NO07G00320.1, NO07G00320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00320.1
Unique NameNO07G00320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1123
Alignment locationchr7:132954..134076 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:132954..134076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00320.1 vs.
Match: KFO34185.1 (Protein IWS1 like protein [Fukomys damarensis])

HSP 1 Score: 63.5 bits (153), Expect = 7.900e-7
Identity = 90/190 (47.37%), Postives = 103/190 (54.21%), Query Frame = 0 
Query:   15 ERGGG-----EEEGRSSGGGEEEGRRR---GGAVEEGRRRGGGGRSSGGGEEEGRRGGGEEEGRRRGGG----EEEGRSSGGGGEGAVEDAVKVEEADKGRKEVGGGVDGEEEVRRRGGEG---EEKGRRRGGGGEGAVEDAVKVEEADKGRKEVGGGVDGEEEGRRSSGGGEEEKGRRR---GGGEKEQ 187
            +R GG     EEE       EEE RRR   GG  EE RRR    R  GGGEEE      EE  RRRGGG    EE  R  GGGGE         EE ++ R+  GGG + EE  RRRGG G   EE+ RRRGGGGE         EE ++ R+  GGG + EE  RR  GGGEEE+ RRR   GGGE+E+
Sbjct:   18 KRSGGRRRRREEEEEEEEQEEEERRRRRGGGGEEEEERRR----RRGGGGEEE------EERRRRRGGGGEEEEERRRRRGGGGE---------EEEERRRRRGGGGEEEEERRRRRGGGGEEEEERRRRRGGGGE---------EEEERRRRRGGGGEEEEERRRRRGGGGEEEEERRRRRGGGGEEEE 179
The following BLAST results are available for this feature:
BLAST of NO07G00320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KFO34185.17.900e-747.37Protein IWS1 like protein [Fukomys damarensis][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00320NO07G00320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00320.1NO07G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00320.1.cds1NO07G00320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00320.1 ID=NO07G00320.1|Name=NO07G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp
CTTGAATAAATCCACTTCCGCAATTAGATCCTCTTCTATCTCCTGCACTT
TCTGCTTCCGATTGCCTTCCCATACCAACATTGCACCGTATTTTCTCCGA
ACTTGTCTTTCGGATCTCCACCTTGTCTTAGGCACATTCTGATTAATATG
CATTGCCACATCTTTCCAATATCCGTCTGGAGCTCTTTTTCTTGGCCATA
TGATCACGGGCCGGGCAGTTGTATACTCAACCAAAAGTTTGACCTATATG
GGGAAAGAAGACGATAGAGAAAGAAAAGATAAGTCTGAGATAGAATTAAA
TAATGATTTAAATAAAAAATACCTCTTCTGGATTCCACCGATGGCTGCTG
TTTTGGCTGCATTGATCCTTCATGTTTAATCCCTGTACAAGTGGGTGATA
ATCACTTGAGTTCACGGTGCTCACAATACACACACACTGCAAAAATTGGC
TGCACGTTACGATAATGGGCGGCTGGGCTGCACGTTACGATAGTCGATAG
TCGCCGATCGTCATGTTCATATAGTCGTAGCCATCTTATTTATACACACG
ATGATTCCAACCGAAAACGATGTTGACGTACATCGTTTTGTTGAGAGAGG
AGGAGGGGAGGAGGAGGGGAGGAGCAGTGGAGGAGGGGAGGAGGAGGGGA
GGAGGAGGGGAGGAGCAGTGGAGGAGGGGAGGAGGAGGGGAGGAGGAGGG
AGGAGCAGTGGAGGAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGGGAGGA
GGAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGAGGGGAGAAGCAGTGGAG
GAGGGGGAGAAGGAGCAGTGGAGGATGCGGTGAAGGTAGAGGAGGCAGAT
AAAGGGAGGAAGGAGGTTGGAGGAGGTGTAGACGGGGAGGAGGAGGTGAG
GAGAAGGGGAGGAGAAGGGGAGGAGAAAGGGAGAAGAAGGGGAGGAGGGG
GAGAAGGAGCAGTGGAGGATGCGGTGAAGGTAGAGGAGGCAGATAAAGGG
AGAAAGGAGGTCGGAGGAGGTGTAGACGGGGAGGAGGAGGGGAGAAGGAG
CAGTGGAGGAGGGGAGGAGGAGAAGGGGAGGAGAAGGGGAGGAGGGGAGA
AGGAGCAGTGGGGGATGCGGTGA
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protein sequence of NO07G00320.1

