NO07G00200.1, NO07G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00200.1
Unique NameNO07G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1223
Alignment locationchr7:89319..91503 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:89319..91503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00200.1 vs.
Match: XP_005852705.1 (kelch repeat protein, partial [Nannochloropsis gaditana CCMP526]; EKU23127.1 kelch repeat protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 304.7 bits (779), Expect = 3.700e-79
Identity = 140/185 (75.68%), Postives = 159/185 (85.95%), Query Frame = 0 
Query:    1 MVFSWRCLLPQTATTPVHLTRSSHAISYVAATNTIYLYGGENQPRIPVDNVLYSFSLSDPAAGWAPVNLASSS-SVCPPERIAPGMVAMDKTLYVMGGRQGITMDEGPLDDLWAFDTQSKTWTCVMEHTEEKGGPSKRSFHQMVGFEGKLYVFGGCGAKGRMRDLYAFDIGKGTWEALPSKEEMK 185
            MVFSWRCLLP T+ TP HL+RSSHA+SYVAAT ++YLYGGEN+PR+PVDNVLYS SLSDPA GW PV+LA+SS SVCP ERIAPGM A+ +TLYV GGRQGI M+EGPLDDLWAF+T +K WTC+MEHTEEKGGPSKRSFHQMV  + KLYVFGGCGAKGRM DLYA+DI K  WE  P ++ MK
Sbjct:    1 MVFSWRCLLPHTSATPEHLSRSSHAVSYVAATKSLYLYGGENKPRVPVDNVLYSLSLSDPATGWVPVDLAASSASVCPVERIAPGMAAVGETLYVFGGRQGIAMEEGPLDDLWAFNTTTKAWTCLMEHTEEKGGPSKRSFHQMVALDDKLYVFGGCGAKGRMHDLYAYDIQKACWEEFPEEKAMK 185
The following BLAST results are available for this feature:
BLAST of NO07G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852705.13.700e-7975.68kelch repeat protein, partial [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00200NO07G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00200.1NO07G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00200.1.cds1NO07G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00200.1.cds2NO07G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00200.1.cds3NO07G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00200.1.cds4NO07G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00200.1.cds5NO07G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00200.1.cds6NO07G00200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00200.1 ID=NO07G00200.1|Name=NO07G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
ACAGCCTCAACCCCCAGTATCAAGGTACCCTTACTCATGGTGTTTTCCTG
GCGCTGCCTCCTTCCCCAGACGGCCACCACTCCCGTGCACCTCACCCGTT
CGTCGCACGCTATTTCCTACGTGGCGGCCACCAACACCATTTACCTTTAT
GGCGGCGAGAACCAGCCCCGCATCCCTGTGGACAACGTGCTCTACTCCTT
CAGCTTGTCGGACCCCGCTGCTGGCTGGGCACCCGTCAATCTTGCCTCGT
CGTCGTCCGTGTGCCCGCCCGAGCGCATTGCCCCGGGCATGGTGGCGATG
GACAAGACGCTGTATGTGATGGGGGGGCGCCAAGGGATAACGATGGACGA
AGGACCGCTCGATGATTTATGGGCTTTTGACACTCAAAGCAAGACCTGGA
CGTGTGTGATGGAACACACAGAGGAGAAAGGTGGGCCCAGCAAGAGAAGC
TTCCACCAAATGGTGGGATTCGAGGGCAAGCTCTACGTGTTCGGTGGATG
