NO07G00100.1, NO07G00100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00100.1
Unique NameNO07G00100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2571
Alignment locationchr7:36810..39564 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:36810..39564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00100.1 vs.
Match: EWM27394.1 (hypothetical protein Naga_100185g4 [Nannochloropsis gaditana])

HSP 1 Score: 550.8 bits (1418), Expect = 5.300e-153
Identity = 322/612 (52.61%), Postives = 404/612 (66.01%), Query Frame = 0
Query:   18 IVLRFSLFLFLLSAYVLGLFSRSLPVPPDGIG---DANTRPQYITLRHGG-GRTAPSLPNDSL------IAGSSAAAWAAGGEDVNRNSAITTDETKEEEGIKEEAAAEKQDVLQGEEETEKWWAREQKQEEDGDEDKEGAVEEVQRDAGGDDDMHVRKDESRRTVDHSSLAFPSSSSSSSSSSSSSLTSWPPPSWAWPLSSEHQAYGDAAFGIRFPPTPPSFPPSFPPSNTTCTGTG-LDETEDIDFTLVSQSSPDRLWMLPHICQRWQGPIVLAIYMLNSTSADHTFLSEITACPHARILQVSPPPSSLSASSAPRSSS--SAYWGSPDHYPVNALRNLAIAEVTTTHFLLTDMDLWPSLHLYSLLKHLSSK---NGKGGREGGMERGGGGETRERFLDPLQALVVPAFGYLGKATTAEQARGEKGGKGEAGREERVEGMPEEQQGLLTCLERGECLVFDSQYNVHGHGSTDTVYWTSRQGEDEIKDIPCFLSNRYEPYVVLRRCPTTPPFAEAFTGYGKNKIEHIAHLRYRGFTFSVLPPQAFLVHFPHPTSRSKKSWLTGGREEGKAGWRERMDEMYSRFLGWASQEKASRARKITHLCPPSNPTAVK 614
            ++LR  +FLF LSAY+LG    +LP+ P  +G    A+ RP+Y  LRHG  G  A SL N ++      +    AA+      D   N A+     +    +  EAA  + + L   E++     + Q Q+E+G+      +EE++ +A  +D   + +D  R      SL+  SSSS+S+ +S+S  + WPPPSWAWPL  +H+AYG   F IR       FPPS   SN TCTG G LD  ED+DFTLVSQSSPDR+WMLPHIC+RW+GPI++AI+M   T+    F++ +  CP  + L V P        S P SSS  ++ W +P+ YPVNALRNLAI+EV TTHFLLTDMDLWPS  LY LLKHLSSK   + KG             TRE FLDPLQALVVPAF YLG+ T         GG+ +  RE++V GMP++Q+GL+ CL +G CLVFD+QYNVHGHG+TDT YW  RQ  +EIK IPCFLSNRYEPYVVLRRCPTTPPFAEAFTGYGKNKI+HIAHLR+RGFTFSVLPP+AFLVH+PHP SRSK+SWL GG++E   GWR RMD++YSRFL WA  E+A+RA  ITHLC P   TA+K
Sbjct:   24 LILRSIVFLFFLSAYLLGNLWMTLPMVPREMGRETSADARPRYSVLRHGNHGSAAWSLRNRNMEETSAHVQSFEAASSDLKAPDGTENEALGRYIERSGNVVGIEAADTEMNALLAREKSGV--IKIQDQDEEGEN-----LEELEENAV-EDFGPIEEDGER------SLSSSSSSSTSAPTSTSPSSIWPPPSWAWPLDPDHEAYGRDMFKIR-------FPPSAAASNATCTGAGSLD--EDLDFTLVSQSSPDRIWMLPHICERWEGPIIVAIFMHGFTAEHDAFMANL-KCPQLQCLPVHP--------SVPASSSIPASVWAAPNLYPVNALRNLAISEVRTTHFLLTDMDLWPSRRLYPLLKHLSSKREIDSKG-------------TRETFLDPLQALVVPAFSYLGQVT---------GGEKQEAREDKVGGMPDDQRGLVECLWKGNCLVFDAQYNVHGHGTTDTAYWVGRQENEEIKPIPCFLSNRYEPYVVLRRCPTTPPFAEAFTGYGKNKIQHIAHLRFRGFTFSVLPPEAFLVHYPHPKSRSKQSWLEGGKQEASRGWRGRMDDLYSRFLDWAFNERAARAGSITHLCQPPESTALK 581          
