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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:19869..24358 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00030.1 vs.
Match: EWM27373.1 (hypothetical protein Naga_100696g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 245.7 bits (626), Expect = 2.100e-61 Identity = 123/189 (65.08%), Postives = 146/189 (77.25%), Query Frame = 0
Query: 1 MVFHPIFLSPALLQTPALLQSSSLSLALIACLSMAVLYVAALYVLPASIRQRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTGWTNPAIFLPLLAIICLFFGPIVVICAESYYDRWYEVVMHLSSSPLLFRLRRRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPLTE 190
MV HP L P+LL+ A LQ SSL+LAL ACLSMA+LYVA+LY+LPASIR RHRDD H+KARF SV+ ACLLSIRIFLLF +P+P A P+Y WLG TGW NP++FLPLLAI+CLF GPI V+ AE YYDRWYE+V + SS LL+ L RR P P +W +W ++RR H K+ LWRNLVVAPLTE
Sbjct: 1 MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTE 189
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00030.1 ID=NO07G00030.1|Name=NO07G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3686bp TCCAGTTGCTGGCAGCAACGGAGGATGAGGGAAGGGGATGTAGAAAGGTT GAAGACAAGAGGAGATGAGCAAATGTCGAGGGCTCATGGGGCTCAGGCTC TTGTGCCCTATTAGCAACTAGATTGATACCCTTTTGAAGCTCTCGAGCAT CGAAGGCCATGTCGACCCTCTCCCTCGTTTCCTCCCCCCCTTCCCACGCC CTGTCATTCCCTTGCTGCGACTTACCCGCACTTCGCTCTTGTGCCGCTTG CGCATCTCCTCCTGCGTTTCCCCGACTGTCTCTCGCGCGGCCTCCTCTTC TTTCATCATGGCCTCGCTTGGGCTCGTGTGAGGCCTGCGTGTAGGGAGAC GAGGAGGTAGAGGCGAAATCGGATGATGACCGAGGTGAGTCGTCGCTCGT GTGCAATTAAAAAAAATCATTAAGAGGACAAAAAACATGCAAATGGCCTC GTTGACTACTGCGTCTCTATGTCTCTTATTACAGAAACTGGTTCACTGCC TGGGTGTGTGACCAAAGGCCAGAAGGTACCTAACTGCTTGTCCATGGCAA CCAACATCGCCGCTTCGTCGCCCAAAAATCAAGCAACGTCTCACTCCCCT TTTCTCTTTCTCACGCACACACATAGACACACTCACACGCCGTGGCGAAC TGCCCATTTGCTGTACTCTCCCGCCCTCCACCGCCATGGTGTTCCATCCC ATATTTCTCTCGCCCGCCCTGCTTCAAACCCCTGCCCTCCTCCAGTCTTC CTCCCTCAGTCTCGCCCTCATTGCGTGTCTGTCCATGGCCGTGCTTTACG TTGCCGCGCTCTACGTCTTGCCGGCCTCTATCAGGCAACGGCACCGTGAC GATGCCACCCACGTCAAGGCGCGATTCTTCTCTGTGGTGGCGGCCTGTCT GCTTTCAATACGGATCTTCTTGCTCTTCACTAATCCCGCGCCTGACGCTG TGCATCCCGTCTATCACTGGCTGGGCTTCACAGGCTGGACGAACCCTGCC ATCTTTCTCCCCCTCCTGGCCATCATCTGCCTCTTCTTCGGGCCCATCGT AGTCATTTGCGCAGAGAGCTACTACGATCGTTGGTATGAGGTAGTGATGC ACCTATCCTCTTCTCCCCTCCTCTTTCGGCTGCGTCGTCGTCGTATCCCC CTGCCCTCGACCTGGTACGACTGGTGGGAGAGGAGGAGAATCGCGCACAG GCTGACCAAGGAAACGCTATGGAGAAACCTGGTGGTGGCGCCACTGACGG AGGAAATCGTATTCCGTGCCTGCATGCTCCCTCTCCTTTACCAAGCTTCC