NO07G00290.2, NO07G00290.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00290.2
Unique NameNO07G00290.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1715
Alignment locationchr7:113696..116185 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:113696..116185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G00290.2 vs.
Match: EWM27358.1 (Protein of unknown function DUF962 [Nannochloropsis gaditana])

HSP 1 Score: 219.2 bits (557), Expect = 1.500e-53
Identity = 111/179 (62.01%), Postives = 134/179 (74.86%), Query Frame = 0 
Query:    1 MTPKKDAGGLLDIEKQFTFYAAYHDNALNKWIHIFCIWPLLFTALILLWKIPVGLLQNAILPPAVAAKLSVHGVQLTVNWALVGAVIYILFYLSLEAKNTQKMTGLGVFAALLVGALYFVAGYVSSLPPIYIPHGK-GIEINVTHAVMAIHVMCWIAQFVGHFVFEGRAPALMTNLYQA 179
            M PKK   GLLDIEKQFTFYAAYHDN +NKWIHI CIWPL+FT L+LLW    G++    LP ++   LSV GV LT+NWAL+ A +YI FYLSLE +N +KMTGLG+FAA LV  LYFVAG + +LPP++  +GK  +EI    A +A H MCW+AQF+GH +FEGRAPAL TNL QA
Sbjct:    1 MAPKK--AGLLDIEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWT-NAGIVSQISLPSSLT-NLSVQGVPLTLNWALLAACVYIAFYLSLEFENAKKMTGLGIFAAALVAILYFVAGRLVALPPLHAAYGKQSVEITYRQAALATHGMCWVAQFIGHGLFEGRAPALFTNLVQA 175
The following BLAST results are available for this feature:
BLAST of NO07G00290.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27358.11.500e-5362.01Protein of unknown function DUF962 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00290NO07G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00290.2NO07G00290.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00290.2.cds1NO07G00290.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00290.2.cds2NO07G00290.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00290.2.cds3NO07G00290.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00290.2.cds4NO07G00290.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00290.2 ID=NO07G00290.2|Name=NO07G00290.2|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp
ACAGGCTATCAAAACAACCATCTACACATCCCATTAATCGAAAATGACAC
CCAAAAAGGATGCAGGCGGTCTCCTCGACATTGAGAAGCAGTTCACATTC
TACGCTGCCTATCACGACAATGCACTCAACAAATGGATCCACATCTTCTG
TATCTGGCCTTTGCTTTTTACCGCCCTCATCCTCTTATGGAAGATCCCCG
TCGGGCTCCTCCAGAACGCCATCCTCCCTCCTGCCGTCGCCGCTAAGTTA
TCGGTGCATGGCGTGCAGTTGACGGTCAACTGGGCCTTGGTGGGAGCCGT
GATTTACATTCTGTTCTACTTGTCGTTGGAGGCAAAGAATACCCAAAAGA
TGACGGGCCTGGGAGTCTTCGCGGCCCTGCTTGTCGGTGCACTGTACTTC
GTGGCGGGCTACGTCTCCTCTCTTCCTCCAATTTACATTCCTCATGGCAA
GGGTATCGAAATAAATGTCACTCACGCCGTGATGGCTATTCATGTCATGT
GCTGGATCGCCCAATTTGTTGGCCACTTTGTTTTCGAAGGCCGGGCCCCG
GCGTTGATGACCAACCTCTACCAGGCAAGATTTCCCTTCCTGATTTCCCT
CCCTTGCGCCCTCCATCCTTCTCCCCCTTCCTGTTCCTGTCCACCAGCCC
TGTTTCCTGTCATTCGTTGCTCTCTCACTCCTTCTTGCTATTCCATTTTT
ATAATTACCCTTGGCTTCCCCCCCCACTTTGTATTTCTTATTCCTCCCTC
ATTTTCTGCCTCCCTCTTCCCCTCGCCCAGGCCTTCTTGATGGCCCCTAT
TTTCGTTCTCATGGAGATGGTGTTTCTCGCGGGCGGGAAGAAGAAGCTGT
ATAAGTCCATCGCCGCAAAGGTCAAGGAGGAGCTCGCCGCCTTTGAAATT
CAAAAGGCAATTTCAAGCGGTGCCGGTCGAGTCACGCGCTCCAAGAGCAA
AAGGGCGTAAGATACGGGAGGACGGGATGGAGGGATGACAGGCTTTTGGA
GGTAGGCACGAATAGTAGGATAATGCCTGTAGAAAGTGAATTGAGGGAGG
AAGGGCGGGAGGGCGAGAGGGCTAACGAATGCTATATATACAGAGATACA
CCTGAATATCTCAATGGATGTCTGAGTGTGCGTCCCGGAGGCGCATGACA
TGAGTGCGAGTGACATTGACCGTTCCATCGAGTGACAGAAAAGGAGGTGG
AAACGACGCTGAGAAGAAATGAAAAAAAGTGTGTGCCAAGCGAGGCAGAG
CAAAAATAGGTATGGAAGACCGTGTAGAAGAGAGGGAGAATGAGTTGTGA
GTCAAGGCGCGCAGACACGGAGCATAGAAATATTGAAGAAAGTTTAACGC
CGTGAAGGTTGCCAGGCAAAAGAAAAGAAAGGGGAGGATAAAAACAAAGC
ATTTTTTTAATATTTATTTCGGAGGTAACGTAGAAGGGAGGGAGGAAGGG
AGGAAAAGCAGGCATTATGCAAGTGCTATTGTAAACAATGGATCATTTGA
GGAGGATGTGAGGATATTTATTATTTTTTGTTCCTAAGCTGAATAAGGAC
AACATGATATCGATCCAGCAAGCAAGGGCGAAAAATAGAAGGGCGAGAAG
GTATGCTTTCAATCATCGAGACACTGCATCCCATCAGTACCACTCCAAAA
CAACGAGCACTTGGACCGACTTACCATTGCATGGCCCTTCCTTTTTCCCC
CCCTCCTATCAAGGA
back to top

