NO07G00270.1, NO07G00270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00270.1
Unique NameNO07G00270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1082
Alignment locationchr7:109621..111224 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:109621..111224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00270.1 vs.
Match: EWM27360.1 (Plastid lipid-associated protein/fibrillin conserved domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 223.8 bits (569), Expect = 7.200e-55
Identity = 127/185 (68.65%), Postives = 144/185 (77.84%), Query Frame = 0 
Query:    1 MSRLFYLPL-LLLLLPVLTPAFLFPATRLALPARQQRSLLHSTVDAADYPSDTADPDNSVDASTSRNGTDPPPVADEAKQQLRENFKCQIYKAASRLNRGQLQNLDQKNEMINLVAQLEALGAGRSVDAEDVEGVWELVYTDVEPFRVSPFFQTVGKVMGGTTLSAEDFFRLHRLATRGSEIGKV 185
            MSRL   PL LLLLLP +  AFL P  R ++P+R   S+L S+V+ ADYPSDTADP+ S +A    N T  P   DE K QLRE FKCQIYKAA+RLNRGQL NLDQ+NEM NL+AQLEA+G+GR  + E VEGVWELVY+DV PFR SPFF TVGKVM GTTLSAE+FFRLHRLATRGSEIGKV
Sbjct:    1 MSRLCAKPLFLLLLLPCIASAFLLPFPRASIPSRSP-SVLLSSVEGADYPSDTADPEPSPEAREG-NATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKV 183
The following BLAST results are available for this feature:
BLAST of NO07G00270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27360.17.200e-5568.65Plastid lipid-associated protein/fibrillin conserv... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00270NO07G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00270.1NO07G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00270.1.cds1NO07G00270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00270.1.cds2NO07G00270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00270.1.cds3NO07G00270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00270.1.cds4NO07G00270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00270.1 ID=NO07G00270.1|Name=NO07G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp
AACAGGACACATATTTTCATGTCGCGGCTCTTCTATCTTCCGCTTCTTCT
CCTCCTCCTCCCCGTCCTCACCCCCGCCTTCCTCTTCCCTGCCACCCGAC
TCGCCCTCCCTGCAAGGCAGCAGCGCTCCCTCCTCCATTCCACTGTGGAT
GCAGCCGACTACCCCTCCGACACTGCCGATCCAGACAACTCCGTTGACGC
TTCTACTTCTCGAAACGGAACTGACCCTCCTCCCGTTGCCGACGAGGCCA
AGCAGCAATTACGCGAGAATTTTAAGTGTCAGATTTACAAGGCGGCTTCG
AGGCTGAACCGAGGGCAGCTGCAAAACCTCGATCAGAAGAACGAGATGAT
CAACCTGGTGGCCCAACTGGAAGCTCTCGGCGCCGGGCGGTCCGTGGATG
CCGAGGACGTAGAGGGAGTTTGGGAACTCGTATACACTGATGTGGAGCCA
TTCAGGGTATCCCCATTCTTCCAGACGGTGGGGAAAGTGATGGGCGGCAC
CACCTTAAGCGCCGAGGACTTCTTCCGCTTGCATCGGCTGGCCACAAGGG
GAAGTGAAATTGGCAAAGTGCGTCAAATCATCACATCCCAAGAACTTGTC
TCGGAGGTCGAGATCATCAGCGGTATCCCTTCCATTCCGTTCGAGATCTC
AGGGACGGTGGTCACGCGCGCCTCCGCCGCCCGGACCCAGGAAGGTGGGC
TCAGACTGACCTTAAAGAGCAGCGGCGTGCAGTCCTCTTCAGTCTTCGCC
CTTCTCGGCGGTGGCGGAAATCTGCCGGAGCTCCCCTTGGCTGATATAGC
AGAGCGCGTGGGCTTGTTCCCGCCCAGCGTTCTAATGACCACTTACTACG
TCGATGCCAATATGCGCATTAGCCGTGATGAGGACGATCACTTCTTTGTG
TGGGCCCGAGGGCACATGTAGATTGAACTAAGAATGAAGTCGAAGACGAG
GACGTGGGAAGATGTATCATCCATTCCATTTCGTCTTGTTGAAAAGAAGG
AAGCGGTGTCATGATGTGCGGATTGAACGTGCATTTGGATTCCGGTAAAG
GAGAAAGAAAAAAAATCATAGTCTCGTTTTTG
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protein sequence of NO07G00270.1

>NO07G00270.1-protein ID=NO07G00270.1-protein|Name=NO07G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MSRLFYLPLLLLLLPVLTPAFLFPATRLALPARQQRSLLHSTVDAADYPS
DTADPDNSVDASTSRNGTDPPPVADEAKQQLRENFKCQIYKAASRLNRGQ
LQNLDQKNEMINLVAQLEALGAGRSVDAEDVEGVWELVYTDVEPFRVSPF
