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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:105286..109286 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00260.1 vs.
Match: POM68356.1 (Succinyl CoA transferase [Phytophthora palmivora var. palmivora]) HSP 1 Score: 689.9 bits (1779), Expect = 6.100e-195 Identity = 346/478 (72.38%), Postives = 404/478 (84.52%), Query Frame = 0
Query: 27 LLTTKRGLANKVFDSAAEAIHDIKDGSKLCVGGFGLCGIPENLIAALVQKGSKDLTCVSNNAGVDNFGLGLLLRSKQVKRMISSYVGENKEFERQYLSGELEVELTPQGSLAERLRAGGAGVPAFYTPTAYGTLVQEGGFPIKLNADGSTLIGSEPREVRKFQGRNYIMEEAITGDFSLVKAWKGDSKGNLVFRGTARNFNPDAARAGKICIAEVEELLRPGELHPDEIHLPGIYVHRILRGPSYEKRIERVTVTKKGSKESTGGKLNPARERIVKRAAQEFQDGMYVNLGIGIPVLASNYLPEGVSIELQSENGLLGMGPYPEEGTQDADVINAGKETVTFLKGSSTFSSSESFGMIRGAKVHLTMLGALQVAQNGDLANWIIPGKMVKGMGGAMDLVGSGNRVVVTMEHTAKGDSKKILKACTLPLTGPKVVDRIITELCVFDVDKIKGELILVEIFPGVTVEEVRAKTGADFRQA 505
+L+ + KV+ A A+ DI GSKL VGGFGLCGIPEN I ALVQ+G+KDLTCVSNNAGVD+FGLGLLL+++QVKRMISSYVGEN FE+ YL+GELEVELTPQG+LAER+RAGG+G+PAFYTPTAYGT++QEGGF IKL DGS I S PREVR+F GRNY+MEE ITGDF+LVKAWKGD+ GNLVFRGTARNFN DAA+AG+I IAEVEEL++PGE+HPD++HLP IYV RI + + EKRIER+T+ + + + K++P RERI++RAA+E ++GMYVNLGIG+P LASNY+P+GV + LQSENGLLGMGPYP EG QD D+INAGKETVTFL GSSTFSSSESFGMIRG VHLT+LGALQVA+NGDLANWIIPGKMVKGMGGAMDLVGSGNRVVVTMEH AKG +KKILK+C+LPLTG VV+ IITEL VFDV KG L+LVEI P TVEE+R +T A F A
Sbjct: 20 VLSARFSSHQKVYADADAAVKDIPSGSKLVVGGFGLCGIPENSIQALVQQGAKDLTCVSNNAGVDDFGLGLLLQTRQVKRMISSYVGENALFEKLYLTGELEVELTPQGTLAERIRAGGSGIPAFYTPTAYGTIIQEGGFAIKLKPDGSIDIPSAPREVRQFNGRNYVMEEGITGDFALVKAWKGDTDGNLVFRGTARNFNVDAAKAGQITIAEVEELVQPGEIHPDDVHLPSIYVQRIFKAKTSEKRIERLTL---ANAKKSQHKISPDRERIIRRAAKELKNGMYVNLGIGLPTLASNYVPDGVKVVLQSENGLLGMGPYPNEGEQDPDLINAGKETVTFLPGSSTFSSSESFGMIRGGHVHLTILGALQVAENGDLANWIIPGKMVKGMGGAMDLVGSGNRVVVTMEHNAKGGAKKILKSCSLPLTGKSVVNTIITELGVFDVVPGKG-LVLVEIAPTTTVEEIRERTEAPFTVA 493
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00260.1 ID=NO07G00260.1|Name=NO07G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp
CGCCACCTGGCCATTCCGTCTTCTTCTGCTTTATTTTCGGCTTACACGCC
CTTAGATGGTCCACGTGAATGTTCTTCTCTGCCTCCGTTTTCTTGTCCGT
ACTTTTGCTGGAGAACCTGGATAATGTCAGGGTATTGTTCCAAAAGCGTT