protein sequence of NO07G00290.2

>NO07G00290.2-protein ID=NO07G00290.2-protein|Name=NO07G00290.2|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MTPKKDAGGLLDIEKQFTFYAAYHDNALNKWIHIFCIWPLLFTALILLWK
IPVGLLQNAILPPAVAAKLSVHGVQLTVNWALVGAVIYILFYLSLEAKNT
QKMTGLGVFAALLVGALYFVAGYVSSLPPIYIPHGKGIEINVTHAVMAIH
VMCWIAQFVGHFVFEGRAPALMTNLYQARFPFLISLPCALHPSPPSCSCP
PALFPVIRCSLTPSCYSIFIITLGFPPHFVFLIPPSFSASLFPSPRPS*
back to top

mRNA from alignment at chr7:113696..116185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00290.2 ID=NO07G00290.2|Name=NO07G00290.2|organism=Nannochloropsis oceanica|type=mRNA|length=2490bp|location=Sequence derived from alignment at chr7:113696..116185+ (Nannochloropsis oceanica)
ACAGGCTATCAAAACAACCATCTACACATCCCATTAATCGAAAATGACAC
CCAAAAAGGATGCAGGCGGTCTCCTCGACATTGAGAAGCAGGTGCGTTTT
TGCTAGCAGCAGGGATGAGGGGAGCTGTGACACAACATGAACGGGGTTCT
GTGGATCGACAAGCAGCAAATGAGTGATGGTTGGACGGCGCAAATGGATT
CTTATCTCTGTATGGCCAACCCCATCGTTTAAGTCTACCCCACCTTCAGC
TTTCTTCTCTGCCCTAGCCACCGAGCTGCTAAATTTTCATCCCAAGCCAC
GGGCCATCTGGACAACCGTGTCGCTCAATGGGCTATCATCCTCCTTCGCC
CCTAACACCTACATGCATTCCCATACCACCAATAGTTCACATTCTACGCT
GCCTATCACGACAATGCACTCAACAAATGGATCCACATCTTCTGTATCTG
GCCTTTGCTTTTTACCGCCCTCATCCTCTTATGGAAGATCCCCGTCGGGC
TCCTCCAGAACGCCATCCTCCCTCCTGCCGTCGCCGCTAAGTTATCGGTG
CATGGCGTGCAGTTGACGGTCAACTGGGCCTTGGTGGGAGCCGTGATTTA
CATTCTGTTCTACTTGTCGTTGGAGGCAAAGAATACCCAAAAGATGACGG
GCCTGGGAGTCTTCGCGGTAGGCTGTGGTTGGAAGTGAAGGGAGGGAAGG
AAGGAGAGAGGGATGAAGATCAGCCGATAGACAAAGCATGGGCAGAGAGG
AAGCCACAAACAATTAATTTTCTAGTATCGTCAGATTTTACCACCAGTCT
CTCTCTAACTCACGTAGGCCCTGCTTGTCGGTGCACTGTACTTCGTGGCG
GGCTACGTCTCCTCTCTTCCTCCAATTTACATTCCTCATGGCAAGGGTAT
CGAAATAAATGTCACTCACGCCGTGATGGCTATTCATGTAAGTGGCATTA
ACCCTTCTTCCCTCCCTTCCTCTAAAAGGAATCGGACTGCAACCCCTTAT
ATCTTCATCTCATTTCTTCCCCCCCCTTCCCTTATTGATTTTAAACAGGT
CATGTGCTGGATCGCCCAATTTGTTGGCCACTTTGTTTTCGAAGGCCGGG
CCCCGGCGTTGATGACCAACCTCTACCAGGCAAGATTTCCCTTCCTGATT
TCCCTCCCTTGCGCCCTCCATCCTTCTCCCCCTTCCTGTTCCTGTCCACC
AGCCCTGTTTCCTGTCATTCGTTGCTCTCTCACTCCTTCTTGCTATTCCA
TTTTTATAATTACCCTTGGCTTCCCCCCCCACTTTGTATTTCTTATTCCT
CCCTCATTTTCTGCCTCCCTCTTCCCCTCGCCCAGGCCTTCTTGATGGCC
CCTATTTTCGTTCTCATGGAGATGGTGTTTCTCGCGGGCGGGAAGAAGAA
GCTGTATAAGGTAAATAGCAAGGGAGAAAAAGCAGATAAATTGACGGGAG
AGTATGAGGAAAAGGAGGGCGAGAGTGTCCTGAAGATTTTCCGCAACGGA
AAGGACAAAGGCGAGGCTTTAAACGGTCAAAATTAAAATCTGAGCAGCTC
ATGTGACCCTTCAACTTAAACTATCTCCTCTCCTTCCCTCCTCCCCTCCC
TCCTTCCCTACTCCCTCTCGTCATCCCTAGTCCATCGCCGCAAAGGTCAA
GGAGGAGCTCGCCGCCTTTGAAATTCAAAAGGCAATTTCAAGCGGTGCCG
GTCGAGTCACGCGCTCCAAGAGCAAAAGGGCGTAAGATACGGGAGGACGG
GATGGAGGGATGACAGGCTTTTGGAGGTAGGCACGAATAGTAGGATAATG
CCTGTAGAAAGTGAATTGAGGGAGGAAGGGCGGGAGGGCGAGAGGGCTAA
CGAATGCTATATATACAGAGATACACCTGAATATCTCAATGGATGTCTGA
GTGTGCGTCCCGGAGGCGCATGACATGAGTGCGAGTGACATTGACCGTTC
CATCGAGTGACAGAAAAGGAGGTGGAAACGACGCTGAGAAGAAATGAAAA
AAAGTGTGTGCCAAGCGAGGCAGAGCAAAAATAGGTATGGAAGACCGTGT
AGAAGAGAGGGAGAATGAGTTGTGAGTCAAGGCGCGCAGACACGGAGCAT
AGAAATATTGAAGAAAGTTTAACGCCGTGAAGGTTGCCAGGCAAAAGAAA
AGAAAGGGGAGGATAAAAACAAAGCATTTTTTTAATATTTATTTCGGAGG
TAACGTAGAAGGGAGGGAGGAAGGGAGGAAAAGCAGGCATTATGCAAGTG
CTATTGTAAACAATGGATCATTTGAGGAGGATGTGAGGATATTTATTATT
TTTTGTTCCTAAGCTGAATAAGGACAACATGATATCGATCCAGCAAGCAA
GGGCGAAAAATAGAAGGGCGAGAAGGTATGCTTTCAATCATCGAGACACT
GCATCCCATCAGTACCACTCCAAAACAACGAGCACTTGGACCGACTTACC
ATTGCATGGCCCTTCCTTTTTCCCCCCCTCCTATCAAGGA
back to top