The following BLAST results are available for this feature:
BLAST of NO07G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27394.15.300e-15352.61hypothetical protein Naga_100185g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00100NO07G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00100.1NO07G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00100.1.cds1NO07G00100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00100.1.cds2NO07G00100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00100.1 ID=NO07G00100.1|Name=NO07G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp
AGACGCATGACCACTCCTCTGCAATAGGTGCTACCAGCAGCTTAGGATAC
GCTCTGAAATTGATTTTTTGCATCAAGTGATGGCAAGGTATTTGCCCCGA
CGAGGGTGTGTATGGCTTTTGGGCTTCCAACCTCCCACACCCACCATACC
GAAGTGCCGTTCGGCCCACATATGGGCTTCTCGTGTTATGGGATGCCTTG
CACGTGACTCACGTACATCCAGCTCTTTTCACTAGCAGGACTCCAGCAGC
ATCTCTCATTCCATCTTTCTCTCGTTGAGCTTACCCTTGCCCCCTAGACC
CTGTTACTAATCTTTCAATGTCCCAGGCACAAATTTGAAAGTAATTTGTA
AGCCACCTCCTCATCACCCTCTCTACGGGTCCTGCATACACACAGAAACA
GCAACAAGCAGCGGCAGATAACCTTGACAACATGAAATAGTCGATAGTAC
ATTACAAACAAACAAAGATCATGCACTCTTCCTCGACGCACCTTCCGCCC
CGCGGCACCCCCGGCAGCTTCATTGTCCTCCGTTTCTCCCTCTTCCTCTT
CCTCCTGTCTGCCTACGTGCTGGGGCTCTTCTCGCGATCTCTCCCCGTCC
CTCCTGACGGAATTGGTGATGCCAATACGCGCCCACAATACATCACGCTG
CGACACGGCGGCGGCCGTACTGCTCCTTCCTTACCTAACGATTCTCTCAT
TGCAGGCAGCAGCGCAGCGGCCTGGGCTGCAGGAGGTGAGGACGTGAACA
GAAACAGCGCAATCACCACTGATGAAACGAAAGAGGAAGAGGGAATAAAG
GAGGAAGCAGCGGCAGAAAAGCAAGATGTGCTGCAGGGGGAGGAGGAGAC
GGAGAAATGGTGGGCCCGGGAGCAGAAGCAAGAAGAGGATGGGGACGAGG
ATAAGGAGGGAGCCGTAGAAGAGGTGCAGCGAGACGCAGGTGGAGACGAT
GACATGCACGTTCGAAAGGATGAAAGCCGAAGAACAGTTGACCACTCTTC
TCTTGCATTTCCCTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCCTTACCTCTTGGCCACCTCCCTCCTGGGCATGGCCCCTCAGCTCTGAG
CACCAGGCGTACGGCGACGCGGCTTTCGGCATCAGATTCCCGCCGACGCC
CCCCTCCTTCCCTCCCTCCTTCCCGCCCTCAAACACCACCTGCACGGGCA
CCGGTCTGGACGAGACCGAAGACATCGATTTCACCCTCGTGTCCCAATCC
TCCCCCGACCGTCTTTGGATGCTCCCTCACATCTGCCAGCGCTGGCAAGG
ACCCATAGTCCTGGCCATCTACATGCTGAACTCCACCTCCGCCGACCATA
CCTTCCTCTCCGAGATCACTGCCTGTCCGCACGCGCGCATCTTGCAGGTC
TCGCCGCCCCCCTCCTCTCTCTCCGCCTCCTCCGCCCCCCGCTCCTCCTC
TTCGGCCTACTGGGGCTCGCCGGATCACTATCCCGTCAATGCCCTGCGAA
ATCTGGCGATCGCGGAGGTTACGACCACGCACTTCCTTCTGACGGACATG
GACCTCTGGCCCTCCCTCCACCTCTACTCCCTCCTCAAGCACCTGTCGTC
GAAGAACGGCAAGGGAGGGAGGGAGGGAGGGATGGAGAGAGGGGGAGGAG