AAGTGAGGTCGCCTGCGCATGGGCCAATAACGTCTCCTTCATCCTTCCTC
CTAGCTCAGTCCCTCGTCGTACCGCACCACGCACACTCATCACATTCTTG
CCCTCCAAATCCTCCAAAAGATACGTGAAGCATGCAGTCCTCCCTTGCCC
TTCTTCGTCGGGCCCGGGGTCCGCTGCTGGTTTCCACCTCCCCTTCCTCC
TCCTCCTTCCTCCTGACAACCAAACGGGGTCTGGCCAACAAGGTCTTCGA
CTCGGCGGCCGAGGCCATCCACGACATCAAGGACGGCAGCAAGCTCTGCG
TAGGCGGTTTTGGTCTATGCGGCATCCCGGAGAACCTGATCGCTGCCCTA
GTGCAGAAGGGATCAAAGGATCTGACCTGTGTCTCCAATAATGCTGGCGT
GGACAACTTCGGCCTCGGGCTCCTCCTCCGATCCAAGCAGGTGAAGCGGA
TGATTTCGTCCTACGTAGGCGAGAACAAGGAGTTCGAGAGACAGTACTTG
TCCGGGGAGCTGGAGGTGGAGCTCACCCCTCAAGGCTCCTTGGCTGAGCG
TCTTCGCGCCGGAGGGGCTGGTGTTCCCGCATTCTACACCCCCACAGCCT
ACGGCACGTTGGTCCAGGAAGGAGGCTTTCCGATCAAGCTTAATGCAGAC
GGCAGCACCTTGATAGGGAGCGAGCCACGGGAGGTGCGGAAGTTTCAGGG
CCGGAATTACATCATGGAGGAGGCCATCACGGGCGATTTTTCGCTCGTCA
AGGCATGGAAGGGCGACAGCAAGGGAAACCTCGTCTTTCGTGGCACTGCC
CGTAACTTCAACCCCGACGCCGCCCGTGCCGGCAAGATCTGCATCGCCGA
GGTAGAGGAGCTGCTCCGGCCCGGTGAGCTTCACCCTGACGAGATCCACC
TGCCCGGGATTTACGTCCATCGCATTCTCCGAGGCCCAAGCTACGAGAAA
CGGATCGAGCGCGTAACGGTCACCAAGAAGGGGAGCAAGGAGAGCACGGG
CGGCAAGCTCAACCCTGCCCGTGAGCGCATCGTCAAACGAGCAGCCCAAG
AGTTCCAGGACGGGATGTACGTCAACTTAGGCATCGGCATCCCCGTACTC
GCCAGTAATTACTTGCCCGAAGGTGTCTCCATCGAGCTGCAGAGTGAAAA
CGGTCTCCTCGGCATGGGTCCCTACCCGGAGGAAGGGACGCAGGACGCCG
ATGTGATCAACGCCGGCAAGGAGACCGTTACCTTCCTCAAAGGCTCCTCC
ACCTTCTCCTCCTCCGAGTCCTTCGGCATGATTCGTGGCGCTAAGGTGCA
TTTGACTATGCTAGGCGCCTTGCAGGTGGCTCAGAATGGAGACCTCGCCA
ACTGGATCATACCCGGCAAGATGGTCAAGGGCATGGGCGGGGCCATGGAC
CTTGTGGGGAGCGGAAACCGGGTGGTGGTGACGATGGAGCACACAGCCAA
GGGCGACAGCAAGAAGATCTTGAAAGCGTGCACCTTGCCCCTGACGGGGC
CCAAGGTGGTGGACCGCATTATCACCGAGCTATGTGTCTTCGACGTCGAT
AAGATCAAAGGCGAGCTGATCCTCGTCGAGATTTTCCCTGGTGTGACAGT
AGAGGAAGTTCGGGCCAAAACGGGGGCGGATTTCCGACAGGCTGAGGGTG
GCGTGAAGGTAGTCAATGTTTAGGCGAGGAGAAGGAAGGAAGGGTGTGGG
GAAGGGAGGTGGTGTATTAAGGGAGAGAGAGAGAGGAGGGACAAGAGTTC
TATCGAATGAAAAGAAACAACAAGACTATGCCATATGCTAA back to topprotein sequence of NO07G00260.1 >NO07G00260.1-protein ID=NO07G00260.1-protein|Name=NO07G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MQSSLALLRRARGPLLVSTSPSSSSFLLTTKRGLANKVFDSAAEAIHDIK
DGSKLCVGGFGLCGIPENLIAALVQKGSKDLTCVSNNAGVDNFGLGLLLR
SKQVKRMISSYVGENKEFERQYLSGELEVELTPQGSLAERLRAGGAGVPA
FYTPTAYGTLVQEGGFPIKLNADGSTLIGSEPREVRKFQGRNYIMEEAIT