TGGCGCCAAAGGCCGCATGCGCGATTTGTACGCATTTGATATCGGAAAGG
GCACGTGGGAGGCGTTGCCGTCGAAGGAGGAGATGAAGGGACGTGGCGGC
GCGGCAGTGACAGCAGTGGATGGGAAGGTTTTACTGCTGGGGGGGTTTGC
CGGGGAAGAGGCCAGAGACATGTGGGCTTTTGACTTGGAGAAGAAGGAGT
GGGAGGACTGGTCGTCGTACAGCACGGGCCTGGAGCCTCGCAGTGTTTTT
GGGCTGCAGCCGGTGCAAGGGGGAAAAAGCCTCGTCCTCTTCGGTGGGGA
GGTTGACCCGTCATCCGCTGGGCATATGGGCGCGGGCGGCTTCGCGGGGG
ACACGCTCCTCTTCTCGCTCACGGACAAGACGCAAGGATTCACGTCGCCC
CTACCTTCCTCCCCTCCCTCCCCCAGTCCCTCCCCTCGGGGTTGGTACGG
GCATTGCGTGACAAAGGAGGGGAGTGTCGTGGTAGTGGGCGGATTGGCGC
CCGACAACTCGCGGCTGGGCGATGTATGGGTGCTGGAGGAGGAGGGAAAG
GAGGGAGGAGGGAAAGAGGAGCTATAGAAGAGTCGAAAAACAAATTCAGT
TTTGAGCGAGGCATGGAGGAAGGGAAGGAGAGTGGAAAGATGAAGACAGG
CCAGCAAAAATAAAGAGGGGGGTGAGCATGAGCGGGCATGAACATATACA
TGAATAAATAAGTGGATGGATGA
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protein sequence of NO07G00200.1

>NO07G00200.1-protein ID=NO07G00200.1-protein|Name=NO07G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MVFSWRCLLPQTATTPVHLTRSSHAISYVAATNTIYLYGGENQPRIPVDN
VLYSFSLSDPAAGWAPVNLASSSSVCPPERIAPGMVAMDKTLYVMGGRQG
ITMDEGPLDDLWAFDTQSKTWTCVMEHTEEKGGPSKRSFHQMVGFEGKLY
VFGGCGAKGRMRDLYAFDIGKGTWEALPSKEEMKGRGGAAVTAVDGKVLL
LGGFAGEEARDMWAFDLEKKEWEDWSSYSTGLEPRSVFGLQPVQGGKSLV
LFGGEVDPSSAGHMGAGGFAGDTLLFSLTDKTQGFTSPLPSSPPSPSPSP
RGWYGHCVTKEGSVVVVGGLAPDNSRLGDVWVLEEEGKEGGGKEEL*
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mRNA from alignment at chr7:89319..91503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00200.1 ID=NO07G00200.1|Name=NO07G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2185bp|location=Sequence derived from alignment at chr7:89319..91503+ (Nannochloropsis oceanica)
ACAGCCTCAACCCCCAGTATCAAGGTACCCTTACTCATGGTGTTTTCCTG
GCGCTGCCTCCTTCCCCAGACGGCCACCACTCCCGTGCACCTCACCCGTT
CGTCGCACGCTATTTCCTACGTGGCGGCCACCAACACCATTTACCTTTAT
GGCGGCGAGAACCAGCCCCGCATCCCTGTGGACAACGTGCTCTACTCCTT
CAGCTTGTCGGACCCCGCTGCTGGCTGGGCACCCGTCAATCTTGCCTCGT
CGTCGTCCGTGTGCCCGCCCGAGCGCATTGCCCCGGGCATGGTGGCGATG
GACAAGACGCTGTATGTGATGGGGGGGCGCCAAGGGATAACGGTACGTGT
GCGCGGTGATGCTTGGGTGGGGAGGGTGTGAGTGTCGGTCAGGATGCTCA
GACGAACATGTTTAGAGCCTTTCTTACAATTTCCACCAGCCTCAATCCCC
CTTTACTCTTTCAAAGTAAATCGAGCAAGCACCTTGGGGGCCTCTGTCAA
GTTAGCACGATCTCGGTCCCGCATTTCCTCACCCCTTCCCTCCCTCCCTC
CCTTTCTCGCTCCCTCATCCCTCCCTCCGGACTGCTAGATGGACGAAGGA
CCGCTCGATGATTTATGGGCTTTTGACACTCAAAGCAAGACCTGGACGTG
TGTGATGGAACACACAGAGGAGAAAGGTGGGCCCAGCAAGAGAAGCTTCC
ACCAAATGGTAACCAAGGGAGGAAAGGAGGGAGGGAGGGAAGGAAGGAAG
GGATGGAGTGAGCGCTTGGCAAAACCCGTAAAGCGTTCGACTACTCGTGA
TCCTGACTGATAACTCCACTGTCATCTATCTCTCCCCCTTCCATCTCTCC
TTTCATCCCCTTCTTCCTCTTGTCTCCCCCTCCTTCTCCCAGGTGGGATT
CGAGGGCAAGCTCTACGTGTTCGGTGGATGTGGCGCCAAAGGCCGCATGC
GCGATTTGTACGCATTTGATATCGGAAAGGGCACGTGGGAGGCGTTGCCG
