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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:36810..39564 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00100.1 vs.
Match: EWM27394.1 (hypothetical protein Naga_100185g4 [Nannochloropsis gaditana]) HSP 1 Score: 550.8 bits (1418), Expect = 5.300e-153 Identity = 322/612 (52.61%), Postives = 404/612 (66.01%), Query Frame = 0
Query: 18 IVLRFSLFLFLLSAYVLGLFSRSLPVPPDGIG---DANTRPQYITLRHGG-GRTAPSLPNDSL------IAGSSAAAWAAGGEDVNRNSAITTDETKEEEGIKEEAAAEKQDVLQGEEETEKWWAREQKQEEDGDEDKEGAVEEVQRDAGGDDDMHVRKDESRRTVDHSSLAFPSSSSSSSSSSSSSLTSWPPPSWAWPLSSEHQAYGDAAFGIRFPPTPPSFPPSFPPSNTTCTGTG-LDETEDIDFTLVSQSSPDRLWMLPHICQRWQGPIVLAIYMLNSTSADHTFLSEITACPHARILQVSPPPSSLSASSAPRSSS--SAYWGSPDHYPVNALRNLAIAEVTTTHFLLTDMDLWPSLHLYSLLKHLSSK---NGKGGREGGMERGGGGETRERFLDPLQALVVPAFGYLGKATTAEQARGEKGGKGEAGREERVEGMPEEQQGLLTCLERGECLVFDSQYNVHGHGSTDTVYWTSRQGEDEIKDIPCFLSNRYEPYVVLRRCPTTPPFAEAFTGYGKNKIEHIAHLRYRGFTFSVLPPQAFLVHFPHPTSRSKKSWLTGGREEGKAGWRERMDEMYSRFLGWASQEKASRARKITHLCPPSNPTAVK 614
++LR +FLF LSAY+LG +LP+ P +G A+ RP+Y LRHG G A SL N ++ + AA+ D N A+ + + EAA + + L E++ + Q Q+E+G+ +EE++ +A +D + +D R SL+ SSSS+S+ +S+S + WPPPSWAWPL +H+AYG F IR FPPS SN TCTG G LD ED+DFTLVSQSSPDR+WMLPHIC+RW+GPI++AI+M T+ F++ + CP + L V P S P SSS ++ W +P+ YPVNALRNLAI+EV TTHFLLTDMDLWPS LY LLKHLSSK + KG TRE FLDPLQALVVPAF YLG+ T GG+ + RE++V GMP++Q+GL+ CL +G CLVFD+QYNVHGHG+TDT YW RQ +EIK IPCFLSNRYEPYVVLRRCPTTPPFAEAFTGYGKNKI+HIAHLR+RGFTFSVLPP+AFLVH+PHP SRSK+SWL GG++E GWR RMD++YSRFL WA E+A+RA ITHLC P TA+K
Sbjct: 24 LILRSIVFLFFLSAYLLGNLWMTLPMVPREMGRETSADARPRYSVLRHGNHGSAAWSLRNRNMEETSAHVQSFEAASSDLKAPDGTENEALGRYIERSGNVVGIEAADTEMNALLAREKSGV--IKIQDQDEEGEN-----LEELEENAV-EDFGPIEEDGER------SLSSSSSSSTSAPTSTSPSSIWPPPSWAWPLDPDHEAYGRDMFKIR-------FPPSAAASNATCTGAGSLD--EDLDFTLVSQSSPDRIWMLPHICERWEGPIIVAIFMHGFTAEHDAFMANL-KCPQLQCLPVHP--------SVPASSSIPASVWAAPNLYPVNALRNLAISEVRTTHFLLTDMDLWPSRRLYPLLKHLSSKREIDSKG-------------TRETFLDPLQALVVPAFSYLGQVT---------GGEKQEAREDKVGGMPDDQRGLVECLWKGNCLVFDAQYNVHGHGTTDTAYWVGRQENEEIKPIPCFLSNRYEPYVVLRRCPTTPPFAEAFTGYGKNKIQHIAHLRFRGFTFSVLPPEAFLVHYPHPKSRSKQSWLEGGKQEASRGWRGRMDDLYSRFLDWAFNERAARAGSITHLCQPPESTALK 581
