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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:27890..30931 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00070.1 vs.
Match: GAX21762.1 (CCR4-NOT transcription complex subunit 2 [Fistulifera solaris]) HSP 1 Score: 203.0 bits (515), Expect = 1.600e-48 Identity = 96/166 (57.83%), Postives = 123/166 (74.10%), Query Frame = 0
Query: 141 FGLLGLLAVIRMTDPDLNTLALGSDLTTLGLNLNASESLYSTFASPWAEAPTSREPKFFLPQCYNIQKQSLKLAHFGKFAQETLFYVFYAMPKDALQAYSAEELYRREWRFHKEMKLWVKQEG-GQYWYFDINHWEKRVFPQTSPANMSAIASGLLTEEDVRMHFP 306
+GLLGLL VIRMTD D N LALGSDLT LGLNL ++E +YSTF+ PW++ ++EP F LP CY +Q +LK H KF ETLFY+FY++PKD LQAY+A+ELY REWR+H E+KLW K++G QY YFDIN WE+R+F + N+ G L+EE+VR+ FP
Sbjct: 235 YGLLGLLGVIRMTDADRNALALGSDLTLLGLNLGSTEQIYSTFSGPWSDGAPAKEPHFQLPSCYYMQAPALKTGHLSKFQLETLFYIFYSLPKDVLQAYAAQELYTREWRYHGELKLWFKRDGSSQYLYFDINSWERRLFNGSMNQNL-----GFLSEEEVRVKFP 395
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00070.1 ID=NO07G00070.1|Name=NO07G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp
ATGGGACAGATGTCGCTGCAAGAAGAGACTCTTCCTTACGGCAGCGGGCA
GCAGCCCATGTACAGCCACCTCGTGGGCTCGAGCACCGGAGGGGGAGGGG
GAGGTGTGATGGGGCCTGGAGCGGGACAGAACGTGGTGGGCGGGGCAGGA
GGGGAGTTCGCCATCCAGCAAGAGGACTTTCCCGCGCTTCCAGGCAGCGG
GCCTTCTATGCCCAGTAGAGGGGGAGGAGGAGGGGGGGAAGGGCATCTGC
AGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGACGTTGGCA
GGCATGACCTCATCCTCGTCGGCCCCCCCTCCACACATCGAGGGCGTTAA
ATCTACCTCGACTCTGACCCGACAACAGCAGCAGCAACAGCAGCAGCAAC
AAGATGGGGGTGGGGAGCGCTTCGGATTGCTTGGTCTCCTCGCCGTCATC
CGCATGACCGACCCCGATCTCAACACACTCGCCCTCGGGAGCGACCTGAC
CACTCTCGGCCTGAACCTCAACGCCAGCGAGTCCCTCTACTCCACCTTCG
CCTCGCCATGGGCCGAGGCCCCCACCTCCCGCGAGCCCAAGTTCTTCCTT
CCCCAGTGCTACAACATCCAGAAGCAATCCTTGAAGCTCGCGCACTTCGG
AAAGTTTGCGCAGGAGACACTCTTCTACGTGTTTTACGCCATGCCCAAGG
ACGCCCTGCAGGCGTACAGTGCGGAGGAGCTGTATCGGCGGGAGTGGCGA
TTTCACAAGGAGATGAAGCTGTGGGTCAAGCAGGAGGGCGGCCAGTACTG
GTACTTCGACATCAATCACTGGGAGAAGCGCGTGTTTCCGCAGACCTCCC
CCGCCAATATGTCCGCCATCGCCTCGGGCTTGCTGACAGAGGAAGACGTA
CGGATGCACTTCCCAGTCGGTGGGGGGGCGACGCCGCCCATCAGTATGGT
GCAGGGTCATGCTTCTTTAGTGCAAGGCGGCGCCGGGGCTGCCACCTCTC
CTAATTTGACGGGATTGCCACCACCAGCCATCACGGGGGGAGGGCTGGGA
GGGGGTTGGGTGGGAGGCGGAGGGGGAGGCGGCGGGACGACGATCAAGTA
A back to topprotein sequence of NO07G00070.1 >NO07G00070.1-protein ID=NO07G00070.1-protein|Name=NO07G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MGQMSLQEETLPYGSGQQPMYSHLVGSSTGGGGGGVMGPGAGQNVVGGAG
GEFAIQQEDFPALPGSGPSMPSRGGGGGGEGHLQQQQQQQQQQQQQQTLA
GMTSSSSAPPPHIEGVKSTSTLTRQQQQQQQQQQDGGGERFGLLGLLAVI