GCGAGACCAGGGAGCGATTCCTGGATCCGCTGCAGGCGTTGGTGGTGCCC
GCGTTTGGCTACCTGGGAAAGGCGACGACGGCAGAGCAAGCACGGGGGGA
GAAGGGGGGAAAGGGCGAGGCAGGGAGGGAGGAGCGGGTGGAGGGCATGC
CGGAGGAGCAGCAGGGGCTGCTGACGTGCTTGGAGAGAGGGGAATGCCTC
GTCTTTGACTCGCAGTACAATGTGCACGGGCACGGGAGCACAGACACAGT
GTACTGGACAAGCAGGCAGGGCGAGGACGAGATCAAGGATATTCCTTGTT
TCTTGTCGAACAGATACGAGCCTTACGTGGTCCTTCGCCGCTGCCCCACC
ACCCCTCCCTTCGCCGAGGCCTTCACAGGCTATGGCAAGAACAAAATTGA
GCACATTGCTCACCTCCGTTACCGAGGATTCACTTTCTCAGTCCTCCCCC
CCCAGGCCTTCCTGGTACATTTCCCCCATCCAACGAGTAGGAGCAAGAAG
TCCTGGTTGACAGGAGGGCGGGAGGAAGGGAAGGCGGGATGGAGGGAGCG
GATGGACGAGATGTACAGCCGGTTTTTGGGTTGGGCGTCCCAGGAGAAGG
CATCCAGAGCGCGTAAAATCACCCATTTGTGCCCTCCCTCCAACCCAACG
GCTGTGAAGCCATAGAGATAGATGGATAGGAAGGAGGAGAGAGGGAGGGA
GGGACATATTTAGAAATTGGATCCAGGTATAACAGCGTAAGCCCTCGAAT
GTTGTCGTTTAGAAGTGAAAGGGAAGAGAGGAGATAAAACTAAATATTTA
ATACGGAAGGAGAATAAGACCGATTCAATATATCAAAGGATTAATAAATC
AATCACTCAAAAGTCAAAAACTAAATATACAAGAAAAAGAATCAAAAAAT
CTACCGATTAATCAAACAAAG
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protein sequence of NO07G00100.1

>NO07G00100.1-protein ID=NO07G00100.1-protein|Name=NO07G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MHSSSTHLPPRGTPGSFIVLRFSLFLFLLSAYVLGLFSRSLPVPPDGIGD
ANTRPQYITLRHGGGRTAPSLPNDSLIAGSSAAAWAAGGEDVNRNSAITT
DETKEEEGIKEEAAAEKQDVLQGEEETEKWWAREQKQEEDGDEDKEGAVE
EVQRDAGGDDDMHVRKDESRRTVDHSSLAFPSSSSSSSSSSSSSLTSWPP
PSWAWPLSSEHQAYGDAAFGIRFPPTPPSFPPSFPPSNTTCTGTGLDETE
DIDFTLVSQSSPDRLWMLPHICQRWQGPIVLAIYMLNSTSADHTFLSEIT
ACPHARILQVSPPPSSLSASSAPRSSSSAYWGSPDHYPVNALRNLAIAEV
TTTHFLLTDMDLWPSLHLYSLLKHLSSKNGKGGREGGMERGGGGETRERF
LDPLQALVVPAFGYLGKATTAEQARGEKGGKGEAGREERVEGMPEEQQGL
LTCLERGECLVFDSQYNVHGHGSTDTVYWTSRQGEDEIKDIPCFLSNRYE
PYVVLRRCPTTPPFAEAFTGYGKNKIEHIAHLRYRGFTFSVLPPQAFLVH
FPHPTSRSKKSWLTGGREEGKAGWRERMDEMYSRFLGWASQEKASRARKI
THLCPPSNPTAVKP*
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mRNA from alignment at chr7:36810..39564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00100.1 ID=NO07G00100.1|Name=NO07G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2755bp|location=Sequence derived from alignment at chr7:36810..39564+ (Nannochloropsis oceanica)