TCCTCCCCTTCCTCCCTGGATTCCCCCCGTGCTATCCCTTTCGTGAAACT GATCTTCTTGTCACCCCTTTTTTTTGGTCTGGCGCACGCCCACCACGCCC TGCAGCGGGTGCGAGAAGGATTGCCGCCCGCACAGGCCCTTCTCGAAGTA GCGTTGCAAGTTGCCTACACCAGCATCTTCGGCTGGCATGCAGCGTTCCT TTTCCTCCGCACCGGCTCTCTCCTGCCCTGCATCCTAACCCACTCCTTCT GCAACTTTGTGGGCCTCCCAAACCTGGCCTTTATGCTTTCACCCTCCTCT CTTACGCCCTCTCCTGCCTCCGCCTTCCTCCTGTATGTGCATCGATGGAA GTTTCTCGCTGCTCACCTTCTAGGGATCGCCCTTTTTGTCGCACTTTTGT TCCCATTCTCGGAGCCGAAGCTGTTCACCGAGAGAAGATTAGAAGGGGAA AGAGGTGTGCCATTATACTGGCAATGAGAACGGCAAAAAAGGCATGCGAG GGCGAGGGGTTTGTGGATAAATTCGTCCTTGAAAGGGAGCTCTGGAGGAA TTAATCAAAATAAAGAAATGAAATGAAAATGTCTCTATAAGTAGGCTTCG ACATATTTAGCGCTAAAGATCCCATTTGGCAAATGATGCTCGCTATTTTG CTTTTGATGACAGTGAATTGTGGGCGTTAATCATTTATGATACTGGCCAT GTATTCGACGCGCCCGCGCCTCATCATCATATTTGGGAGAAATGAGACGG ATCTCGAAGGAAGTAAGTGCCCACCCAACAATTCACATGCGAGGCCCAAG AATGTCTCTTACGTGATTGCTAGGCTCCATGATTTGTAGCATCCATCTGG CTTGTGTTATCCGTTGAACGTCAGGGAGCGTAATACAAATAAACAAATTG TTTCGTTTTGGGGGGGGAAGAGGTGGGGGGTATTTTTTCCCCAACTTACA ACCACACAAGCACTCCTCTGTATCTGCATCGTTACCTATGTACACGTTTA CATACAATTTACGAGTGAATGGCATAGCCCATGTGCGGAAAACACGGCTT GTCGAGTTTCAAACCAGCAGCCGTGCACCAACCATCCCTCTGCTGCGCCC CTCTTTCCACTGCGCTTCTCCATCCTCCCGGTTTAGGTGATGCGTACCAA GTCCTATCCTAGACTCCGATGCTTCGTATACGCCAAGAATAATGTATGGG TGTATGGCGGTACGCGTCGTAGCGACATACGGGACAGCTACGCACGTTGT GCAGCCGTCCGCCAGCTGCCGCTGCCGCCCAGTCATCAAGTCTTGCCTGT TGTCAAAGTCAATATTTTGTGCCAATTCTTGAATAGTGCCCCAATCAGGT AAGAATGTGCCTGTTCTCTATACCAAAATTGATTTACCAGATAGCCCATA AGAGGAGCGACAGCGAAAGAAATAAAGAAACGATTCAAGTAACATGGCCA CAGTGGTGGGCTTTAGAAAGGTCACTGCGAGGACCCAAATAAACCAAAAA GCAACGCGCACAACACGCACTCAATTGTCGTTCACACGACATGAAGCAGT CAGTCACTACACTGGCGGAGATGAGTCTCCAAACGTCTCCACGCCGGAGA TACACGCACGAGCGTTCGACCGACAAAAGCCCTACCTAACCTATCCCCTT TCATTCAACTATACGTGCTTTTCATCTCCCAATTGATTGCCATATCCCTC CGGTACAAGCATACACACTACGCTGCCTATGTGAGAAACGACAACTATCG ATAAAAAGGGGCCAAGGCATTGATATGAGCCGCTGGCCCACTCTTTCACG AGTGTGCTCTCCAGAGAGGAGGGGAAGTCTCACGTCCACTTCCGAGTCGT CATATTACGCTGAAATGTAAAGTAGAAATGCTCGTCCGCTGCAAGAAAGA GTGAGATGGTTTTAGCCCTGCCTATAAACGTGTGGTAGGAGGGGGGGAAG GTGAAAGGGAGAAGGTGGATGCTGCAGCTCGACCATGCATGGTTACCCCC CGACCCATCCAGAGCCTATTTTTACCCTCTTTCTCTCGTGACACTCGAGC TTGCCTCTTTCCCTCGCCTCTAATCTCCCTCTCATGCCCCCGTCCTCTTT CAGATGTTTCCCATCCTCGCCCTTTCAGCCTCCACCTTTCCTTCGCCACC CTTACCCCGCATACGCTCCTTGTGTTTGCCCTCTCAAACCTATTTTCTAC AATTTCGTAGGCATATCATAAAGCTTGGCCATATCAATGCCCTTAGGATG