NO07G00230.1, NO07G00230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00230.1
Unique NameNO07G00230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1507
Alignment locationchr7:99161..102074 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:99161..102074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00230.1 vs.
Match: GAX27681.1 (V-type H+-transporting ATPase 21kDa proteolipid subunit [Fistulifera solaris]; GAX27220.1 V-type H+-transporting ATPase 21kDa proteolipid subunit [Fistulifera solaris])

HSP 1 Score: 262.7 bits (670), Expect = 8.900e-67
Identity = 135/181 (74.59%), Postives = 154/181 (85.08%), Query Frame = 0 
Query:    9 CVSPLCNLGWVEVLTSMSPYGWGQFGVAFALGLSIVGAAWGIWTTGSSLVGAAIKAPRIKSKNLVSIIFCEATAIYGVILAIILLNKVQAPDGEYLFDQSTWNWADMYHAGYSTFFAGVSVGLTNIASGVAVGIAGSSCALADAQDGTLFVKILIVEIFASALGIFGIIVGIIQSNAGSFP 190
            C S  CN GW EVLT MSPYG+  FGVAF LGLSIVGAAWGIW TGSSLVGAA+KAPRI+SKNL+S+IFCEATAIYGVI+AIIL NK++ P+    +  + W++   Y+AGY  F AG+SVGLTNIASGV+VGIAGSSCA+ADAQD +LFVKILIVEIFASALGIFGIIVGIIQSNA +FP
Sbjct:    8 CKSDFCNAGWAEVLTHMSPYGFANFGVAFGLGLSIVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKIKEPELADSYLSANWDFNGFYYAGYGMFSAGLSVGLTNIASGVSVGIAGSSCAIADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNACTFP 188
The following BLAST results are available for this feature:
BLAST of NO07G00230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX27681.18.900e-6774.59V-type H+-transporting ATPase 21kDa proteolipid su... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00230NO07G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00230.1NO07G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00230.1.cds1NO07G00230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00230.1.cds2NO07G00230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00230.1.cds3NO07G00230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00230.1.cds4NO07G00230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00230.1.cds5NO07G00230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00230.1.cds6NO07G00230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00230.1.cds7NO07G00230.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00230.1 ID=NO07G00230.1|Name=NO07G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp
TACGTGCAGCGGAGCGGGATCTGTGGATATGGGTGGGTCGGTGGCGTGAG
TGGAGCAAGAACTTCGCACTAAGGGAGCGGCATCACACCATCGTCATGTT
CAGTAAGAGCAAAAGAAAGCTAGCTCTGTTCCCACCACCGTCTCCTCCAT
CCTCTTCAGTCGAACGTGTGCTGACGATCGATCCAGCGTGGCAGCTGCGT
CCATCGTGGAGGAGTGAAGCAAAGCGTCGTGGATGTATGGGCACGTAGAC
GGAAGCCTCAGGCCATGGCATTGATGACAATGGGAAGGGGAGCGAGTGGT
GTGTGTCTAGAAGCCATGCAGCAAGCACTACAGCCCCGGAAAAGACGAGG
AGCTCCGGTAGGGTAGTCTCGTGCTGCCTTGGATGTGGGATCGTAAGGGA
GGGAAGCGTTGTCGTGTGTTGCCGCGGGAGGACAGAGGCACCCACAGAGC
GTGACCAGATAGCGATGATAGTTTGTGCGCATTATTTTGTCTTCTCGTCC
CACGGGGAAACCAGACACACAATGCCCTCCTCACGGGCAAGGACCGCCTG
