NO07G00240.1, NO07G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00240.1
Unique NameNO07G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length678
Alignment locationchr7:102686..103363 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:102686..103363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00240.1 vs.
Match: EWM27364.1 (hypothetical protein Naga_100584g2 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 6.800e-8
Identity = 64/178 (35.96%), Postives = 90/178 (50.56%), Query Frame = 0
Query:   15 SASSPRPTAPAPTTTRR-VPATTTAGA----------FSSVPGTTSAAGRSTTS-LRTPPIRGAGT-STTRRTPITTQQGGTPSSLGAARRVPRSIGEEESELMLDDNGEEEVRPVRRFHLPNETQPPDHTEKWIALAKQTTVDAAFVAAMDRSMVEEVCENLKEVAKSLEEDRWMYE 180
            S+S+ R   PA   + R VP   T GA          +++VPG  +    S TS L TP +RGA   S T R   TT Q   PS+   A+R+ R + E    +    +G+E  +   +    +E    D T+ W+ALAK    D A  A+ D S V +VC  LK++A SL+ED+WMYE
Sbjct:    8 SSSAARVPVPASAVSNRGVPTPRTRGAHSNPASLPGGYANVPGNVAIESVSQTSTLTTPVLRGASAESLTARRIRTTYQRLNPSA-SPAQRIRRDVAERRDRMEESPDGQETNQ---QCPWSDENSSQDKTDAWVALAKDEESDQAMHASWDHSTVTDVCATLKKLAASLDEDKWMYE 181          
The following BLAST results are available for this feature:
BLAST of NO07G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27364.16.800e-835.96hypothetical protein Naga_100584g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00240NO07G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00240.1NO07G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00240.1.cds1NO07G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00240.1 ID=NO07G00240.1|Name=NO07G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=678bp
ACACACATACAGCATCCCTTCCCAGAAAGATCTCTTGGCGTCAGGACCAG
CATTTTATATTCCATCTGTTCGCACCCTACATTCCTGCCTGTCGCATCGC
CTTATCATGAGCGGAACCAGCGCTTCTTCACGTGCAGCGCCTTCTGTCTC
CGCGTCGTCCCCTCGTCCCACGGCCCCTGCACCGACCACCACTCGCCGTG
TGCCCGCCACGACCACAGCCGGGGCATTTTCTTCCGTACCAGGAACCACT
TCAGCCGCCGGGCGCAGCACCACGAGCTTGCGCACCCCTCCCATCCGCGG
TGCAGGCACAAGCACTACGAGGCGGACGCCAATAACAACACAACAAGGCG
GCACACCTTCTTCATTGGGCGCCGCGCGACGGGTACCACGCAGTATAGGC
GAGGAGGAGAGCGAGCTCATGCTTGACGACAATGGCGAGGAAGAAGTACG
GCCAGTTCGTCGATTCCACCTACCGAATGAAACCCAACCACCAGACCACA
CCGAAAAATGGATTGCTCTTGCGAAGCAAACGACGGTGGATGCGGCCTTT
GTAGCAGCGATGGACCGATCGATGGTGGAAGAGGTTTGTGAGAATCTGAA
AGAGGTGGCGAAATCCCTGGAGGAGGACAGATGGATGTATGAATGAATGA
TGGAAGGAAGGGAGGGAGGGAGGGAGGG
back to top

protein sequence of NO07G00240.1

>NO07G00240.1-protein ID=NO07G00240.1-protein|Name=NO07G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MSGTSASSRAAPSVSASSPRPTAPAPTTTRRVPATTTAGAFSSVPGTTSA
AGRSTTSLRTPPIRGAGTSTTRRTPITTQQGGTPSSLGAARRVPRSIGEE
ESELMLDDNGEEEVRPVRRFHLPNETQPPDHTEKWIALAKQTTVDAAFVA
AMDRSMVEEVCENLKEVAKSLEEDRWMYE*
back to top

mRNA from alignment at chr7:102686..103363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00240.1 ID=NO07G00240.1|Name=NO07G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=678bp|location=Sequence derived from alignment at chr7:102686..103363+ (Nannochloropsis oceanica)
ACACACATACAGCATCCCTTCCCAGAAAGATCTCTTGGCGTCAGGACCAG CATTTTATATTCCATCTGTTCGCACCCTACATTCCTGCCTGTCGCATCGC CTTATCATGAGCGGAACCAGCGCTTCTTCACGTGCAGCGCCTTCTGTCTC CGCGTCGTCCCCTCGTCCCACGGCCCCTGCACCGACCACCACTCGCCGTG TGCCCGCCACGACCACAGCCGGGGCATTTTCTTCCGTACCAGGAACCACT TCAGCCGCCGGGCGCAGCACCACGAGCTTGCGCACCCCTCCCATCCGCGG TGCAGGCACAAGCACTACGAGGCGGACGCCAATAACAACACAACAAGGCG GCACACCTTCTTCATTGGGCGCCGCGCGACGGGTACCACGCAGTATAGGC GAGGAGGAGAGCGAGCTCATGCTTGACGACAATGGCGAGGAAGAAGTACG GCCAGTTCGTCGATTCCACCTACCGAATGAAACCCAACCACCAGACCACA CCGAAAAATGGATTGCTCTTGCGAAGCAAACGACGGTGGATGCGGCCTTT GTAGCAGCGATGGACCGATCGATGGTGGAAGAGGTTTGTGAGAATCTGAA AGAGGTGGCGAAATCCCTGGAGGAGGACAGATGGATGTATGAATGAATGA TGGAAGGAAGGGAGGGAGGGAGGGAGGG
back to top

Coding sequence (CDS) from alignment at chr7:102686..103363+

>NO07G00240.1 ID=NO07G00240.1|Name=NO07G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr7:102686..103363+ (Nannochloropsis oceanica)
ATGAGCGGAACCAGCGCTTCTTCACGTGCAGCGCCTTCTGTCTCCGCGTC
GTCCCCTCGTCCCACGGCCCCTGCACCGACCACCACTCGCCGTGTGCCCG
CCACGACCACAGCCGGGGCATTTTCTTCCGTACCAGGAACCACTTCAGCC
GCCGGGCGCAGCACCACGAGCTTGCGCACCCCTCCCATCCGCGGTGCAGG
CACAAGCACTACGAGGCGGACGCCAATAACAACACAACAAGGCGGCACAC
CTTCTTCATTGGGCGCCGCGCGACGGGTACCACGCAGTATAGGCGAGGAG
GAGAGCGAGCTCATGCTTGACGACAATGGCGAGGAAGAAGTACGGCCAGT
TCGTCGATTCCACCTACCGAATGAAACCCAACCACCAGACCACACCGAAA
AATGGATTGCTCTTGCGAAGCAAACGACGGTGGATGCGGCCTTTGTAGCA
GCGATGGACCGATCGATGGTGGAAGAGGTTTGTGAGAATCTGAAAGAGGT
GGCGAAATCCCTGGAGGAGGACAGATGGATGTATGAATGA
back to top
Synonyms
Publications