TCGAAGGAGGAGATGAAGGTAGGAGGAGAGAAGGAGAGAGGGAGGGAGGG
GAAGAAGGGAGGGAGGGAGGGAGAGAGATGAGGGACAACATTCCTCCGTC
ATTTTGGGTCGCCATCACGCCATGGCCATAGCGCGGTCCCTTCGAGCACC
CCTTCCTTTCCTCCCTCCTTCCAATCTCCCTCGCTTTCACCCCCTTCCCC
ATCCATCTCCTCCCTCCCAGGGACGTGGCGGCGCGGCAGTGACAGCAGTG
GATGGGAAGGTTTTACTGCTGGGGGGGTTTGCCGGGGAAGAGGCCAGAGA
CATGTGGGCTTTTGACTTGGAGAAGAAGGAGTGGGAGGACTGGTCGTCGT
ACAGGTAAGGAGGGAGGGAGGGAGGGAGGGAGGAAGCGTCTAGACTTTCT
CAGGAAACACCTTGCTCATCGCCTCCCTTCCCGCCCTCCCTCCCTCCCTC
CTTCCCTCCCTCTCTTCCATTTCTTGTCTCTTTTCTGCTTTCAGCACGGG
CCTGGAGCCTCGCAGTGTTTTTGGGCTGCAGCCGGTGCAAGGGGGAAAAA
GCCTCGTCCTCTTCGGTGGGGAGGTTGACCCGTCATCCGCTGGGCATATG
GTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AAGGCAAGGTGGTTGAGAGGTATGGCTTGATGCTTATACATCTCCTTCTT
TTCCATTTCTCTTTTGTTTTATGACATATTATTTATTTCGATATGTATAC
TAGTGCGAATATGGCATTAATACTTATTTACCCACACCAGGGCGCGGGCG
GCTTCGCGGGGGACACGCTCCTCTTCTCGCTCACGGACAAGACGCAAGGA
TTCACGTCGCCCCTACCTTCCTCCCCTCCCTCCCCCAGTCCCTCCCCTCG
GGGTTGGTACGGGCATTGCGTGACAAAGGAGGGGAGTGTCGTGGTAGTGG
GCGGATTGGCGCCCGACAACTCGCGGCTGGGCGATGTATGGGTGCTGGAG
GAGGAGGGAAAGGAGGGAGGAGGGAAAGAGGAGCTATAGAAGAGTCGAAA
AACAAATTCAGTTTTGAGCGAGGCATGGAGGAAGGGAAGGAGAGTGGAAA
GATGAAGACAGGCCAGCAAAAATAAAGAGGGGGGTGAGCATGAGCGGGCA
TGAACATATACATGAATAAATAAGTGGATGGATGA
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Coding sequence (CDS) from alignment at chr7:89319..91503+

>NO07G00200.1 ID=NO07G00200.1|Name=NO07G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr7:89319..91503+ (Nannochloropsis oceanica)
ATGGTGTTTTCCTGGCGCTGCCTCCTTCCCCAGACGGCCACCACTCCCGT
GCACCTCACCCGTTCGTCGCACGCTATTTCCTACGTGGCGGCCACCAACA
CCATTTACCTTTATGGCGGCGAGAACCAGCCCCGCATCCCTGTGGACAAC
GTGCTCTACTCCTTCAGCTTGTCGGACCCCGCTGCTGGCTGGGCACCCGT
CAATCTTGCCTCGTCGTCGTCCGTGTGCCCGCCCGAGCGCATTGCCCCGG
GCATGGTGGCGATGGACAAGACGCTGTATGTGATGGGGGGGCGCCAAGGG
ATAACGATGGACGAAGGACCGCTCGATGATTTATGGGCTTTTGACACTCA
AAGCAAGACCTGGACGTGTGTGATGGAACACACAGAGGAGAAAGGTGGGC
CCAGCAAGAGAAGCTTCCACCAAATGGTGGGATTCGAGGGCAAGCTCTAC
GTGTTCGGTGGATGTGGCGCCAAAGGCCGCATGCGCGATTTGTACGCATT
TGATATCGGAAAGGGCACGTGGGAGGCGTTGCCGTCGAAGGAGGAGATGA
AGGGACGTGGCGGCGCGGCAGTGACAGCAGTGGATGGGAAGGTTTTACTG
CTGGGGGGGTTTGCCGGGGAAGAGGCCAGAGACATGTGGGCTTTTGACTT
GGAGAAGAAGGAGTGGGAGGACTGGTCGTCGTACAGCACGGGCCTGGAGC
CTCGCAGTGTTTTTGGGCTGCAGCCGGTGCAAGGGGGAAAAAGCCTCGTC
CTCTTCGGTGGGGAGGTTGACCCGTCATCCGCTGGGCATATGGGCGCGGG
CGGCTTCGCGGGGGACACGCTCCTCTTCTCGCTCACGGACAAGACGCAAG
GATTCACGTCGCCCCTACCTTCCTCCCCTCCCTCCCCCAGTCCCTCCCCT
CGGGGTTGGTACGGGCATTGCGTGACAAAGGAGGGGAGTGTCGTGGTAGT
GGGCGGATTGGCGCCCGACAACTCGCGGCTGGGCGATGTATGGGTGCTGG
AGGAGGAGGGAAAGGAGGGAGGAGGGAAAGAGGAGCTATAG
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Synonyms
Publications