NO07G00060.1, NO07G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00060.1
Unique NameNO07G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length396
Alignment locationchr7:26976..27872 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:26976..27872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO07G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00060NO07G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00060.1NO07G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00060.1.cds1NO07G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00060.1.cds2NO07G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00060.1.cds3NO07G00060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00060.1.cds4NO07G00060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00060.1 ID=NO07G00060.1|Name=NO07G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=396bp
ATGAGGTCGACCTTATCAAACAGACGCCGGCCAGAGAACGCCTCAGGACT
GGCTAGTGTCCCTGGAGGCAGCAGCGGCGGTGGAGGAGGAATGATGGGCG
GATTGGGCTATGTTGGGGCAGCCTCCACACAACAGAATGGAGGAGCCGGA
GGAGGACAAGGGCAGCAAACAGGAAGCGGAGGAGGAGGGGGGCAGTTCGC
TCAGGGGGGTACCACAATGAATGGGCGCAATTCGAGTTTGCAGGCACTCG
CCTCCCCCTCACAAGGAGGGCAGCCGCCAAATACAGCAGCCGGCGGCGGA
CCCCTTACATTCGACTTGAACGAATTCCCAGCCCTGGCACCAGGAGGGGG
AGGAGGAGGGGGAGGGGAGGGGGAGGGGGAGGAGGGAATTCAATAG
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protein sequence of NO07G00060.1

>NO07G00060.1-protein ID=NO07G00060.1-protein|Name=NO07G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MRSTLSNRRRPENASGLASVPGGSSGGGGGMMGGLGYVGAASTQQNGGAG
GGQGQQTGSGGGGGQFAQGGTTMNGRNSSLQALASPSQGGQPPNTAAGGG
PLTFDLNEFPALAPGGGGGGGGEGEGEEGIQ*
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mRNA from alignment at chr7:26976..27872+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00060.1 ID=NO07G00060.1|Name=NO07G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp|location=Sequence derived from alignment at chr7:26976..27872+ (Nannochloropsis oceanica)
ATGAGGTCGACCTTATCAAACAGACGTGCGGATGCTTCTGGACTTGTTTG
GGAGGGCTTGAGGGGGTGATGTTGCTCGATAGGGTGAAGCAAAGAAGACT
ATCCCTCTAAAGAAGATGATCTTATAAAGCACTTGCTTACCTCTCTTACA
AACGACTGCATATCCGTAGGTGAGCCCCGTCGTCACCATAAGAACAAGGG
AAAGGATATCAACGATCTAGGAAAGCACAATTGAGGCGAGTCGACGGAAA
GGGTGGAGCCTTTCTCTTCTCGCGGTGGCCCAGGCCGGCCAGGTACAGTG
ACCCTCCCTCACTCGCTCACTTCCTCCCTTCCCTGTCCTCCGAACTCACT
CTCATCCTTCGCTTTACCACGCTATAGAGAACGCCTCAGGACTGGCTAGT
GTCCCTGGAGGCAGCAGCGGCGGTGGAGGAGGAATGATGGGCGGATTGGG
CTATGTTGGGGCAGCCTCCACACAACAGAATGGAGGAGCCGGAGGAGGAC
AAGGGCAGCAAACAGGAAGCGGAGGAGGAGGGGGGCAGTTCGCTCAGGGG
GGTACCACAATGAATGGGCGCAATTCGAGTTTGGTACGTTTTTTGTGGGG
GAGCGGAACAAATTTTCGGAGGGAGGAAAGGAAGGAAAGGGCAGGCATGA
GGGCACGGCAAGGTGAGCGGATCAACACCGACACCCACCCCCTTTCTCCC
CACTCTTCCTCTCCCTCTGTCTGTTCTCCTCCTCTCAATAGCAGGCACTC
GCCTCCCCCTCACAAGGAGGGCAGCCGCCAAATACAGCAGCCGGCGGCGG
ACCCCTTACATTCGACTTGAACGAATTCCCAGCCCTGGCACCAGGAGGGG
GAGGAGGAGGGGGAGGGGAGGGGGAGGGGGAGGAGGGAATTCAATAG
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Coding sequence (CDS) from alignment at chr7:26976..27872+

>NO07G00060.1 ID=NO07G00060.1|Name=NO07G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at chr7:26976..27872+ (Nannochloropsis oceanica)
ATGAGGTCGACCTTATCAAACAGACGCCGGCCAGAGAACGCCTCAGGACT
GGCTAGTGTCCCTGGAGGCAGCAGCGGCGGTGGAGGAGGAATGATGGGCG
GATTGGGCTATGTTGGGGCAGCCTCCACACAACAGAATGGAGGAGCCGGA
GGAGGACAAGGGCAGCAAACAGGAAGCGGAGGAGGAGGGGGGCAGTTCGC
TCAGGGGGGTACCACAATGAATGGGCGCAATTCGAGTTTGCAGGCACTCG
CCTCCCCCTCACAAGGAGGGCAGCCGCCAAATACAGCAGCCGGCGGCGGA
CCCCTTACATTCGACTTGAACGAATTCCCAGCCCTGGCACCAGGAGGGGG
AGGAGGAGGGGGAGGGGAGGGGGAGGGGGAGGAGGGAATTCAATAG
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Synonyms
Publications