GTCTATTCGTCTATTTCTCTCCCTCCCTCTCTCTCCCTCTTCCTCTACTT CTCACCTCTTCCCCTCCGTCGTCTTGTGGCGGCCTCGGACGCCTCCAGCT TGCTCTCAAGAATGTCTGGATCACATGTGTACCTGT back to topprotein sequence of NO07G00030.1 >NO07G00030.1-protein ID=NO07G00030.1-protein|Name=NO07G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp MVFHPIFLSPALLQTPALLQSSSLSLALIACLSMAVLYVAALYVLPASIR QRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTG WTNPAIFLPLLAIICLFFGPIVVICAESYYDRWYEVVMHLSSSPLLFRLR RRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPLTEEIVFRACMLPL LYQASSSPSSLDSPRAIPFVKLIFLSPLFFGLAHAHHALQRVREGLPPAQ ALLEVALQVAYTSIFGWHAAFLFLRTGSLLPCILTHSFCNFVGLPNLAFM LSPSSLTPSPASAFLLYVHRWKFLAAHLLGIALFVALLFPFSEPKLFTER RLEGERGVPLYWQ* back to topmRNA from alignment at chr7:19869..24358- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00030.1 ID=NO07G00030.1|Name=NO07G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=4490bp|location=Sequence derived from alignment at chr7:19869..24358- (Nannochloropsis oceanica) TCCAGTTGCTGGCAGCAACGGAGGATGAGGGAAGGGGATGTAGAAAGGTT
GAAGACAAGAGGAGATGAGCAAATGTCGAGGGCTCATGGGGCTCAGGCTC
TTGTGCCCTATTAGCAACTAGATTGATACCCTTTTGAAGCTCTCGAGCAT
CGAAGGCCATGTCGACCCTCTCCCTCGTTTCCTCCCCCCCTTCCCACGCC
CTGTCATTCCCTTGCTGCGACTTACCCGCACTTCGCTCTTGTGCCGCTTG
CGCATCTCCTCCTGCGTTTCCCCGACTGTCTCTCGCGCGGCCTCCTCTTC
TTTCATCATGGCCTCGCTTGGGCTCGTGTGAGGCCTGCGTGTAGGGAGAC
GAGGAGGTAGAGGCGAAATCGGATGATGACCGAGGTGAGTCGTCGCTCGT
GTGCAATTAAAAAAAATCATTAAGAGGACAAAAAACATGCAAATGGCCTC
GTTGACTACTGCGTCTCTATGTCTCTTATTACAGAAACTGGTTCACTGCC
TGGGTGTGTGACCAAAGGCCAGAAGGTACCTAACTGCTTGTCCATGGCAA
CCAACATCGCCGCTTCGTCGCCCAAAAATCAAGCAACGTCTCACTCCCCT
TTTCTCTTTCTCACGCACACACATAGACACACTCACACGCCGTGGCGAAC
TGCCCATTTGCTGTACTCTCCCGCCCTCCACCGCCATGGTGTTCCATCCC
ATATTTCTCTCGCCCGCCCTGCTTCAAACCCCTGCCCTCCTCCAGTCTTC
CTCCCTCAGTCTCGCCCTCATTGCGTGTCTGTCCATGGCCGTGCTTTACG
TTGCCGCGCTCTACGTCTTGCCGGCCTCTATCAGGCAACGGCACCGTGAC
GATGCCACCCACGTCAAGGCGCGATTCTTCTCTGTGGTGGCGGCCTGTCT
GCTTTCAATACGGTAGGGTTGGAGAACGGAGGAGAGGAAGGAGGCCAGAA
GGGGAGGGGATGATAATGCTGACGAATCAAAACGAACCAAACTACCAGGA
TCTTCTTGCTCTTCACTAATCCCGCGCCTGACGCTGTGCATCCCGTCTAT
CACTGGCTGGGCTTCACAGGTATGTCCACACCTTTCTTGATTTCGCTCTT
TCGCTGCGCTCTTCCTCCTTACCCACCTTCCATCCCCTCCTACTTACGAC
CCGCTTCATATTTTCTTTCCTCCTCGTTGGCCTCAAACTATTGACGACAT
AATGGTTAGGCTGGACGAACCCTGCCATCTTTCTCCCCCTCCTGGCCATC
ATCTGCCTCTTCTTCGGGCCCATCGTAGTCATTTGCGCAGGTATGTAAAG
GAAAGTATGCTATCCTGTGCTCAGCCGCCCAATTTTTAACCCTTCCTCCT
