGATTTTATCTCTTG
TTATGAGAGCAGTTAATTGGATGAAGGATATTATGACGGAAACATATGCC
CGCATGAGGAGATAGACTAGATTGTGAAGGAATGAATGCCTGTCCTCTTG
CTGCAGGGTAGGCAAAATCAGAGGGCAAGAAATGTTCGCTTAGACGTGGC
TGGATTTTTACGGAGCCCATTCATGCAAAAAATTCTATGTTCAAGCCGAC
AGGTTATTTACACGCCCTCTGTGGTAGCTCATCGGGCCGCTGTCCAACGG
TAATCGGCGCGCAAGAAAAAGCAGCGGGTGTAAGTGATTTTTTTTTTTTT
TTAAAAAACATGAAGGGACCATGTAGACAGAAATTCAGAGAGATATCAAA
TCAGAGCAGTGTCGGTAGAGTATATGGAAAAATAAAAGACGCCGCGATCG
AGTTCTGGTTGGTGCGTGTGCCGTGTGGGTAAACGATTACGTTCCTATCC
CTCGAGAAATGTCAGAAACCGGCTCTATAAAATTGCGGAGCATGAACCAA
AAAAAAATATGAGTGGGTATCATTTCCTTGACCAAGTGGAAAGCGAACCA
ATTGTTG back to topCoding sequence (CDS) from alignment at chr7:137350..139156+ >NO07G00350.1 ID=NO07G00350.1|Name=NO07G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr7:137350..139156+ (Nannochloropsis oceanica) ATGGACAAAACATTTGCCGCTACGCAACACCTGCAGCAGCCACAGGCCTC GCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGGGTGATAGCCTGATGG CGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGTCCGGCCACGACTCCG GCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCCCTTGCGTGCGACGGA TGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGGGAAAGGCGGCTGGGG CGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGAGGGCACAAGACGGCG GAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGAAGCTTTGGGTGTGGC CCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGGCGAAGACCCAGGAAC CCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAATTTCACAAGAAGAAA GAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGCACAGGTAGTGGACAA GGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGATTGGAGAAGTGGCGG CGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAGAGGGTGAATAAAATG GGACATCGTGTGGCAGAGCACGCTGAGGCGATGGAAAATAAAGTCCAGTC AATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTGCCGTGGATCGAGCCA AGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCAGAGCACATGGGGGAT GCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCATGGCTGGCGAAGTGCA GCACCGGTCGAAGGAAGAGTAA back to top
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