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00100.1 ID=NO07G00100.1|Name=NO07G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp AGACGCATGACCACTCCTCTGCAATAGGTGCTACCAGCAGCTTAGGATAC GCTCTGAAATTGATTTTTTGCATCAAGTGATGGCAAGGTATTTGCCCCGA CGAGGGTGTGTATGGCTTTTGGGCTTCCAACCTCCCACACCCACCATACC GAAGTGCCGTTCGGCCCACATATGGGCTTCTCGTGTTATGGGATGCCTTG CACGTGACTCACGTACATCCAGCTCTTTTCACTAGCAGGACTCCAGCAGC ATCTCTCATTCCATCTTTCTCTCGTTGAGCTTACCCTTGCCCCCTAGACC CTGTTACTAATCTTTCAATGTCCCAGGCACAAATTTGAAAGTAATTTGTA AGCCACCTCCTCATCACCCTCTCTACGGGTCCTGCATACACACAGAAACA GCAACAAGCAGCGGCAGATAACCTTGACAACATGAAATAGTCGATAGTAC ATTACAAACAAACAAAGATCATGCACTCTTCCTCGACGCACCTTCCGCCC CGCGGCACCCCCGGCAGCTTCATTGTCCTCCGTTTCTCCCTCTTCCTCTT CCTCCTGTCTGCCTACGTGCTGGGGCTCTTCTCGCGATCTCTCCCCGTCC CTCCTGACGGAATTGGTGATGCCAATACGCGCCCACAATACATCACGCTG CGACACGGCGGCGGCCGTACTGCTCCTTCCTTACCTAACGATTCTCTCAT TGCAGGCAGCAGCGCAGCGGCCTGGGCTGCAGGAGGTGAGGACGTGAACA GAAACAGCGCAATCACCACTGATGAAACGAAAGAGGAAGAGGGAATAAAG GAGGAAGCAGCGGCAGAAAAGCAAGATGTGCTGCAGGGGGAGGAGGAGAC GGAGAAATGGTGGGCCCGGGAGCAGAAGCAAGAAGAGGATGGGGACGAGG ATAAGGAGGGAGCCGTAGAAGAGGTGCAGCGAGACGCAGGTGGAGACGAT GACATGCACGTTCGAAAGGATGAAAGCCGAAGAACAGTTGACCACTCTTC TCTTGCATTTCCCTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCT CCCTTACCTCTTGGCCACCTCCCTCCTGGGCATGGCCCCTCAGCTCTGAG CACCAGGCGTACGGCGACGCGGCTTTCGGCATCAGATTCCCGCCGACGCC CCCCTCCTTCCCTCCCTCCTTCCCGCCCTCAAACACCACCTGCACGGGCA CCGGTCTGGACGAGACCGAAGACATCGATTTCACCCTCGTGTCCCAATCC TCCCCCGACCGTCTTTGGATGCTCCCTCACATCTGCCAGCGCTGGCAAGG ACCCATAGTCCTGGCCATCTACATGCTGAACTCCACCTCCGCCGACCATA CCTTCCTCTCCGAGATCACTGCCTGTCCGCACGCGCGCATCTTGCAGGTC TCGCCGCCCCCCTCCTCTCTCTCCGCCTCCTCCGCCCCCCGCTCCTCCTC TTCGGCCTACTGGGGCTCGCCGGATCACTATCCCGTCAATGCCCTGCGAA ATCTGGCGATCGCGGAGGTTACGACCACGCACTTCCTTCTGACGGACATG GACCTCTGGCCCTCCCTCCACCTCTACTCCCTCCTCAAGCACCTGTCGTC GAAGAACGGCAAGGGAGGGAGGGAGGGAGGGATGGAGAGAGGGGGAGGAG GCGAGACCAGGGAGCGATTCCTGGATCCGCTGCAGGCGTTGGTGGTGCCC GCGTTTGGCTACCTGGGAAAGGCGACGACGGCAGAGCAAGCACGGGGGGA GAAGGGGGGAAAGGGCGAGGCAGGGAGGGAGGAGCGGGTGGAGGGCATGC CGGAGGAGCAGCAGGGGCTGCTGACGTGCTTGGAGAGAGGGGAATGCCTC GTCTTTGACTCGCAGTACAATGTGCACGGGCACGGGAGCACAGACACAGT GTACTGGACAAGCAGGCAGGGCGAGGACGAGATCAAGGATATTCCTTGTT TCTTGTCGAACAGATACGAGCCTTACGTGGTCCTTCGCCGCTGCCCCACC ACCCCTCCCTTCGCCGAGGCCTTCACAGGCTATGGCAAGAACAAAATTGA