TCCATCCCTTCATTTCTGCTTATGGGTCTTCTATCGTGGACGATAAGAAG
TGGAGATACGACACTCCCTGTCCTGTCCTTTCCCCTTCCTCCTCTCATCC
CTATCTGCTTACCTCCCTCCTGTTCGTCTCTCAGAGAGCTACTACGATCG
TTGGTATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGC
TGCGTCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAG
AGGAGGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCT
GGTGGTGGCGCCACTGACGGAGGTAGGGCATGGGAGGGTCAACACAAAGG
GACAGAAATTTGAGAACTTCATTCCATCCATCGCCCGGCCTCGACTTGAA
CCTATCTGCCTTCTTTTTTCAAGGTCCCTTCTTCCCTCCCTCCTTCCGCT
TACAGGAAATCGTATTCCGTGCCTGCATGCTCCCTCTCCTTTACCAAGCT
TCCTCCTCCCCTTCCTCCCTGGATTCCCCCCGTGCTATCCCTTTCGTGAA
ACTGATCTTCTTGTCACCCCTTTTTTTTGGTCTGGCGCACGCCCACCACG
CCCTGCAGCGGGTGCGAGAAGGATTGCCGGTAGGGGACGAGGGAAGGCGG
GATGAAGGAGGCAAATCCTAAAAGAGAGAGCACCTATGAAGAGCTGAGGC
AAAAGAGCGTGAGGTTCATGAAAATCTGTTTTTCTCCCCTTCGCTCTCCT
CGTTTGCCTCACAGCCCGCACAGGCCCTTCTCGAAGTAGCGTTGCAAGTT
GCCTACACCAGCATCTTCGGCTGGCATGCAGGTAAGGGCATGTTGGGGGC
CGGAGGGATAGAGAGAAAGTTAGGAAAGAGGACGCCTTCAACTTTTCCCC
ATTCTCGATTATATATTCAGTTACCTCTTTCTTCTTCCACTCTCCAGCGT
TCCTTTTCCTCCGCACCGGCTCTCTCCTGCCCTGCATCCTAACCCACTCC
TTCTGCAACTTTGTGGGCCTCCCAAACCTGGCCTTTATGCTTTCACCCTC
CTCTCTTACGCCCTCTCCTGCCTCCGCCTTCCTCCTGTATGTGCATCGAT
GGAAGTTTCTCGCTGCTCACCTTCTAGGGATCGCCCTTTTTGTCGCACTT
TTGTTCCCATTCTCGGAGCCGAAGCTGTTCACCGAGAGAAGATTAGAAGG
GGAAAGAGGTGTGCCATTATACTGGCAATGAGAACGGCAAAAAAGGCATG
CGAGGGCGAGGGGTTTGTGGATAAATTCGTCCTTGAAAGGGAGCTCTGGA
GGAATTAATCAAAATAAAGAAATGAAATGAAAATGTCTCTATAAGTAGGC
TTCGACATATTTAGCGCTAAAGATCCCATTTGGCAAATGATGCTCGCTAT
TTTGCTTTTGATGACAGTGAATTGTGGGCGTTAATCATTTATGATACTGG
CCATGTATTCGACGCGCCCGCGCCTCATCATCATATTTGGGAGAAATGAG
ACGGATCTCGAAGGAAGTAAGTGCCCACCCAACAATTCACATGCGAGGCC
CAAGAATGTCTCTTACGTGATTGCTAGGCTCCATGATTTGTAGCATCCAT
CTGGCTTGTGTTATCCGTTGAACGTCAGGGAGCGTAATACAAATAAACAA
ATTGTTTCGTTTTGGGGGGGGAAGAGGTGGGGGGTATTTTTTCCCCAACT
TACAACCACACAAGCACTCCTCTGTATCTGCATCGTTACCTATGTACACG
TTTACATACAATTTACGAGTGAATGGCATAGCCCATGTGCGGAAAACACG
GCTTGTCGAGTTTCAAACCAGCAGCCGTGCACCAACCATCCCTCTGCTGC
GCCCCTCTTTCCACTGCGCTTCTCCATCCTCCCGGTTTAGGTGATGCGTA
CCAAGTCCTATCCTAGACTCCGATGCTTCGTATACGCCAAGAATAATGTA
TGGGTGTATGGCGGTACGCGTCGTAGCGACATACGGGACAGCTACGCACG
TTGTGCAGCCGTCCGCCAGCTGCCGCTGCCGCCCAGTCATCAAGTCTTGC
CTGTTGTCAAAGTCAATATTTTGTGCCAATTCTTGAATAGTGCCCCAATC
AGGTAAGAATGTGCCTGTTCTCTATACCAAAATTGATTTACCAGATAGCC
CATAAGAGGAGCGACAGCGAAAGAAATAAAGAAACGATTCAAGTAACATG
GCCACAGTGGTGGGCTTTAGAAAGGTCACTGCGAGGACCCAAATAAACCA