AGACGCATGACCACTCCTCTGCAATAGGTGCTACCAGCAGCTTAGGATAC GCTCTGAAATTGATTTTTTGCATCAAGTGATGGCAAGGTATTTGCCCCGA CGAGGGTGTGTATGGCTTTTGGGCTTCCAACCTCCCACACCCACCATACC GAAGTGCCGTTCGGCCCACATATGGGCTTCTCGTGTTATGGGATGCCTTG CACGTGACTCACGTACATCCAGCTCTTTTCACTAGCAGGACTCCAGCAGC ATCTCTCATTCCATCTTTCTCTCGTTGAGCTTACCCTTGCCCCCTAGACC CTGTTACTAATCTTTCAATGTCCCAGGCACAAATTTGAAAGTAATTTGTA AGCCACCTCCTCATCACCCTCTCTACGGGTCCTGCATACACACAGAAACA GCAACAAGCAGCGGCAGATAACCTTGACAACATGAAATAGTCGATAGTAC ATTACAAACAAACAAAGATCATGCACTCTTCCTCGACGCACCTTCCGCCC CGCGGCACCCCCGGCAGCTTCATTGTCCTCCGTTTCTCCCTCTTCCTCTT CCTCCTGTCTGCCTACGTGCTGGGGCTCTTCTCGCGATCTCTCCCCGTCC CTCCTGACGGAATTGGTGATGCCAATACGCGCCCACAATACATCACGCTG CGACACGGCGGCGGCCGTACTGCTCCTTCCTTACCTAACGATTCTCTCAT TGCAGGCAGCAGCGCAGCGGCCTGGGCTGCAGGAGGTGAGGACGTGAACA GAAACAGCGCAATCACCACTGATGAAACGAAAGAGGAAGAGGGAATAAAG GAGGAAGCAGCGGCAGAAAAGCAAGATGTGCTGCAGGGGGAGGAGGAGAC GGAGAAATGGTGGGCCCGGGAGCAGAAGCAAGAAGAGGATGGGGACGAGG ATAAGGAGGGAGCCGTAGAAGAGGTGCAGCGAGACGCAGGTGGAGACGAT GACATGCACGTTCGAAAGGATGAAAGCCGAAGAACAGTTGACCACTCTTC TCTTGCATTTCCCTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCT CCCTTACCTCTTGGCCACCTCCCTCCTGGGCATGGCCCCTCAGCTCTGAG CACCAGGCGTACGGCGACGCGGCTTTCGGCATCAGATTCCCGCCGACGCC CCCCTCCTTCCCTCCCTCCTTCCCGCCCTCAAACACCACCTGCACGGGCA CCGGTCTGGACGAGACCGAAGACATCGATTTCACCCTCGTGTCCCAATCC TCCCCCGACCGTCTTTGGATGCTCCCTCACATCTGCCAGCGCTGGCAAGG ACCCATAGTCCTGGCCATCTACATGCTGAACTCCACCTCCGCCGACCATA CCTTCCTCTCCGAGATCACTGCCTGTCCGCACGCGCGCATCTTGCAGGTC TCGCCGCCCCCCTCCTCTCTCTCCGCCTCCTCCGCCCCCCGCTCCTCCTC TTCGGCCTACTGGGGCTCGCCGGATCACTATCCCGTCAATGCCCTGCGAA ATCTGGCGATCGCGGAGGTTACGACCACGCACTTCCTTCTGACGGACATG GACCTCTGGCCCTCCCTCCACCTCTACTCCCTCCTCAAGCACCTGTCGTC GAAGAACGGCAAGGGAGGGAGGGAGGGAGGGATGGAGAGAGGGGGAGGAG GCGAGACCAGGGAGCGATTCCTGGATCCGCTGCAGGCGTTGGTGGTGCCC GCGTTTGGCTACCTGGGAAAGGCGACGACGGCAGAGCAAGCACGGGGGGA GAAGGGGGGAAAGGGCGAGGCAGGGAGGGAGGAGCGGGTGGAGGGCATGC CGGAGGAGCAGCAGGGGCTGCTGACGTGCTTGGAGAGAGGGGAATGCCTC GTCTTTGACTCGCAGTACAATGTGCACGGGCACGGGAGCACAGACACAGT GTACTGGACAAGCAGGCAGGGCGAGGACGAGATCAAGGATATTCCTTGTT TCTTGTCGAACAGGTGGGGGGACGAGGGAGGGAGGGAGGGAGGGAGGGAG GGAGGTGTCAGGCACGGAGCTGATCCCTCCCCTGCATCAGACAAGCGTTT CTCCACGGTTCTCGTGACCTCATTTCTCTCTTGCTCCCTACCTCCCTGCC TCTTTCTCTTCCTCTTTATCTCCCTCTTTCCCTCCTCCGCCCCTCAGATA CGAGCCTTACGTGGTCCTTCGCCGCTGCCCCACCACCCCTCCCTTCGCCG AGGCCTTCACAGGCTATGGCAAGAACAAAATTGAGCACATTGCTCACCTC CGTTACCGAGGATTCACTTTCTCAGTCCTCCCCCCCCAGGCCTTCCTGGT ACATTTCCCCCATCCAACGAGTAGGAGCAAGAAGTCCTGGTTGACAGGAG GGCGGGAGGAAGGGAAGGCGGGATGGAGGGAGCGGATGGACGAGATGTAC AGCCGGTTTTTGGGTTGGGCGTCCCAGGAGAAGGCATCCAGAGCGCGTAA AATCACCCATTTGTGCCCTCCCTCCAACCCAACGGCTGTGAAGCCATAGA GATAGATGGATAGGAAGGAGGAGAGAGGGAGGGAGGGACATATTTAGAAA TTGGATCCAGGTATAACAGCGTAAGCCCTCGAATGTTGTCGTTTAGAAGT GAAAGGGAAGAGAGGAGATAAAACTAAATATTTAATACGGAAGGAGAATA AGACCGATTCAATATATCAAAGGATTAATAAATCAATCACTCAAAAGTCA AAAACTAAATATACAAGAAAAAGAATCAAAAAATCTACCGATTAATCAAA CAAAG
