NO07G00120.1, NO07G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00120.1
Unique NameNO07G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1268
Alignment locationchr7:43899..45463 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:43899..45463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00120.1 vs.
Match: EWM27395.1 (hypothetical protein Naga_100185g6 [Nannochloropsis gaditana])

HSP 1 Score: 211.1 bits (536), Expect = 4.900e-51
Identity = 135/280 (48.21%), Postives = 174/280 (62.14%), Query Frame = 0 
Query:   17 LPLHYSLPLSSSPVM---KHASIPSLDALAVLGLLALAGLLSNELLERLSHSPLADSTLPYPSTAHLYPYFSILAPITEIPGSSVTLYVLPNWASIGVMVPGLDALTVHALTDLSPAAAMTGERLLKLLQVSRDLAWVLPFLVLCAVMGFEARRRTKKLLGN--SKD-SLILVSSVTAALRVILGAAICLLGILLPFLALHRLPRSLAEDLTLNPTDHPLLKGLSPQEVVYRFVHWEDPDFIDDPGAVTIVRAESSVVPVAALGLVWVGLGLRLLLPLLL 291
            LP HY L L SS ++   KH +  SL  LA  GLL LAG LS+ELL R +     D+T+  P TA ++P+FSIL P+T  PG+S T YVL +  ++GVMVPGLD LT+  L D+ P+A   G+ +  L ++S  LA++L  L  C ++  E R    K + +  S D S +   S   ALRV LGA+ CLLGI +PFL L+  P  LA DL  NP   PLLK L  +  VYRFVHWE    IDDP  VTI+RAE+SVV V AL L WVGLG +++LP+ L
Sbjct:   10 LPAHY-LCLPSSCIIATKKHTANLSLHILAYFGLLTLAGYLSSELLGRETQKLPGDATVSQPQTAQMHPFFSILVPMTLFPGTSTTFYVLQSLKTVGVMVPGLDLLTIRPLGDICPSAYAIGKWITFLFRISEKLAYLLILLSACGILAIELRILLGKQMTDLTSPDISRLWWPSEFTALRVFLGASSCLLGISIPFLVLYHFPFQLAHDLEQNPNSDPLLKTLFAEHTVYRFVHWEGAG-IDDPSLVTILRAETSVVLVVALSLCWVGLGSKIMLPIPL 287
The following BLAST results are available for this feature:
BLAST of NO07G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27395.14.900e-5148.21hypothetical protein Naga_100185g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00120NO07G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00120.1NO07G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00120.1.cds1NO07G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00120.1.cds2NO07G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00120.1.cds3NO07G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00120.1 ID=NO07G00120.1|Name=NO07G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1268bp
AACTACAGGTCCATTCGCGCATGCCGAGCAACTACCGCAAGAGCAATATC
ACTCTTGACAAGCCATGAGACAAGCCATGGTGGCGTTAGCCATCACTGAG
GATAAAGATGACTTGCCTTTGCATTACAGCCTACCATTGTCGTCATCTCC
AGTTATGAAACACGCCTCGATCCCGTCCCTCGATGCTTTGGCAGTGCTAG
GGCTCCTCGCTCTTGCCGGTCTACTTTCGAACGAGCTGCTGGAGAGGCTT