AAAAGCAACGCGCACAACACGCACTCAATTGTCGTTCACACGACATGAAG
CAGTCAGTCACTACACTGGCGGAGATGAGTCTCCAAACGTCTCCACGCCG
GAGATACACGCACGAGCGTTCGACCGACAAAAGCCCTACCTAACCTATCC
CCTTTCATTCAACTATACGTGCTTTTCATCTCCCAATTGATTGCCATATC
CCTCCGGTACAAGCATACACACTACGCTGCCTATGTGAGAAACGACAACT
ATCGATAAAAAGGGGCCAAGGCATTGATATGAGCCGCTGGCCCACTCTTT
CACGAGTGTGCTCTCCAGAGAGGAGGGGAAGTCTCACGTCCACTTCCGAG
TCGTCATATTACGCTGAAATGTAAAGTAGAAATGCTCGTCCGCTGCAAGA
AAGAGTGAGATGGTTTTAGCCCTGCCTATAAACGTGTGGTAGGAGGGGGG
GAAGGTGAAAGGGAGAAGGTGGATGCTGCAGCTCGACCATGCATGGTTAC
CCCCCGACCCATCCAGAGCCTATTTTTACCCTCTTTCTCTCGTGACACTC
GAGCTTGCCTCTTTCCCTCGCCTCTAATCTCCCTCTCATGCCCCCGTCCT
CTTTCAGATGTTTCCCATCCTCGCCCTTTCAGCCTCCACCTTTCCTTCGC
CACCCTTACCCCGCATACGCTCCTTGTGTTTGCCCTCTCAAACCTATTTT
CTACAATTTCGTAGGCATATCATAAAGCTTGGCCATATCAATGCCCTTAG
GATGGTCTATTCGTCTATTTCTCTCCCTCCCTCTCTCTCCCTCTTCCTCT
ACTTCTCACCTCTTCCCCTCCGTCGTCTTGTGGCGGCCTCGGACGCCTCC
AGCTTGCTCTCAAGAATGTCTGGATCACATGTGTACCTGT back to topCoding sequence (CDS) from alignment at chr7:19869..24358- >NO07G00030.1 ID=NO07G00030.1|Name=NO07G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at chr7:19869..24358- (Nannochloropsis oceanica) ATGGTGTTCCATCCCATATTTCTCTCGCCCGCCCTGCTTCAAACCCCTGC CCTCCTCCAGTCTTCCTCCCTCAGTCTCGCCCTCATTGCGTGTCTGTCCA TGGCCGTGCTTTACGTTGCCGCGCTCTACGTCTTGCCGGCCTCTATCAGG CAACGGCACCGTGACGATGCCACCCACGTCAAGGCGCGATTCTTCTCTGT GGTGGCGGCCTGTCTGCTTTCAATACGGATCTTCTTGCTCTTCACTAATC CCGCGCCTGACGCTGTGCATCCCGTCTATCACTGGCTGGGCTTCACAGGC TGGACGAACCCTGCCATCTTTCTCCCCCTCCTGGCCATCATCTGCCTCTT CTTCGGGCCCATCGTAGTCATTTGCGCAGAGAGCTACTACGATCGTTGGT ATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGCTGCGT CGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAGAGGAG GAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCTGGTGG TGGCGCCACTGACGGAGGAAATCGTATTCCGTGCCTGCATGCTCCCTCTC CTTTACCAAGCTTCCTCCTCCCCTTCCTCCCTGGATTCCCCCCGTGCTAT CCCTTTCGTGAAACTGATCTTCTTGTCACCCCTTTTTTTTGGTCTGGCGC ACGCCCACCACGCCCTGCAGCGGGTGCGAGAAGGATTGCCGCCCGCACAG GCCCTTCTCGAAGTAGCGTTGCAAGTTGCCTACACCAGCATCTTCGGCTG GCATGCAGCGTTCCTTTTCCTCCGCACCGGCTCTCTCCTGCCCTGCATCC TAACCCACTCCTTCTGCAACTTTGTGGGCCTCCCAAACCTGGCCTTTATG CTTTCACCCTCCTCTCTTACGCCCTCTCCTGCCTCCGCCTTCCTCCTGTA TGTGCATCGATGGAAGTTTCTCGCTGCTCACCTTCTAGGGATCGCCCTTT TTGTCGCACTTTTGTTCCCATTCTCGGAGCCGAAGCTGTTCACCGAGAGA AGATTAGAAGGGGAAAGAGGTGTGCCATTATACTGGCAATGA back to top
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