GCACATTGCTCACCTCCGTTACCGAGGATTCACTTTCTCAGTCCTCCCCC CCCAGGCCTTCCTGGTACATTTCCCCCATCCAACGAGTAGGAGCAAGAAG TCCTGGTTGACAGGAGGGCGGGAGGAAGGGAAGGCGGGATGGAGGGAGCG GATGGACGAGATGTACAGCCGGTTTTTGGGTTGGGCGTCCCAGGAGAAGG CATCCAGAGCGCGTAAAATCACCCATTTGTGCCCTCCCTCCAACCCAACG GCTGTGAAGCCATAGAGATAGATGGATAGGAAGGAGGAGAGAGGGAGGGA GGGACATATTTAGAAATTGGATCCAGGTATAACAGCGTAAGCCCTCGAAT GTTGTCGTTTAGAAGTGAAAGGGAAGAGAGGAGATAAAACTAAATATTTA ATACGGAAGGAGAATAAGACCGATTCAATATATCAAAGGATTAATAAATC AATCACTCAAAAGTCAAAAACTAAATATACAAGAAAAAGAATCAAAAAAT CTACCGATTAATCAAACAAAG back to topprotein sequence of NO07G00100.1 >NO07G00100.1-protein ID=NO07G00100.1-protein|Name=NO07G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp MHSSSTHLPPRGTPGSFIVLRFSLFLFLLSAYVLGLFSRSLPVPPDGIGD ANTRPQYITLRHGGGRTAPSLPNDSLIAGSSAAAWAAGGEDVNRNSAITT DETKEEEGIKEEAAAEKQDVLQGEEETEKWWAREQKQEEDGDEDKEGAVE EVQRDAGGDDDMHVRKDESRRTVDHSSLAFPSSSSSSSSSSSSSLTSWPP PSWAWPLSSEHQAYGDAAFGIRFPPTPPSFPPSFPPSNTTCTGTGLDETE DIDFTLVSQSSPDRLWMLPHICQRWQGPIVLAIYMLNSTSADHTFLSEIT ACPHARILQVSPPPSSLSASSAPRSSSSAYWGSPDHYPVNALRNLAIAEV TTTHFLLTDMDLWPSLHLYSLLKHLSSKNGKGGREGGMERGGGGETRERF LDPLQALVVPAFGYLGKATTAEQARGEKGGKGEAGREERVEGMPEEQQGL LTCLERGECLVFDSQYNVHGHGSTDTVYWTSRQGEDEIKDIPCFLSNRYE PYVVLRRCPTTPPFAEAFTGYGKNKIEHIAHLRYRGFTFSVLPPQAFLVH FPHPTSRSKKSWLTGGREEGKAGWRERMDEMYSRFLGWASQEKASRARKI THLCPPSNPTAVKP* back to topmRNA from alignment at chr7:36810..39564+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00100.1 ID=NO07G00100.1|Name=NO07G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2755bp|location=Sequence derived from alignment at chr7:36810..39564+ (Nannochloropsis oceanica) AGACGCATGACCACTCCTCTGCAATAGGTGCTACCAGCAGCTTAGGATAC
GCTCTGAAATTGATTTTTTGCATCAAGTGATGGCAAGGTATTTGCCCCGA
CGAGGGTGTGTATGGCTTTTGGGCTTCCAACCTCCCACACCCACCATACC
GAAGTGCCGTTCGGCCCACATATGGGCTTCTCGTGTTATGGGATGCCTTG
CACGTGACTCACGTACATCCAGCTCTTTTCACTAGCAGGACTCCAGCAGC
ATCTCTCATTCCATCTTTCTCTCGTTGAGCTTACCCTTGCCCCCTAGACC
CTGTTACTAATCTTTCAATGTCCCAGGCACAAATTTGAAAGTAATTTGTA
AGCCACCTCCTCATCACCCTCTCTACGGGTCCTGCATACACACAGAAACA
GCAACAAGCAGCGGCAGATAACCTTGACAACATGAAATAGTCGATAGTAC
ATTACAAACAAACAAAGATCATGCACTCTTCCTCGACGCACCTTCCGCCC
CGCGGCACCCCCGGCAGCTTCATTGTCCTCCGTTTCTCCCTCTTCCTCTT
CCTCCTGTCTGCCTACGTGCTGGGGCTCTTCTCGCGATCTCTCCCCGTCC