TGTCCATGGCATTACGGGACTGGTGGTCATGATGGCGGATGAATTGTGGT
GTGGCATCGTCCAAATGTTAGACACGACTTGCTGCAGGCGTCCCCTCAAC
TAGACCAAGAGGAAGGAAAAGATGCGATCGCTTGACTTGCAGACATTCTT
CCCCTCACGCCCTGCCCCTCTTTCCACACCCATCCACAACTACCCTCCTA
AGGGTCGACAGAGGCGTTAGCCATGGTGAGGGCCGATGAGATCAACTGCG
TATCCCCGCTCTGCAACCTGGGATGGGTCGAGGTTCTCACGTCCATGTCT
CCCTATGGATGGGGCCAGTTCGGCGTGGCCTTTGCGCTCGGCCTAAGCAT
CGTGGGCGCGGCCTGGGGGATTTGGACGACCGGCTCCTCCCTCGTGGGTG
CGGCCATCAAAGCCCCTCGGATCAAGAGCAAGAATCTGGTGTCCATCATC
TTCTGCGAGGCCACGGCCATCTACGGGGTCATTCTGGCCATCATCCTCCT
GAACAAGGTGCAAGCCCCCGACGGCGAGTACCTTTTCGATCAGTCAACCT
GGAACTGGGCTGATATGTACCACGCCGGTTACTCCACCTTCTTCGCGGGA
GTCTCGGTGGGTCTGACCAACATCGCCTCGGGCGTTGCTGTGGGCATCGC
CGGCTCATCATGCGCGCTGGCGGACGCACAAGATGGGACGCTGTTTGTGA
AAATTCTGATTGTCGAAATTTTTGCGTCCGCTCTCGGCATTTTCGGGATC
ATTGTCGGCATCATCCAATCAAACGCGGGGTCCTTCCCGCACTAAATCAC
AAGCTTCCCATCTCCGCGGAAGTCGGAGAGACTTGCAGGGCCTGTAGAAA
GAAGGGGGATTGAGATAGAGGGAAAAGGGGAAGTGAACACAAATTGAGAG
AGAGAGAGAGAGGACGGAAATGGTCCCACAAAAGAAGAAAAATTTGAGCA
GTCGATG
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protein sequence of NO07G00230.1

>NO07G00230.1-protein ID=NO07G00230.1-protein|Name=NO07G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MVRADEINCVSPLCNLGWVEVLTSMSPYGWGQFGVAFALGLSIVGAAWGI
WTTGSSLVGAAIKAPRIKSKNLVSIIFCEATAIYGVILAIILLNKVQAPD
GEYLFDQSTWNWADMYHAGYSTFFAGVSVGLTNIASGVAVGIAGSSCALA
DAQDGTLFVKILIVEIFASALGIFGIIVGIIQSNAGSFPH*
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mRNA from alignment at chr7:99161..102074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00230.1 ID=NO07G00230.1|Name=NO07G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2914bp|location=Sequence derived from alignment at chr7:99161..102074+ (Nannochloropsis oceanica)
TACGTGCAGCGGAGCGGGATCTGTGGATATGGGTGGGTCGGTGGCGTGAG
TGGAGCAAGAACTTCGCACTAAGGGAGCGGCATCACACCATCGTCATGTT
CAGTAAGAGCAAAAGAAAGCTAGCTCTGTTCCCACCACCGTCTCCTCCAT
CCTCTTCAGTCGAACGTGTGCTGACGATCGATCCAGCGTGGCAGCTGCGT
CCATCGTGGAGGAGTGAAGCAAAGCGTCGTGGATGTATGGGCACGTAGAC
GGAAGCCTCAGGCCATGGCATTGATGACAATGGGAAGGGGAGCGAGTGGT
GTGTGTCTAGAAGCCATGCAGCAAGCACTACAGCCCCGGAAAAGACGAGG
AGCTCCGGTAGGGTAGTCTCGTGCTGCCTTGGATGTGGGATCGTAAGGGA
GGGAAGCGTTGTCGTGTGTTGCCGCGGGAGGACAGAGGCACCCACAGAGC
GTGACCAGATAGCGATGATAGTTTGTGCGCATTATTTTGTCTTCTCGTCC
CACGGGGAAACCAGACACACAATGCCCTCCTCACGGGCAAGGACCGCCTG
TGTCCATGGCATTACGGGACTGGTGGTCATGATGGCGGATGAATTGTGGT
GTGGCATCGTCCAAATGTTAGACACGACTTGCTGCAGGCGTCCCCTCAAC
TAGACCAAGAGGAAGGAAAAGATGCGATCGCTTGACTTGCAGACATTCTT
CCCCTCACGCCCTGCCCCTCTTTCCACACCCATCCACAACTACCCTCCTA
AGGGTCGACAGAGGCGTTAGCCATGGTGAGGGCCGATGAGATCAACTGCG
TATCCCCGCTCTGCAACCTGGGTGAGTGTCATGGGAGGGAGAGAGAAAAA
GAGGGAGAAGGAGGCGGGGTTAGTATGTGACGAGGACAGCGGCGCATCAT
GCACGGGAAGAGGGATGAAGGAGGGGGACAAGGGGTACGGTGTAATGCAG
ACACGCTCGGCGGATGCCGCATGCGGTTTTGGAGTCAGGGTCGGGAGATG
TGTTGCTTCGGTATGCACGCCGTGATGTCCACAGGCTGTAATGGTGTGGT
GCTCGCACGAGAGAGAGGGAAGCCAGACCAAGAGTCGTACATCCCCACGC
AGCGAGAGAAGCACAGGAATTCTTCAAGGTGTATACCGAGGCCAAACCGA