TCTCATAGCCCCTTGGCCGACAGCACCCTCCCGTATCCCTCCACAGCCCA
CTTATATCCCTATTTTTCAATTCTGGCACCCATTACGGAAATACCGGGCT
CTTCTGTCACTTTATACGTGCTGCCAAATTGGGCATCAATAGGAGTCATG
GTGCCGGGCTTGGATGCGCTGACCGTACATGCCCTCACCGACCTTTCTCC
CGCTGCTGCGATGACGGGCGAGAGGCTGTTAAAACTTCTGCAAGTCTCCA
GAGATCTTGCGTGGGTACTTCCTTTTCTTGTACTTTGTGCCGTTATGGGA
TTTGAGGCGCGAAGGAGGACGAAGAAGTTGCTGGGCAATAGCAAGGACAG
CCTCATTTTGGTGTCCTCCGTGACAGCAGCGCTCCGTGTTATATTGGGAG
CAGCCATCTGCCTGCTCGGCATCCTCCTCCCCTTCCTCGCCCTGCACCGG
CTCCCCAGGAGCCTTGCAGAGGACCTGACGCTGAACCCCACGGACCATCC
CCTGCTTAAAGGTTTATCGCCTCAGGAAGTGGTCTACCGATTCGTCCACT
GGGAGGACCCCGACTTCATCGACGACCCGGGCGCTGTCACGATCGTCCGC
GCCGAGTCCTCCGTGGTGCCCGTCGCAGCGCTAGGACTCGTCTGGGTCGG
ACTTGGCCTCAGACTACTGCTACCGCTACTGCTGCCGCTGTGCCAGTCAA
CCCCGTGGGGAAAGAGACAGCGCTAGATAGCTCATGATGAAGGCATTGAT
GACACGATGATGACACTACTGCATTGAACACGATGAAATTTGAGAAGGGA
AAGAAGACTCCCCACGTATCTTGCATTTTAGGCGGCTTTGGGTCAATGTT
TTCTTTATTCACAATTAGAGGAGGGCTCTGCTTTCTTCCAACCGACATGC
TGCCCAAGTGTCCTCACACACTCTATCTTTAAACCTTCATGTTCTTCCTC
CGGGTCTGTCTACTCCTTTATCAGTCGCCTTCTTCCCTCCCGCACTTGAT
CTTACCCTACCCGCCCAC
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protein sequence of NO07G00120.1

>NO07G00120.1-protein ID=NO07G00120.1-protein|Name=NO07G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MRQAMVALAITEDKDDLPLHYSLPLSSSPVMKHASIPSLDALAVLGLLAL
AGLLSNELLERLSHSPLADSTLPYPSTAHLYPYFSILAPITEIPGSSVTL
YVLPNWASIGVMVPGLDALTVHALTDLSPAAAMTGERLLKLLQVSRDLAW
VLPFLVLCAVMGFEARRRTKKLLGNSKDSLILVSSVTAALRVILGAAICL
LGILLPFLALHRLPRSLAEDLTLNPTDHPLLKGLSPQEVVYRFVHWEDPD
FIDDPGAVTIVRAESSVVPVAALGLVWVGLGLRLLLPLLLPLCQSTPWGK
RQR*
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mRNA from alignment at chr7:43899..45463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00120.1 ID=NO07G00120.1|Name=NO07G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1565bp|location=Sequence derived from alignment at chr7:43899..45463- (Nannochloropsis oceanica)
AACTACAGGTCCATTCGCGCATGCCGAGCAACTACCGCAAGAGCAATATC
ACTCTTGACAAGCCATGAGACAAGCCATGGTGGCGTTAGCCATCACTGAG
GATAAAGATGACTTGCCTTTGCATTACAGCCTACCATTGTCGTCATCTCC
AGTTATGAAACACGCCTCGATCCCGTCCCTCGATGCTTTGGCAGTGCTAG
GGCTCCTCGCTCTTGCCGGTCTACTTTCGAACGAGCTGCTGGAGAGGCTT
TCTCATAGCCCCTTGGCCGACAGCACCCTCCCGTATCCCTCCACAGCCCA
CTTATATCCCTATTTTTCAATTCTGGCACCCATTACGGAAATACCGGGCT
CTTCTGTCACTTTATACGTGCTGCCAAATTGGGCATCAATAGGAGTCATG
GTGCCGGGCTTGGATGCGCTGACCGTACATGCCCTCACCGACCTTTCTCC
CGCTGCTGCGATGACGGGCGAGAGGCTGTTAAAACTTCTGCAAGTCTCCA
