NO07G00250.1, NO07G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00250.1
Unique NameNO07G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length774
Alignment locationchr7:103438..105031 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:103438..105031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00250.1 vs.
Match: XP_005855889.1 (peroxiredoxin q [Nannochloropsis gaditana CCMP526]; EKU20465.1 peroxiredoxin q [Nannochloropsis gaditana CCMP526]; EWM27365.1 peroxiredoxin q [Nannochloropsis gaditana])

HSP 1 Score: 292.7 bits (748), Expect = 7.600e-76
Identity = 145/179 (81.01%), Postives = 166/179 (92.74%), Query Frame = 0 
Query:    1 MRVISVLAISFLAAAQAFMPTATP-VTRSRGALSMVKVGDVAPDFSLKDQNNKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVFGISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYVIGKDQTVKLMYDNQFAPESHVEKSLMAL 179
            MR+ISVLA+S + AAQAFMP+  P + RSRG ++M+KVGD APDF+LKDQNNK+VKLS+FKGKK VVLFFYPKDDTPGCTKEAKAF+AAL DFKKKGAEVFGISSD+DH+AFV+KYGLQMQLLSDVGGATRKAY+VP+SLFGAL+GRVTYVIGKDQ ++L+YDNQFAPESHVEKSL  L
Sbjct:    1 MRIISVLALSLVMAAQAFMPSNGPSMGRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
The following BLAST results are available for this feature:
BLAST of NO07G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855889.17.600e-7681.01peroxiredoxin q [Nannochloropsis gaditana CCMP526]... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00250NO07G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00250.1NO07G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00250.1.cds1NO07G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00250.1.cds2NO07G00250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00250.1.cds3NO07G00250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00250.1.cds4NO07G00250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00250.1 ID=NO07G00250.1|Name=NO07G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
ACAGTCCACCCCACATTTCCTCAACAAGAACAATGCGCGTGATTTCCGTC
CTCGCCATCTCTTTCTTGGCCGCCGCCCAGGCGTTCATGCCCACGGCCAC
ACCCGTGACCCGCAGCCGCGGTGCCTTATCCATGGTCAAAGTGGGTGATG
TCGCACCGGACTTCTCTCTCAAGGATCAAAATAATAAGATAGTGAAGCTG
TCTTCCTTCAAGGGCAAGAAGCCCGTCGTCCTCTTCTTCTACCCCAAGGA
CGACACGCCCGGGTGCACCAAGGAGGCCAAGGCTTTCAATGCCGCGCTGG
CTGACTTCAAGAAGAAAGGCGCCGAGGTGTTTGGCATCTCCAGTGACCAG
GATCACTCCGCCTTCGTCGAGAAATACGGCCTGCAAATGCAGCTCCTCTC
GGACGTGGGTGGGGCCACCCGCAAGGCCTACAAGGTACCTACCTCCCTCT
TCGGCGCGCTGGAGGGACGTGTGACTTACGTGATTGGCAAGGACCAGACC
GTCAAGCTGATGTACGACAACCAATTCGCCCCTGAGAGCCATGTGGAGAA
GTCACTCATGGCCTTGGTCTAAACGTTCCATTTAAAATTTTGAATTATGT
GTGTTAGTGAATGTTGGAGGTGTGGGGTGTGGGAGAGCGGGAAGTGTTGA
TCAGTGGTACTTGATTTGATTTGCGTGAGCGGACAGGAGGAACAAAAGAT
GTCCCGTGAAAGGGCAAAGAGAGAAGATGAGAAATACATCTATAGAAACA
AGCTAGCAGCCAATGCGAGCGCCA
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protein sequence of NO07G00250.1