CTCCTGACGGAATTGGTGATGCCAATACGCGCCCACAATACATCACGCTG
CGACACGGCGGCGGCCGTACTGCTCCTTCCTTACCTAACGATTCTCTCAT
TGCAGGCAGCAGCGCAGCGGCCTGGGCTGCAGGAGGTGAGGACGTGAACA
GAAACAGCGCAATCACCACTGATGAAACGAAAGAGGAAGAGGGAATAAAG
GAGGAAGCAGCGGCAGAAAAGCAAGATGTGCTGCAGGGGGAGGAGGAGAC
GGAGAAATGGTGGGCCCGGGAGCAGAAGCAAGAAGAGGATGGGGACGAGG
ATAAGGAGGGAGCCGTAGAAGAGGTGCAGCGAGACGCAGGTGGAGACGAT
GACATGCACGTTCGAAAGGATGAAAGCCGAAGAACAGTTGACCACTCTTC
TCTTGCATTTCCCTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCCTTACCTCTTGGCCACCTCCCTCCTGGGCATGGCCCCTCAGCTCTGAG
CACCAGGCGTACGGCGACGCGGCTTTCGGCATCAGATTCCCGCCGACGCC
CCCCTCCTTCCCTCCCTCCTTCCCGCCCTCAAACACCACCTGCACGGGCA
CCGGTCTGGACGAGACCGAAGACATCGATTTCACCCTCGTGTCCCAATCC
TCCCCCGACCGTCTTTGGATGCTCCCTCACATCTGCCAGCGCTGGCAAGG
ACCCATAGTCCTGGCCATCTACATGCTGAACTCCACCTCCGCCGACCATA
CCTTCCTCTCCGAGATCACTGCCTGTCCGCACGCGCGCATCTTGCAGGTC
TCGCCGCCCCCCTCCTCTCTCTCCGCCTCCTCCGCCCCCCGCTCCTCCTC
TTCGGCCTACTGGGGCTCGCCGGATCACTATCCCGTCAATGCCCTGCGAA
ATCTGGCGATCGCGGAGGTTACGACCACGCACTTCCTTCTGACGGACATG
GACCTCTGGCCCTCCCTCCACCTCTACTCCCTCCTCAAGCACCTGTCGTC
GAAGAACGGCAAGGGAGGGAGGGAGGGAGGGATGGAGAGAGGGGGAGGAG
GCGAGACCAGGGAGCGATTCCTGGATCCGCTGCAGGCGTTGGTGGTGCCC
GCGTTTGGCTACCTGGGAAAGGCGACGACGGCAGAGCAAGCACGGGGGGA
GAAGGGGGGAAAGGGCGAGGCAGGGAGGGAGGAGCGGGTGGAGGGCATGC
CGGAGGAGCAGCAGGGGCTGCTGACGTGCTTGGAGAGAGGGGAATGCCTC
GTCTTTGACTCGCAGTACAATGTGCACGGGCACGGGAGCACAGACACAGT
GTACTGGACAAGCAGGCAGGGCGAGGACGAGATCAAGGATATTCCTTGTT
TCTTGTCGAACAGGTGGGGGGACGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGTGTCAGGCACGGAGCTGATCCCTCCCCTGCATCAGACAAGCGTTT
CTCCACGGTTCTCGTGACCTCATTTCTCTCTTGCTCCCTACCTCCCTGCC
TCTTTCTCTTCCTCTTTATCTCCCTCTTTCCCTCCTCCGCCCCTCAGATA
CGAGCCTTACGTGGTCCTTCGCCGCTGCCCCACCACCCCTCCCTTCGCCG
AGGCCTTCACAGGCTATGGCAAGAACAAAATTGAGCACATTGCTCACCTC
CGTTACCGAGGATTCACTTTCTCAGTCCTCCCCCCCCAGGCCTTCCTGGT
ACATTTCCCCCATCCAACGAGTAGGAGCAAGAAGTCCTGGTTGACAGGAG
GGCGGGAGGAAGGGAAGGCGGGATGGAGGGAGCGGATGGACGAGATGTAC
AGCCGGTTTTTGGGTTGGGCGTCCCAGGAGAAGGCATCCAGAGCGCGTAA
AATCACCCATTTGTGCCCTCCCTCCAACCCAACGGCTGTGAAGCCATAGA
GATAGATGGATAGGAAGGAGGAGAGAGGGAGGGAGGGACATATTTAGAAA
TTGGATCCAGGTATAACAGCGTAAGCCCTCGAATGTTGTCGTTTAGAAGT
GAAAGGGAAGAGAGGAGATAAAACTAAATATTTAATACGGAAGGAGAATA
AGACCGATTCAATATATCAAAGGATTAATAAATCAATCACTCAAAAGTCA
AAAACTAAATATACAAGAAAAAGAATCAAAAAATCTACCGATTAATCAAA