RMTDPDLNTLALGSDLTTLGLNLNASESLYSTFASPWAEAPTSREPKFFL
PQCYNIQKQSLKLAHFGKFAQETLFYVFYAMPKDALQAYSAEELYRREWR
FHKEMKLWVKQEGGQYWYFDINHWEKRVFPQTSPANMSAIASGLLTEEDV
RMHFPVGGGATPPISMVQGHASLVQGGAGAATSPNLTGLPPPAITGGGLG
GGWVGGGGGGGGTTIK* back to topmRNA from alignment at chr7:27890..30931+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00070.1 ID=NO07G00070.1|Name=NO07G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=3042bp|location=Sequence derived from alignment at chr7:27890..30931+ (Nannochloropsis oceanica)
ATGGGACAGATGTCGCTGCAAGAAGAGGTAGGTGGTGGGTGAAAGAATGA
AGGAGCGGAGGGGGCCGCGGAGGTGACCGCGAAGGAAGGGAGGGAAGGAG
GGAGGGACAGCGCCTTAGCTGTCCCTCCTTTGTCTTGGAGCACACTCCCA
CCCCTCAACCCTCTGTCCTTCCGTCTTTTCCTCCTTCTCTTCACCTTTCG
CAACAGACTCTTCCTTACGGCAGCGGGCAGCAGCCCATGTACAGCCACCT
CGTGGGCTCGAGCACCGGAGGGGGAGGGGGAGGTGTGATGGGGCCTGGAG
CGGGACAGAACGTGGTGGGCGGGGCAGGAGGTAAGCCAGAAGGGAATGAG
GAGAGAGGAGGTAGATTGTCCTTGAAACGAGGGAGGAGGTGGATTAGTCA
AGAAATAATAGACGGTTTGGCAGGAGGAAGATCTGAAGGAGAGGTGTCAA
GGAAAAAAAAGTTGGGAGGGGATGTGGGGGTATCTTGCGTCCCTCTTTCT
ATGTCATTCCATCAGCGAGTAAGTGCTTATCCTGCCCCTCTCTTTCTTTC
TCTTCCCCCCCCCCATCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTTC
TTCAGGGGAGTTCGCCATCCAGCAAGAGGACTTTCCCGCGCTTCCAGGCA
GCGGGCCTTCTATGCCCAGTAGAGGGGGAGGAGGAGGGGGGGAAGGGCAT
CTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGACGTT
GGCAGGTGCGCATAGAGGGCGGGCTGGAGGGAGGGAGGGAAGGAGGGGGC
GAGAAATGAAGGAAGGAGGAAAGGAGGGGGTGGCGACGACGAGCCATGTG
CTTCACACCTCTCTTTGTTGTCGTCGTTGACGATTCTGACATCCTCCCTC
CCTCCCTCCCTCCCTCCCTTTCCCCTCCTCCTTAGGCATGACCTCATCCT
CGTCGGCCCCCCCTCCACACATCGAGGGCGTTAAATCTACCTCGACTCTG
ACCCGACAACAGCAGCAGGTCCGTCCCCTCCCTCCCTCCCTCCCCCCCCT
TCCCCTCCCTTCCCTTCCCCTTATTCCTTCTCACTCCCTGCGCTTGAAGC
AACAGCAGCAGCAACAAGATGGGGGTGGGGAGCGCTTCGGATTGCTTGGT
CTCCTCGCCGTCATCCGCATGACCGACCCCGATCTCAACACACTCGCCCT
CGGTAGGTACTGGCCCTTCCTCTCTCCCGCCCTCCCTCCCGCCCGCCCGC
CCGCCCTCCCTCTCGCCCCCCTTCCTTTTATGTCGACGTCTTCCCTGCGT
CCTACCCTGCGGTCTCTCAACCCTCCCTCCCTCCCCTCCTTCCTCCCCTC
CTCTCCGATCCCCCTCAGGGAGCGACCTGACCACTCTCGGCCTGAACCTC
AACGCCAGCGAGTCCCTCTACTCCACCTTCGCCTCGCCATGGGCCGAGGC
CCCCACCTCCCGCGAGCCCAAGTTCTTCCTTCCCCAGTGCTACAACATCC
AGAAGCAATGTGCGTGCGCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCGTTTTGTCTGTCCCGAAGAGCGCCAACGCATTCCCCCCACCGCCCATG
GTCTCATCGCCGACCCCTCATCATTCCCTCCCTCCCTCCCTCCCTTCTCT
CTTCATCATAATCCCCCAGCCTTGAAGCTCGCGCACTTCGGAAAGTTTGC
GCAGGAGACACTCTTCTACGTGTTTTACGCCATGCCCAAGGACGCCCTGC
AGGTTCGAGGGGAGGGAGGGAGGCAGGGAGGGAGGCAGGGAGGCAGGGAG
GGAGAGGAATGTGACACAAGGCGGCAACATGTCCTCTGCATGGTCTGTTT
TTTTCACGCTCCTTCTCCCTCGCCCCATCCCTCCCTCCCTCTCTCCTTCC
CTCCCACGTCCCCTCCCAGGCGTACAGTGCGGAGGAGCTGTATCGGCGGG