GAGATCTTGCGTGGGTACTTCCTTTTCTTGTACTTTGTGCCGTTATGGGA
TTTGAGGCGCGAAGGAGGACGAAGAAGTTGCTGGGCAATAGCAAGGACAG
CCTCATTTTGGTGTCCTCCGTGACAGCAGCGCTCCGTGTTATATTGGGAG
CAGCCATCTGCCTGCTCGGGTAAGTCCTCGTGCGTTTTTCCGCACCCTTC
CTTTTCCTCACTTACATGCTGATTATCAAGCTTCTATTTTTCCTGCCCGA
CAGCATCCTCCTCCCCTTCCTCGCCCTGCACCGGCTCCCCAGGAGCCTTG
CAGAGGACCTGACGCTGAACCCCACGGACCATCCCCTGCTTAAAGGTTTA
TCGCCTCAGGAAGTGGTCTACCGATTCGTCCACTGGGAGGACCCCGACTT
CATCGACGACCCGGGCGCTGTCACGATCGTCCGGTAGGGAAGGAGAAGAG
AGGGGGGATGGGAGAAGGGAGGGAAGGAGAAGTGGGGAGCGCGCGAGGGA
GGGAAGGAAAAAGGGAGGAAGCTAGACTCGATATCGGAACTGAGCACGCA
TATATGATTTCAAAATGTTTTTTGCACTTCCCATATTGCCTCTTCTCATC
CTCCCTTCCCACCGACATACACAAACACGACAACCACGACAACAAGCGCC
GAGTCCTCCGTGGTGCCCGTCGCAGCGCTAGGACTCGTCTGGGTCGGACT
TGGCCTCAGACTACTGCTACCGCTACTGCTGCCGCTGTGCCAGTCAACCC
CGTGGGGAAAGAGACAGCGCTAGATAGCTCATGATGAAGGCATTGATGAC
ACGATGATGACACTACTGCATTGAACACGATGAAATTTGAGAAGGGAAAG
AAGACTCCCCACGTATCTTGCATTTTAGGCGGCTTTGGGTCAATGTTTTC
TTTATTCACAATTAGAGGAGGGCTCTGCTTTCTTCCAACCGACATGCTGC
CCAAGTGTCCTCACACACTCTATCTTTAAACCTTCATGTTCTTCCTCCGG
GTCTGTCTACTCCTTTATCAGTCGCCTTCTTCCCTCCCGCACTTGATCTT
ACCCTACCCGCCCAC
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Coding sequence (CDS) from alignment at chr7:43899..45463-

>NO07G00120.1 ID=NO07G00120.1|Name=NO07G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr7:43899..45463- (Nannochloropsis oceanica)
ATGAGACAAGCCATGGTGGCGTTAGCCATCACTGAGGATAAAGATGACTT
GCCTTTGCATTACAGCCTACCATTGTCGTCATCTCCAGTTATGAAACACG
CCTCGATCCCGTCCCTCGATGCTTTGGCAGTGCTAGGGCTCCTCGCTCTT
GCCGGTCTACTTTCGAACGAGCTGCTGGAGAGGCTTTCTCATAGCCCCTT
GGCCGACAGCACCCTCCCGTATCCCTCCACAGCCCACTTATATCCCTATT
TTTCAATTCTGGCACCCATTACGGAAATACCGGGCTCTTCTGTCACTTTA
TACGTGCTGCCAAATTGGGCATCAATAGGAGTCATGGTGCCGGGCTTGGA
TGCGCTGACCGTACATGCCCTCACCGACCTTTCTCCCGCTGCTGCGATGA
CGGGCGAGAGGCTGTTAAAACTTCTGCAAGTCTCCAGAGATCTTGCGTGG
GTACTTCCTTTTCTTGTACTTTGTGCCGTTATGGGATTTGAGGCGCGAAG
GAGGACGAAGAAGTTGCTGGGCAATAGCAAGGACAGCCTCATTTTGGTGT
CCTCCGTGACAGCAGCGCTCCGTGTTATATTGGGAGCAGCCATCTGCCTG
CTCGGCATCCTCCTCCCCTTCCTCGCCCTGCACCGGCTCCCCAGGAGCCT
TGCAGAGGACCTGACGCTGAACCCCACGGACCATCCCCTGCTTAAAGGTT
TATCGCCTCAGGAAGTGGTCTACCGATTCGTCCACTGGGAGGACCCCGAC
TTCATCGACGACCCGGGCGCTGTCACGATCGTCCGCGCCGAGTCCTCCGT
GGTGCCCGTCGCAGCGCTAGGACTCGTCTGGGTCGGACTTGGCCTCAGAC
TACTGCTACCGCTACTGCTGCCGCTGTGCCAGTCAACCCCGTGGGGAAAG
AGACAGCGCTAG
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Synonyms
Publications