GDFSLVKAWKGDSKGNLVFRGTARNFNPDAARAGKICIAEVEELLRPGEL
HPDEIHLPGIYVHRILRGPSYEKRIERVTVTKKGSKESTGGKLNPARERI
VKRAAQEFQDGMYVNLGIGIPVLASNYLPEGVSIELQSENGLLGMGPYPE
EGTQDADVINAGKETVTFLKGSSTFSSSESFGMIRGAKVHLTMLGALQVA
QNGDLANWIIPGKMVKGMGGAMDLVGSGNRVVVTMEHTAKGDSKKILKAC
TLPLTGPKVVDRIITELCVFDVDKIKGELILVEIFPGVTVEEVRAKTGAD
FRQAEGGVKVVNV* back to topmRNA from alignment at chr7:105286..109286+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00260.1 ID=NO07G00260.1|Name=NO07G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=4001bp|location=Sequence derived from alignment at chr7:105286..109286+ (Nannochloropsis oceanica)
CGCCACCTGGCCATTCCGTCTTCTTCTGCTTTATTTTCGGCTTACACGCC
CTTAGATGGTCCACGTGAATGTTCTTCTCTGCCTCCGTTTTCTTGTCCGT
ACTTTTGCTGGAGAACCTGGATAATGTCAGGGTATTGTTCCAAAAGCGTT
AAGTGAGGTCGCCTGCGCATGGGCCAATAACGTCTCCTTCATCCTTCCTC
CTAGCTCAGTCCCTCGTCGTACCGCACCACGCACACTCATCACATTCTTG
CCCTCCAAATCCTCCAAAAGATACGTGAAGCATGCAGTCCTCCCTTGCCC
TTCTTCGTCGGGCCCGGGGTCCGCTGCTGGTTTCCACCTCCCCTTCCTCC
TCCTCCTTCCTCCTGACAACCAAACGGGGTCTGGCCAACAAGGTCTTCGA
CTCGGCGGCCGAGGCCATCCACGACATCAAGGACGGTACGTCAAACAAGG
AAATAAAAAAGAGGGCGTGGGGAAGGAGGGGAGACGGAAGCAGGGGAGCG
TCGGTGGGAGGGCGAGGAGGGGGATGACGGAGGATGAGTTTGTGTATGCT
TGGGCCATCAGTACGGGGTCGTACCGGCCTATGCTGGTTCAGACACGTAA
TTTAGTATGTATACGACATGGTAGAGCCACATATTGTGTACGAGACGAAG
AGACGCGTGTGCAACCAATCAGTATTGTCAAATAAGTGCTTTGCCAGATT
GGACAAATAAATTAGTGTGGAGTCAAGCCATTTCCTCCTTCTAAAAGCCT
TGACCCTTTAATTCTTCTTCCCCCATACAGGCAGCAAGCTCTGCGTAGGC
GGTTTTGGTCTATGCGGCATCCCGGAGAACCTGATCGCTGCCCTAGTGCA
GAAGGGATCAAAGGATCTGACCTGTGTCTCCAATAATGCTGGTTCGGCGT
GCATATCACCTTCCCTCCCTCCCTCCCTCCCTTCTCGCTGTCACCCTTCA
ACCTTCACTTGCGTGTTAAAAACAAACCAAATGATTTCACCGCTCCCTCC
CTCCCTCCCTTCCGCAGGCGTGGACAACTTCGGCCTCGGGCTCCTCCTCC
GATCCAAGCAGGTGAAGCGGATGATTTCGTCCTACGTAGGCGAGAACAAG
GAGTTCGAGAGACAGTACTTGTCCGGGGAGCTGGAGGTACAAAGAGAGTG
CGCAAATGATAGACAATCTTGTCGGGAGAGCTGGGCGTAGGGAAGGAAGG
GAGCGAAGGAGGGAAGGGTGTTGCTCCTTTTCACCATGACACACACTCAA
TCGTCACATGCCATCTCAAACCCCCCCCCTCTCCCTCCCTCCCTCCCTCC
TTCCCTCTCTCTCTCTACCAGGTGGAGCTCACCCCTCAAGGCTCCTTGGC
TGAGCGTCTTCGCGCCGGAGGGGCTGGTGTTCCCGCATTCTACACCCCCA
CAGCCTACGGCACGTTGGTCCAGGAAGGAGGCTTTCCGATCAAGCTTAAT
GCAGACGGCAGCACCTTGATAGGGAGCGAGCCACGGGAGGTGCGGAAGTT