>NO07G00250.1-protein ID=NO07G00250.1-protein|Name=NO07G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MRVISVLAISFLAAAQAFMPTATPVTRSRGALSMVKVGDVAPDFSLKDQN
NKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVF
GISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYV
IGKDQTVKLMYDNQFAPESHVEKSLMALV*
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mRNA from alignment at chr7:103438..105031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00250.1 ID=NO07G00250.1|Name=NO07G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp|location=Sequence derived from alignment at chr7:103438..105031- (Nannochloropsis oceanica)
ACAGTCCACCCCACATTTCCTCAACAAGAACAATGCGCGTGATTTCCGTC
CTCGCCATCTCTTTCTTGGCCGCCGCCCAGGCGTTCATGCCCACGGCCAC
ACCCGTGACCCGCAGCCGCGGTGCCTTATCCATGGTCAAAGTAAGTTTAA
TTGACCGGTGATGGTTGTCGCCAATGATTATTTTTTAATGAGACCGTGGA
GTGGGGAAGGGATCGTTACTCACTTACATGATGAGGAAAAATCGGTGCTG
GCGCCTGCACACGTAGGAAAAGGGGTATCCACCCTCTAGCCCCGTATGAC
TGCTTACATGAGTCATTATGCTCGTTCTTGCAAGTGTCTTTCCTCCCTCC
CTTTCCTCCCTCCGTCCCACCAGAATCAGCTTCCACTCCTGAATCACTCT
CACGTCCTCGCGGCGATACCCTTCATATCCCTTCTGACCTTCAAATTCCC
TTCTCCTTCTCTTTTTCCAAACACCATTCACGAAAACGTATGTAGGTGGG
TGATGTCGCACCGGACTTCTCTCTCAAGGATCAAAATAATAAGATAGTGA
AGCTGTCTTCCTTCAAGGGCAAGAAGCCCGTCGTCCTCTTCTTCTACCCC
AAGGACGACACGCCCGGGTGCACCAAGGGTAAGTCACGAAATAAAAGGGA
GAAAGGAGATAGCTGTTAAGCGTGGATTGGAGTAGGTGTGCGAGTGCAAG
GGAGGTGGAGTGTGTGACACACGAGGCGTTTGGTCGAGTTCTGTCACCTC
CCCACACGGACACACACCCACACTTAAAGAAGACAATCTGTATTACCCAT
TCACATTCCTTTCTCTGCACCTCTCTCCCCATCCCCACCATGACTACAGA
GGCCAAGGCTTTCAATGCCGCGCTGGCTGACTTCAAGAAGAAAGGCGCCG
AGGTGTTTGGCATCTCCAGTGTACGTACTTCTGCTGCCATAACGGCAAAG
AACCAGAGGGGGTCGCGAGGGGACGAGAAAAGTAGAGAGATTTCTTTCGT
CAAGTCTAGAGTCAATTCAATGATTAAAGTCGCAGAGTCGTCAAGGAATG
TCGTCAAGGGTGACCTGAATTCAAAATCTGTGTATTCATTTCAAAACCGT
GTGCATCCATTCTCTCTCCTCATTCGCCCTCCCATCCTCCGTTTCCCCCC
CTCCCCCATCGCAGGACCAGGATCACTCCGCCTTCGTCGAGAAATACGGC
CTGCAAATGCAGCTCCTCTCGGACGTGGGTGGGGCCACCCGCAAGGCCTA
CAAGGTACCTACCTCCCTCTTCGGCGCGCTGGAGGGACGTGTGACTTACG
TGATTGGCAAGGACCAGACCGTCAAGCTGATGTACGACAACCAATTCGCC
CCTGAGAGCCATGTGGAGAAGTCACTCATGGCCTTGGTCTAAACGTTCCA
TTTAAAATTTTGAATTATGTGTGTTAGTGAATGTTGGAGGTGTGGGGTGT
GGGAGAGCGGGAAGTGTTGATCAGTGGTACTTGATTTGATTTGCGTGAGC
GGACAGGAGGAACAAAAGATGTCCCGTGAAAGGGCAAAGAGAGAAGATGA
GAAATACATCTATAGAAACAAGCTAGCAGCCAATGCGAGCGCCA
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Coding sequence (CDS) from alignment at chr7:103438..105031-

>NO07G00250.1 ID=NO07G00250.1|Name=NO07G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr7:103438..105031- (Nannochloropsis oceanica)
ATGCGCGTGATTTCCGTCCTCGCCATCTCTTTCTTGGCCGCCGCCCAGGC
GTTCATGCCCACGGCCACACCCGTGACCCGCAGCCGCGGTGCCTTATCCA
TGGTCAAAGTGGGTGATGTCGCACCGGACTTCTCTCTCAAGGATCAAAAT
AATAAGATAGTGAAGCTGTCTTCCTTCAAGGGCAAGAAGCCCGTCGTCCT
CTTCTTCTACCCCAAGGACGACACGCCCGGGTGCACCAAGGAGGCCAAGG
CTTTCAATGCCGCGCTGGCTGACTTCAAGAAGAAAGGCGCCGAGGTGTTT
GGCATCTCCAGTGACCAGGATCACTCCGCCTTCGTCGAGAAATACGGCCT
GCAAATGCAGCTCCTCTCGGACGTGGGTGGGGCCACCCGCAAGGCCTACA
AGGTACCTACCTCCCTCTTCGGCGCGCTGGAGGGACGTGTGACTTACGTG
ATTGGCAAGGACCAGACCGTCAAGCTGATGTACGACAACCAATTCGCCCC
TGAGAGCCATGTGGAGAAGTCACTCATGGCCTTGGTCTAA
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Synonyms
Publications