AGTGGCGATTTCACAAGGAGATGAAGCTGTGGGTCAAGCAGGAGGGCGGC
CAGTACTGGTACTTCGACATCAATCACTGGTGCGTCCTTCCTCCCGCCCT
CCTTCCCTTCGCTCCCTCCCTCTTAGGGGCCCTTATCGTCTGTTTCCTCT
CCCTTCGCGTTTCTCGCGTAATCGTGTTCCTCTTCCTTTCCTTTTTCGCC
GCTTTGTCGTCGTAGTTTTGTCTGCTTCTCTCGGCCTGCCTGCTCTATGT
TCCCCTTCTCCTCACCACTGACCCCCCTACGCGTCCCATGGCCCCTCATC
CACCCCCTCATTCCCCCTCCCCTTCCCTTTGCCCCTCCCTCCTCCTCTTC
CCCCTCCTCCTTTCTCCTTGACAGGGAGAAGCGCGTGTTTCCGCAGACCT
CCCCCGCCAATATGTCCGCCATCGCCTCGGGTGCGTCTTGAGGGAGGGAA
GGAGGGATGGAGGAAGGAAGGGACGGAGGGAGGAACGGAGGGAAGGGAGG
GAGGGAAGGAAGGAGGGAGAGAGGAGGAGGCTAAATAGAATTATATTTAT
CTGGTCATGGCCATTGCACCAATTTTCACCCCTTAATCCCTCCCTCCTTC
CCTCCCATTTGTAGGCTTGCTGACAGAGGAAGACGTACGGATGCACTTCC
CAGTCGGTGGGGGGGCGACGCCGCCCATCAGTATGGTGCAGGGTCATGGT
AGGTGCCTCTCGGCGGGGAGAAGGGGGAGGCTTGGAGAAAGTCTAGGGCG
CGAAAGATGGAGAAAGATGTGTGCATCCACTGTTCACTGAGTGTCGTCGA
AATTCATCCCCTACATACTCTCCTTTTTCTCCTGGGACGGCTCGTGTAGT
GCCCATCACCCTCTTCCTCCTCGAATGTATTCGTACTGTGGCACGGGGCT
CACGCTTTAATTCTCGTCGCTTCCCCCCCTGCCCTTGATACCCCAATATC
AGCTTCTTTAGTGCAAGGCGGCGCCGGGGCTGCCACCTCTCCTAATTTGA
CGGGATTGCCACCACCAGCCATCACGGGGGGAGGGCTGGGAGGGGGTTGG
GTGGGAGGCGGAGGGGGAGGCGGCGGGACGACGATCAAGTAA back to topCoding sequence (CDS) from alignment at chr7:27890..30931+ >NO07G00070.1 ID=NO07G00070.1|Name=NO07G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr7:27890..30931+ (Nannochloropsis oceanica)
ATGGGACAGATGTCGCTGCAAGAAGAGACTCTTCCTTACGGCAGCGGGCA
GCAGCCCATGTACAGCCACCTCGTGGGCTCGAGCACCGGAGGGGGAGGGG
GAGGTGTGATGGGGCCTGGAGCGGGACAGAACGTGGTGGGCGGGGCAGGA
GGGGAGTTCGCCATCCAGCAAGAGGACTTTCCCGCGCTTCCAGGCAGCGG
GCCTTCTATGCCCAGTAGAGGGGGAGGAGGAGGGGGGGAAGGGCATCTGC
AGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGACGTTGGCA
GGCATGACCTCATCCTCGTCGGCCCCCCCTCCACACATCGAGGGCGTTAA
ATCTACCTCGACTCTGACCCGACAACAGCAGCAGCAACAGCAGCAGCAAC
AAGATGGGGGTGGGGAGCGCTTCGGATTGCTTGGTCTCCTCGCCGTCATC
CGCATGACCGACCCCGATCTCAACACACTCGCCCTCGGGAGCGACCTGAC
CACTCTCGGCCTGAACCTCAACGCCAGCGAGTCCCTCTACTCCACCTTCG
CCTCGCCATGGGCCGAGGCCCCCACCTCCCGCGAGCCCAAGTTCTTCCTT
CCCCAGTGCTACAACATCCAGAAGCAATCCTTGAAGCTCGCGCACTTCGG
AAAGTTTGCGCAGGAGACACTCTTCTACGTGTTTTACGCCATGCCCAAGG
ACGCCCTGCAGGCGTACAGTGCGGAGGAGCTGTATCGGCGGGAGTGGCGA
TTTCACAAGGAGATGAAGCTGTGGGTCAAGCAGGAGGGCGGCCAGTACTG
GTACTTCGACATCAATCACTGGGAGAAGCGCGTGTTTCCGCAGACCTCCC
CCGCCAATATGTCCGCCATCGCCTCGGGCTTGCTGACAGAGGAAGACGTA
CGGATGCACTTCCCAGTCGGTGGGGGGGCGACGCCGCCCATCAGTATGGT
GCAGGGTCATGCTTCTTTAGTGCAAGGCGGCGCCGGGGCTGCCACCTCTC
CTAATTTGACGGGATTGCCACCACCAGCCATCACGGGGGGAGGGCTGGGA
GGGGGTTGGGTGGGAGGCGGAGGGGGAGGCGGCGGGACGACGATCAAGTA
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