TCAGGTGCGTAAATACTCCCTCCCTCCCTCCCTCCCTCCCTACCCGCTTC
CCGTTGCTGATCGAGCCAATCCTACCCTCCTTCCCTCCTTCCATCCCTCC
CTCCCTCAGGGCCGGAATTACATCATGGAGGAGGCCATCACGGGCGATTT
TTCGCTCGTCAAGGCATGGAAGGGCGACAGCAAGGGAAACCTCGTCTTTC
GTGGCACTGCCCGTAACTTCAACCCCGACGCCGGTGAGCCCATCCTCCCC
TCCCTCCCTCCCTCCCTCCTCCCTCCCTCCCTACCTACCTACCTACCTCC
CACTCACCCTTCCTGTATCTCGTGCTCTTCTTCATGTCATTTCCTACCGT
GCATATTGCCCTATCTCTCCCACTAACACCCTCCTTCCTAACCTCCCTCC
CTCCCTCTCTCCCTCTCCCTTCCCTTCTCCTCAACCGTCAACCTTTCACC
TCCCCCCCGCCCTCTTAGCCCGTGCCGGCAAGATCTGCATCGCCGAGGTA
GAGGAGCTGCTCCGGCCCGGTGAGCTTCACCCTGACGAGATCCACCTGCC
CGGGATTTACGTCCATCGCATTCTCCGAGGCCCAAGCTACGAGAAACGGA
TCGAGCGCGTAACGGTCACCAAGAAGGGGAGCAAGGAGAGCACGGTACGT
GCCTCCTTCCGCCTCTCCCCCGTGATGCCATCCTTCTCCCTAAGACCAAA
CCAAATAACCGTCACTCCCTCCCTTCCCCCCTCCCTCCCCCCCTCCCTCA
GGGCGGCAAGCTCAACCCTGCCCGTGAGCGCATCGTCAAACGAGCAGCCC
AAGAGTTCCAGGACGGGATGTACGTCAACTTAGGCATCGGCATCCCCGTA
CTCGCCAGTAATTACTTGCCCGAAGGTATGCCCCTCCCTCCCTTCCTCCC
TTCCTTCCTTCCTCCCTCCCTCTGCCCTTAAATAAAATGGGGCCTGGGAA
AGAAGAAAAGCTGACGGACAGAGGGGAGATACCGAAATTTGGAGGTTCAC
ACAAGGACAATAAAACGAGAAGGAGGGAGGGAGGGAGGGAGTTACATGCC
AAATAACTGACGTGTTGCTTTCACACCTTCATCCGCTCTCACACACACAG
GTGTCTCCATCGAGCTGCAGAGTGAAAACGGTCTCCTCGGCATGGGTCCC
TACCCGGAGGTGCGTCCCTCCCTTCGCCCCTCAGCCCCGCTGTTCATCAT
TCCCTCACTCATTCCTCCTTTTCTCCCTCCCTCTCTCTTTTGGTCAGGAA
GGGACGCAGGACGCCGATGTGATCAACGCCGGCAAGGAGACCGTTACCTT
CCTCAAAGGCTCCTCCACCTTCTCCTCCTCCGAGTCCTTCGGCATGATTC
GTGGCGCTAAGGTACGCATAACCGTTCTGTCGCCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGC
CCTCAACCACCTCTTTCGACCGCTTGCTCACGTTGACCTCCTACCCTTCC
CACGCCTCCCTCCTTTCCTCATTCCCTCCCTCTCTCCCAGGTGCATTTGA
CTATGCTAGGCGCCTTGCAGGTGGCTCAGAATGGAGACCTCGCCAACTGG
ATCATACCCGGCAAGATGGTCAAGGGTACGTCCTCCCTCCCTCCGTCCCT
CCCTCCCCCTCTCCCTCTTTTCCTCCCTCCTTGCCAACTTCTGGGATATC
CTGTATCGGTCAGTTTTGTCAAACGTTCAGTATGTGGGAGCGAGGAAGAA
ACGAATCGTCCTCCTTCCCTCCCTCCTTCCCTCCTTCCTTCCCTTATTCC
TCCCCCCTCCTTCCCTCCCTCCCTCGCAGGCATGGGCGGGGCCATGGACC
TTGTGGGGAGCGGAAACCGGGTGGTGGTGACGATGGAGCACACAGCCAAG
GGCGACAGCAAGAAGATCTTGAAAGCGTGCACCTTGCCCCTGACGGGGCC
CAAGGTGAGGGGGAGGGAGGGAAGGAGGGAGGGCAGAGGGAGGGAAGGAG
GGAGGGAGGGAAGGAGGGGAGGGATGGGCGTATGGTATCGTTCTAACCTT
TTACTATTTCTACAGGTGGTGGACCGCATTATCACCGAGCTATGTGTCTT
CGACGTCGATAAGGTACATTTTTTTGGTATCTTTTCTATTTCGCACCCTA