CAAAG back to topCoding sequence (CDS) from alignment at chr7:36810..39564+ >NO07G00100.1 ID=NO07G00100.1|Name=NO07G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at chr7:36810..39564+ (Nannochloropsis oceanica) ATGCACTCTTCCTCGACGCACCTTCCGCCCCGCGGCACCCCCGGCAGCTT CATTGTCCTCCGTTTCTCCCTCTTCCTCTTCCTCCTGTCTGCCTACGTGC TGGGGCTCTTCTCGCGATCTCTCCCCGTCCCTCCTGACGGAATTGGTGAT GCCAATACGCGCCCACAATACATCACGCTGCGACACGGCGGCGGCCGTAC TGCTCCTTCCTTACCTAACGATTCTCTCATTGCAGGCAGCAGCGCAGCGG CCTGGGCTGCAGGAGGTGAGGACGTGAACAGAAACAGCGCAATCACCACT GATGAAACGAAAGAGGAAGAGGGAATAAAGGAGGAAGCAGCGGCAGAAAA GCAAGATGTGCTGCAGGGGGAGGAGGAGACGGAGAAATGGTGGGCCCGGG AGCAGAAGCAAGAAGAGGATGGGGACGAGGATAAGGAGGGAGCCGTAGAA GAGGTGCAGCGAGACGCAGGTGGAGACGATGACATGCACGTTCGAAAGGA TGAAAGCCGAAGAACAGTTGACCACTCTTCTCTTGCATTTCCCTCTTCTT CTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTACCTCTTGGCCACCT CCCTCCTGGGCATGGCCCCTCAGCTCTGAGCACCAGGCGTACGGCGACGC GGCTTTCGGCATCAGATTCCCGCCGACGCCCCCCTCCTTCCCTCCCTCCT TCCCGCCCTCAAACACCACCTGCACGGGCACCGGTCTGGACGAGACCGAA GACATCGATTTCACCCTCGTGTCCCAATCCTCCCCCGACCGTCTTTGGAT GCTCCCTCACATCTGCCAGCGCTGGCAAGGACCCATAGTCCTGGCCATCT ACATGCTGAACTCCACCTCCGCCGACCATACCTTCCTCTCCGAGATCACT GCCTGTCCGCACGCGCGCATCTTGCAGGTCTCGCCGCCCCCCTCCTCTCT CTCCGCCTCCTCCGCCCCCCGCTCCTCCTCTTCGGCCTACTGGGGCTCGC CGGATCACTATCCCGTCAATGCCCTGCGAAATCTGGCGATCGCGGAGGTT ACGACCACGCACTTCCTTCTGACGGACATGGACCTCTGGCCCTCCCTCCA CCTCTACTCCCTCCTCAAGCACCTGTCGTCGAAGAACGGCAAGGGAGGGA GGGAGGGAGGGATGGAGAGAGGGGGAGGAGGCGAGACCAGGGAGCGATTC CTGGATCCGCTGCAGGCGTTGGTGGTGCCCGCGTTTGGCTACCTGGGAAA GGCGACGACGGCAGAGCAAGCACGGGGGGAGAAGGGGGGAAAGGGCGAGG CAGGGAGGGAGGAGCGGGTGGAGGGCATGCCGGAGGAGCAGCAGGGGCTG CTGACGTGCTTGGAGAGAGGGGAATGCCTCGTCTTTGACTCGCAGTACAA TGTGCACGGGCACGGGAGCACAGACACAGTGTACTGGACAAGCAGGCAGG GCGAGGACGAGATCAAGGATATTCCTTGTTTCTTGTCGAACAGATACGAG CCTTACGTGGTCCTTCGCCGCTGCCCCACCACCCCTCCCTTCGCCGAGGC CTTCACAGGCTATGGCAAGAACAAAATTGAGCACATTGCTCACCTCCGTT ACCGAGGATTCACTTTCTCAGTCCTCCCCCCCCAGGCCTTCCTGGTACAT TTCCCCCATCCAACGAGTAGGAGCAAGAAGTCCTGGTTGACAGGAGGGCG GGAGGAAGGGAAGGCGGGATGGAGGGAGCGGATGGACGAGATGTACAGCC GGTTTTTGGGTTGGGCGTCCCAGGAGAAGGCATCCAGAGCGCGTAAAATC ACCCATTTGTGCCCTCCCTCCAACCCAACGGCTGTGAAGCCATAG back to top
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