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Coding sequence (CDS) from alignment at chr7:36810..39564+

>NO07G00100.1 ID=NO07G00100.1|Name=NO07G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at chr7:36810..39564+ (Nannochloropsis oceanica)
ATGCACTCTTCCTCGACGCACCTTCCGCCCCGCGGCACCCCCGGCAGCTT
CATTGTCCTCCGTTTCTCCCTCTTCCTCTTCCTCCTGTCTGCCTACGTGC
TGGGGCTCTTCTCGCGATCTCTCCCCGTCCCTCCTGACGGAATTGGTGAT
GCCAATACGCGCCCACAATACATCACGCTGCGACACGGCGGCGGCCGTAC
TGCTCCTTCCTTACCTAACGATTCTCTCATTGCAGGCAGCAGCGCAGCGG
CCTGGGCTGCAGGAGGTGAGGACGTGAACAGAAACAGCGCAATCACCACT
GATGAAACGAAAGAGGAAGAGGGAATAAAGGAGGAAGCAGCGGCAGAAAA
GCAAGATGTGCTGCAGGGGGAGGAGGAGACGGAGAAATGGTGGGCCCGGG
AGCAGAAGCAAGAAGAGGATGGGGACGAGGATAAGGAGGGAGCCGTAGAA
GAGGTGCAGCGAGACGCAGGTGGAGACGATGACATGCACGTTCGAAAGGA
TGAAAGCCGAAGAACAGTTGACCACTCTTCTCTTGCATTTCCCTCTTCTT
CTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTACCTCTTGGCCACCT
CCCTCCTGGGCATGGCCCCTCAGCTCTGAGCACCAGGCGTACGGCGACGC
GGCTTTCGGCATCAGATTCCCGCCGACGCCCCCCTCCTTCCCTCCCTCCT
TCCCGCCCTCAAACACCACCTGCACGGGCACCGGTCTGGACGAGACCGAA
GACATCGATTTCACCCTCGTGTCCCAATCCTCCCCCGACCGTCTTTGGAT
GCTCCCTCACATCTGCCAGCGCTGGCAAGGACCCATAGTCCTGGCCATCT
ACATGCTGAACTCCACCTCCGCCGACCATACCTTCCTCTCCGAGATCACT
GCCTGTCCGCACGCGCGCATCTTGCAGGTCTCGCCGCCCCCCTCCTCTCT
CTCCGCCTCCTCCGCCCCCCGCTCCTCCTCTTCGGCCTACTGGGGCTCGC
CGGATCACTATCCCGTCAATGCCCTGCGAAATCTGGCGATCGCGGAGGTT
ACGACCACGCACTTCCTTCTGACGGACATGGACCTCTGGCCCTCCCTCCA
CCTCTACTCCCTCCTCAAGCACCTGTCGTCGAAGAACGGCAAGGGAGGGA
GGGAGGGAGGGATGGAGAGAGGGGGAGGAGGCGAGACCAGGGAGCGATTC
CTGGATCCGCTGCAGGCGTTGGTGGTGCCCGCGTTTGGCTACCTGGGAAA
GGCGACGACGGCAGAGCAAGCACGGGGGGAGAAGGGGGGAAAGGGCGAGG
CAGGGAGGGAGGAGCGGGTGGAGGGCATGCCGGAGGAGCAGCAGGGGCTG
CTGACGTGCTTGGAGAGAGGGGAATGCCTCGTCTTTGACTCGCAGTACAA
TGTGCACGGGCACGGGAGCACAGACACAGTGTACTGGACAAGCAGGCAGG
GCGAGGACGAGATCAAGGATATTCCTTGTTTCTTGTCGAACAGATACGAG
CCTTACGTGGTCCTTCGCCGCTGCCCCACCACCCCTCCCTTCGCCGAGGC
CTTCACAGGCTATGGCAAGAACAAAATTGAGCACATTGCTCACCTCCGTT
ACCGAGGATTCACTTTCTCAGTCCTCCCCCCCCAGGCCTTCCTGGTACAT
TTCCCCCATCCAACGAGTAGGAGCAAGAAGTCCTGGTTGACAGGAGGGCG
GGAGGAAGGGAAGGCGGGATGGAGGGAGCGGATGGACGAGATGTACAGCC
GGTTTTTGGGTTGGGCGTCCCAGGAGAAGGCATCCAGAGCGCGTAAAATC
ACCCATTTGTGCCCTCCCTCCAACCCAACGGCTGTGAAGCCATAG
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Synonyms
Publications