TTTTCGCTTACCCACCTCGGCTCCTAACTCTCTTCCTCCCCCCCTCCTTC
TCCCTGTCTGCAGATCAAAGGCGAGCTGATCCTCGTCGAGATTTTCCCTG
GTGTGACAGTAGAGGAAGTTCGGGCCAAAACGGGGGCGGATTTCCGACAG
GCTGAGGGTGGCGTGAAGGTAGTCAATGTTTAGGCGAGGAGAAGGAAGGA
AGGGTGTGGGGAAGGGAGGTGGTGTATTAAGGGAGAGAGAGAGAGGAGGG
ACAAGAGTTCTATCGAATGAAAAGAAACAACAAGACTATGCCATATGCTA
A back to topCoding sequence (CDS) from alignment at chr7:105286..109286+ >NO07G00260.1 ID=NO07G00260.1|Name=NO07G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr7:105286..109286+ (Nannochloropsis oceanica)
ATGCAGTCCTCCCTTGCCCTTCTTCGTCGGGCCCGGGGTCCGCTGCTGGT
TTCCACCTCCCCTTCCTCCTCCTCCTTCCTCCTGACAACCAAACGGGGTC
TGGCCAACAAGGTCTTCGACTCGGCGGCCGAGGCCATCCACGACATCAAG
GACGGCAGCAAGCTCTGCGTAGGCGGTTTTGGTCTATGCGGCATCCCGGA
GAACCTGATCGCTGCCCTAGTGCAGAAGGGATCAAAGGATCTGACCTGTG
TCTCCAATAATGCTGGCGTGGACAACTTCGGCCTCGGGCTCCTCCTCCGA
TCCAAGCAGGTGAAGCGGATGATTTCGTCCTACGTAGGCGAGAACAAGGA
GTTCGAGAGACAGTACTTGTCCGGGGAGCTGGAGGTGGAGCTCACCCCTC
AAGGCTCCTTGGCTGAGCGTCTTCGCGCCGGAGGGGCTGGTGTTCCCGCA
TTCTACACCCCCACAGCCTACGGCACGTTGGTCCAGGAAGGAGGCTTTCC
GATCAAGCTTAATGCAGACGGCAGCACCTTGATAGGGAGCGAGCCACGGG
AGGTGCGGAAGTTTCAGGGCCGGAATTACATCATGGAGGAGGCCATCACG
GGCGATTTTTCGCTCGTCAAGGCATGGAAGGGCGACAGCAAGGGAAACCT
CGTCTTTCGTGGCACTGCCCGTAACTTCAACCCCGACGCCGCCCGTGCCG
GCAAGATCTGCATCGCCGAGGTAGAGGAGCTGCTCCGGCCCGGTGAGCTT
CACCCTGACGAGATCCACCTGCCCGGGATTTACGTCCATCGCATTCTCCG
AGGCCCAAGCTACGAGAAACGGATCGAGCGCGTAACGGTCACCAAGAAGG
GGAGCAAGGAGAGCACGGGCGGCAAGCTCAACCCTGCCCGTGAGCGCATC
GTCAAACGAGCAGCCCAAGAGTTCCAGGACGGGATGTACGTCAACTTAGG
CATCGGCATCCCCGTACTCGCCAGTAATTACTTGCCCGAAGGTGTCTCCA
TCGAGCTGCAGAGTGAAAACGGTCTCCTCGGCATGGGTCCCTACCCGGAG
GAAGGGACGCAGGACGCCGATGTGATCAACGCCGGCAAGGAGACCGTTAC
CTTCCTCAAAGGCTCCTCCACCTTCTCCTCCTCCGAGTCCTTCGGCATGA
TTCGTGGCGCTAAGGTGCATTTGACTATGCTAGGCGCCTTGCAGGTGGCT
CAGAATGGAGACCTCGCCAACTGGATCATACCCGGCAAGATGGTCAAGGG
CATGGGCGGGGCCATGGACCTTGTGGGGAGCGGAAACCGGGTGGTGGTGA
CGATGGAGCACACAGCCAAGGGCGACAGCAAGAAGATCTTGAAAGCGTGC
ACCTTGCCCCTGACGGGGCCCAAGGTGGTGGACCGCATTATCACCGAGCT
ATGTGTCTTCGACGTCGATAAGATCAAAGGCGAGCTGATCCTCGTCGAGA
TTTTCCCTGGTGTGACAGTAGAGGAAGTTCGGGCCAAAACGGGGGCGGAT
TTCCGACAGGCTGAGGGTGGCGTGAAGGTAGTCAATGTTTAG back to top
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