Coding sequence (CDS) from alignment at chr7:113696..116185+

>NO07G00290.2 ID=NO07G00290.2|Name=NO07G00290.2|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr7:113696..116185+ (Nannochloropsis oceanica)
ATGACACCCAAAAAGGATGCAGGCGGTCTCCTCGACATTGAGAAGCAGTT
CACATTCTACGCTGCCTATCACGACAATGCACTCAACAAATGGATCCACA
TCTTCTGTATCTGGCCTTTGCTTTTTACCGCCCTCATCCTCTTATGGAAG
ATCCCCGTCGGGCTCCTCCAGAACGCCATCCTCCCTCCTGCCGTCGCCGC
TAAGTTATCGGTGCATGGCGTGCAGTTGACGGTCAACTGGGCCTTGGTGG
GAGCCGTGATTTACATTCTGTTCTACTTGTCGTTGGAGGCAAAGAATACC
CAAAAGATGACGGGCCTGGGAGTCTTCGCGGCCCTGCTTGTCGGTGCACT
GTACTTCGTGGCGGGCTACGTCTCCTCTCTTCCTCCAATTTACATTCCTC
ATGGCAAGGGTATCGAAATAAATGTCACTCACGCCGTGATGGCTATTCAT
GTCATGTGCTGGATCGCCCAATTTGTTGGCCACTTTGTTTTCGAAGGCCG
GGCCCCGGCGTTGATGACCAACCTCTACCAGGCAAGATTTCCCTTCCTGA
TTTCCCTCCCTTGCGCCCTCCATCCTTCTCCCCCTTCCTGTTCCTGTCCA
CCAGCCCTGTTTCCTGTCATTCGTTGCTCTCTCACTCCTTCTTGCTATTC
CATTTTTATAATTACCCTTGGCTTCCCCCCCCACTTTGTATTTCTTATTC
CTCCCTCATTTTCTGCCTCCCTCTTCCCCTCGCCCAGGCCTTCTTGA
back to top
Synonyms
Publications