GACTGCCCAAGCCCAAGCGCAGCATCTCCTCATCCACTTCCACGTCGTCT
CGCAACCGAAATACCGACCCCCTCCCACCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCCCGTTCACTCAGGATGGGTCGAGGTTCTCACGTCCATGTCTC
CCTATGGATGGGGCCAGTTCGGCGTGGCCTTTGCGCTCGGCCTAAGCATC
GTGGGCGCGGCCTGGGGGATTTGGACGACCGGTCAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGCGGGAGGGGGGTGACGGCAGCGCTATAAATA
GCGGAAAGCAACCATGCTATCTCTGTTGGCTAGCATCCATCTACAGGGTT
CTCTTCCTGCTGATGTTCCTGCAGTTGTGCAAATTGGCTGTGGAAAGTCG
ATGCACAGGAACGTAATATCCGTCTCACCCTCCCTTCCTCCCTTCCTCCC
TCCCCTCCTCCCTTCCTCAGGCTCCTCCCTCGTGGGTGCGGCCATCAAAG
CCCCTCGGATCAAGAGCAAGAATCTGGTGTCCATCATCTTCTGCGAGGCC
ACGGCCATCTACGGGGTCATTCTGGCCATCATCCTCCTGAACAAGGTGGG
AAGGGAGGGAGGGAGGGAGGGAGGGTGGGGGGTAGATCCACTGTTCCTTT
TTTATTTAAGGATCGCCTCACCAACACCTTGTCCCTCTCTCCCCCCCTCC
CTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCCCTAGGTGCAAGCCC
CCGACGGCGAGTACCTTTTCGATCAGTCAACCTGGAACTGGGCTGATATG
TACCACGCCGGTACGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGGACAGT
GATATTGCGAGGGACTGCTTGGGGATGAGAAGCGCCTTGGAAGGTCGAGA
GTAGTTAAGCATGACGGATCCACCTCCCCCTCCCTCCCTCCCTCTTTCCC
CTCCCTCCCTGCAGGTTACTCCACCTTCTTCGCGGGAGTCTCGGTGGGTC
TGACCAACATCGCCTCGGGCGTTGCTGTGGGCATCGCCGGCTCATCATGC
GCGCTGGCGGACGCACAAGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGAGGAACCGTGGCTCAGACTTGCTTGA
GGCCGTAGGAAGAGGTGCCAGGCATCAATTTCTGGTCCCTCCATGAGCCA
AGTCTTGCCCAAACCCACCGTGCTTGCACCTCTCCTCCCTCCCTCCCTCC
CTCCCTCCTTTATCTCTCACTCAGGATGGGACGCTGTTTGTGAAAATTCT
GATTGTCGAAATTTTTGCGTCCGCTCTCGGCATTTTCGGGATCATTGTCG
GGTAAGAAGAGGCGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGAAGGGCG
GGTGTGGTGTGCGTCATGGACGGATTCCGTCATCGAGGTCGAGCCTTCCA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGAGGGT
GTACAAGTGACTGACTCTTGTACCTCTCTCTCCTTCCCTCCCTCCCCTCC
TCTCTTCCCCTGCAGCATCATCCAATCAAACGCGGGGTCCTTCCCGCACT
AAATCACAAGCTTCCCATCTCCGCGGAAGTCGGAGAGACTTGCAGGGCCT
GTAGAAAGAAGGGGGATTGAGATAGAGGGAAAAGGGGAAGTGAACACAAA
TTGAGAGAGAGAGAGAGAGGACGGAAATGGTCCCACAAAAGAAGAAAAAT
TTGAGCAGTCGATG
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Coding sequence (CDS) from alignment at chr7:99161..102074+

>NO07G00230.1 ID=NO07G00230.1|Name=NO07G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr7:99161..102074+ (Nannochloropsis oceanica)
ATGGTGAGGGCCGATGAGATCAACTGCGTATCCCCGCTCTGCAACCTGGG
ATGGGTCGAGGTTCTCACGTCCATGTCTCCCTATGGATGGGGCCAGTTCG
GCGTGGCCTTTGCGCTCGGCCTAAGCATCGTGGGCGCGGCCTGGGGGATT
TGGACGACCGGCTCCTCCCTCGTGGGTGCGGCCATCAAAGCCCCTCGGAT
CAAGAGCAAGAATCTGGTGTCCATCATCTTCTGCGAGGCCACGGCCATCT
ACGGGGTCATTCTGGCCATCATCCTCCTGAACAAGGTGCAAGCCCCCGAC
GGCGAGTACCTTTTCGATCAGTCAACCTGGAACTGGGCTGATATGTACCA
CGCCGGTTACTCCACCTTCTTCGCGGGAGTCTCGGTGGGTCTGACCAACA
TCGCCTCGGGCGTTGCTGTGGGCATCGCCGGCTCATCATGCGCGCTGGCG
GACGCACAAGATGGGACGCTGTTTGTGAAAATTCTGATTGTCGAAATTTT
TGCGTCCGCTCTCGGCATTTTCGGGATCATTGTCGGCATCATCCAATCAA
ACGCGGGGTCCTTCCCGCACTAA
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Synonyms
Publications