FQTVGKVMGGTTLSAEDFFRLHRLATRGSEIGKVRQIITSQELVSEVEII
SGIPSIPFEISGTVVTRASAARTQEGGLRLTLKSSGVQSSSVFALLGGGG
NLPELPLADIAERVGLFPPSVLMTTYYVDANMRISRDEDDHFFVWARGHM
*
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mRNA from alignment at chr7:109621..111224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00270.1 ID=NO07G00270.1|Name=NO07G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp|location=Sequence derived from alignment at chr7:109621..111224+ (Nannochloropsis oceanica)
AACAGGACACATATTTTCATGTCGCGGCTCTTCTATCTTCCGCTTCTTCT
CCTCCTCCTCCCCGTCCTCACCCCCGCCTTCCTCTTCCCTGCCACCCGAC
TCGCCCTCCCTGCAAGGCAGCAGCGCTCCCTCCTCCATTCCACTGTGGAT
GCAGCCGACTACCCCTCCGACACTGCCGATCCAGACAACTCCGTTGACGC
TTCTACTTCTCGAAACGGAACTGACCCTCCTCCCGTTGCCGACGAGGCCA
AGCAGCAATTACGCGAGAATTTTAAGTGTCAGATTTACAAGGCGGCTTCG
AGGCTGAACCGAGGGCAGCTGCAAAACCTCGATCAGAAGGTAATGAACAG
GGGATAGGTTATGAATTAGACTGATTTGCTGGAGAAGAATCCAGCAAAGC
AGTATCCTCACTCACAACACTTCCCCCCTGTCTCTCCGTCAAATCCTTCA
GAACGAGATGATCAACCTGGTGGCCCAACTGGAAGCTCTCGGCGCCGGGC
GGTCCGTGGATGCCGAGGACGTAGAGGGAGTTTGGGAACTCGTATACACT
GATGTGGAGCCATTCAGGGTATCCCCATTCTTCCAGACGGTGGGGAAAGT
GATGGGCGGCACCACCTTAAGCGCCGAGGACTTCTTCCGCTTGCATCGGC
TGGCCACAAGGGGAAGTGAAATTGGCAAAGTATGGAATACAAAAGAAGGG
GGAAAAGTAGAATCTTAGGGGAAGAGCCGCGAATATATGCGGTCTCATGA
GCGCCATCTTCAGGCGTATATATATGTATACACTTGAAAACCGATGGTGC
CTGCATTCCCTTCTTATCGACGACTTATAATAGAAGTCTGTCGCCATTCT
CACCACTCCTCCTTCCTGGCTATCCCTCCCTTTGTCGCCCTCGCTAGGTG
CGTCAAATCATCACATCCCAAGAACTTGTCTCGGAGGTCGAGATCATCAG
CGGTATCCCTTCCATTCCGTTCGAGATCTCAGGGACGGTGGTCACGCGCG
CCTCCGCCGCCCGGACCCAGGAAGGTGGGCTCAGACTGACCTTAAAGAGC
AGCGGCGTGCAGGTAGGTGCCCTTGGGCGCTTCTGTCTCTCTTTTCCACA
ATCCCTCCCTCTGCCCCCCTCTACTCCTATCTTTTATTCCATCAGCCGAT
CTTTTATTCCATCAGCCGATGCACGAAATGACTGCAATCAGAACAACCCG
ACTCGCACACGAAACTCACCTTTTCCTCTTCCCTTCCTCTCCTTCCCCAC
GTAGTCCTCTTCAGTCTTCGCCCTTCTCGGCGGTGGCGGAAATCTGCCGG
AGCTCCCCTTGGCTGATATAGCAGAGCGCGTGGGCTTGTTCCCGCCCAGC
GTTCTAATGACCACTTACTACGTCGATGCCAATATGCGCATTAGCCGTGA
TGAGGACGATCACTTCTTTGTGTGGGCCCGAGGGCACATGTAGATTGAAC
TAAGAATGAAGTCGAAGACGAGGACGTGGGAAGATGTATCATCCATTCCA
TTTCGTCTTGTTGAAAAGAAGGAAGCGGTGTCATGATGTGCGGATTGAAC
GTGCATTTGGATTCCGGTAAAGGAGAAAGAAAAAAAATCATAGTCTCGTT
TTTG
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Coding sequence (CDS) from alignment at chr7:109621..111224+

>NO07G00270.1 ID=NO07G00270.1|Name=NO07G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr7:109621..111224+ (Nannochloropsis oceanica)
ATGTCGCGGCTCTTCTATCTTCCGCTTCTTCTCCTCCTCCTCCCCGTCCT
CACCCCCGCCTTCCTCTTCCCTGCCACCCGACTCGCCCTCCCTGCAAGGC
AGCAGCGCTCCCTCCTCCATTCCACTGTGGATGCAGCCGACTACCCCTCC
GACACTGCCGATCCAGACAACTCCGTTGACGCTTCTACTTCTCGAAACGG
AACTGACCCTCCTCCCGTTGCCGACGAGGCCAAGCAGCAATTACGCGAGA
ATTTTAAGTGTCAGATTTACAAGGCGGCTTCGAGGCTGAACCGAGGGCAG
CTGCAAAACCTCGATCAGAAGAACGAGATGATCAACCTGGTGGCCCAACT
GGAAGCTCTCGGCGCCGGGCGGTCCGTGGATGCCGAGGACGTAGAGGGAG
TTTGGGAACTCGTATACACTGATGTGGAGCCATTCAGGGTATCCCCATTC
TTCCAGACGGTGGGGAAAGTGATGGGCGGCACCACCTTAAGCGCCGAGGA
CTTCTTCCGCTTGCATCGGCTGGCCACAAGGGGAAGTGAAATTGGCAAAG
TGCGTCAAATCATCACATCCCAAGAACTTGTCTCGGAGGTCGAGATCATC
AGCGGTATCCCTTCCATTCCGTTCGAGATCTCAGGGACGGTGGTCACGCG
CGCCTCCGCCGCCCGGACCCAGGAAGGTGGGCTCAGACTGACCTTAAAGA
GCAGCGGCGTGCAGTCCTCTTCAGTCTTCGCCCTTCTCGGCGGTGGCGGA
AATCTGCCGGAGCTCCCCTTGGCTGATATAGCAGAGCGCGTGGGCTTGTT
CCCGCCCAGCGTTCTAATGACCACTTACTACGTCGATGCCAATATGCGCA
TTAGCCGTGATGAGGACGATCACTTCTTTGTGTGGGCCCGAGGGCACATG
TAG
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Synonyms
Publications