>NO07G00320.1-protein ID=NO07G00320.1-protein|Name=NO07G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MIPTENDVDVHRFVERGGGEEEGRSSGGGEEEGRRRGGAVEEGRRRGGGG
RSSGGGEEEGRRGGGEEEGRRRGGGEEEGRSSGGGGEGAVEDAVKVEEAD
KGRKEVGGGVDGEEEVRRRGGEGEEKGRRRGGGGEGAVEDAVKVEEADKG
RKEVGGGVDGEEEGRRSSGGGEEEKGRRRGGGEKEQWGMR*
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mRNA from alignment at chr7:132954..134076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00320.1 ID=NO07G00320.1|Name=NO07G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp|location=Sequence derived from alignment at chr7:132954..134076+ (Nannochloropsis oceanica)
CTTGAATAAATCCACTTCCGCAATTAGATCCTCTTCTATCTCCTGCACTT
TCTGCTTCCGATTGCCTTCCCATACCAACATTGCACCGTATTTTCTCCGA
ACTTGTCTTTCGGATCTCCACCTTGTCTTAGGCACATTCTGATTAATATG
CATTGCCACATCTTTCCAATATCCGTCTGGAGCTCTTTTTCTTGGCCATA
TGATCACGGGCCGGGCAGTTGTATACTCAACCAAAAGTTTGACCTATATG
GGGAAAGAAGACGATAGAGAAAGAAAAGATAAGTCTGAGATAGAATTAAA
TAATGATTTAAATAAAAAATACCTCTTCTGGATTCCACCGATGGCTGCTG
TTTTGGCTGCATTGATCCTTCATGTTTAATCCCTGTACAAGTGGGTGATA
ATCACTTGAGTTCACGGTGCTCACAATACACACACACTGCAAAAATTGGC
TGCACGTTACGATAATGGGCGGCTGGGCTGCACGTTACGATAGTCGATAG
TCGCCGATCGTCATGTTCATATAGTCGTAGCCATCTTATTTATACACACG
ATGATTCCAACCGAAAACGATGTTGACGTACATCGTTTTGTTGAGAGAGG
AGGAGGGGAGGAGGAGGGGAGGAGCAGTGGAGGAGGGGAGGAGGAGGGGA
GGAGGAGGGGAGGAGCAGTGGAGGAGGGGAGGAGGAGGGGAGGAGGAGGG
AGGAGCAGTGGAGGAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGGGAGGA
GGAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGAGGGGAGAAGCAGTGGAG
GAGGGGGAGAAGGAGCAGTGGAGGATGCGGTGAAGGTAGAGGAGGCAGAT
AAAGGGAGGAAGGAGGTTGGAGGAGGTGTAGACGGGGAGGAGGAGGTGAG
GAGAAGGGGAGGAGAAGGGGAGGAGAAAGGGAGAAGAAGGGGAGGAGGGG
GAGAAGGAGCAGTGGAGGATGCGGTGAAGGTAGAGGAGGCAGATAAAGGG
AGAAAGGAGGTCGGAGGAGGTGTAGACGGGGAGGAGGAGGGGAGAAGGAG
CAGTGGAGGAGGGGAGGAGGAGAAGGGGAGGAGAAGGGGAGGAGGGGAGA
AGGAGCAGTGGGGGATGCGGTGA
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Coding sequence (CDS) from alignment at chr7:132954..134076+

>NO07G00320.1 ID=NO07G00320.1|Name=NO07G00320.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr7:132954..134076+ (Nannochloropsis oceanica)
ATGATTCCAACCGAAAACGATGTTGACGTACATCGTTTTGTTGAGAGAGG
AGGAGGGGAGGAGGAGGGGAGGAGCAGTGGAGGAGGGGAGGAGGAGGGGA
GGAGGAGGGGAGGAGCAGTGGAGGAGGGGAGGAGGAGGGGAGGAGGAGGG
AGGAGCAGTGGAGGAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGGGAGGA
GGAGGGGAGGAGGAGGGGAGGAGGGGAGGAGGAGGGGAGAAGCAGTGGAG
GAGGGGGAGAAGGAGCAGTGGAGGATGCGGTGAAGGTAGAGGAGGCAGAT
AAAGGGAGGAAGGAGGTTGGAGGAGGTGTAGACGGGGAGGAGGAGGTGAG
GAGAAGGGGAGGAGAAGGGGAGGAGAAAGGGAGAAGAAGGGGAGGAGGGG
GAGAAGGAGCAGTGGAGGATGCGGTGAAGGTAGAGGAGGCAGATAAAGGG
AGAAAGGAGGTCGGAGGAGGTGTAGACGGGGAGGAGGAGGGGAGAAGGAG
CAGTGGAGGAGGGGAGGAGGAGAAGGGGAGGAGAAGGGGAGGAGGGGAGA
AGGAGCAGTGGGGGATGCGGTGA
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Synonyms
Publications