NO07G00020.1, NO07G00020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00020.1
Unique NameNO07G00020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1409
Alignment locationchr7:6579..7987 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:6579..7987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00020.1 vs.
Match: CBN76713.1 (hypothetical protein Esi_0000_0516 [Ectocarpus siliculosus])

HSP 1 Score: 80.9 bits (198), Expect = 6.100e-12
Identity = 67/236 (28.39%), Postives = 106/236 (44.92%), Query Frame = 0 
Query:    2 KILFDEVQREMYGQAL--KLVNFAMNRWSSAKECLRRVLTDYKPILRIYHSRSRHTELRKVNQVILELYTLIRAVNIVLKDMQSNSPASGLCFVLGIAELLASELCLEQPLLVVNPAIEAGKEEPEDRGVDVEASGGDTES-NLPHNHTLVPVNELTEIGWESRRHLRAGIEKRFIRDRYLSTGDCVRASYVFDAAALAHPALCKLRHVDRMCDTPMSLGEVTGTLSTLVLASFLE 235
            K +F E Q   Y Q L  KLVN A  RWS     L   + +   I  +Y        L      I ELY+LI+ V  ++   Q     +G   VLG+A L  S   ++  L V+ P    G   PE  G      GG+ ++ ++P  H     N LT++G ++R HL + +++R+    Y S        +VFD     HP    L++VD++  T +    V  +++  ++A  +E
Sbjct:  225 KAIFQEEQVRHYSQCLHRKLVNVAPQRWSGVSGVLEATIVNRVGIDGVYAREGSVNPLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVRAQGW--PEGTG------GGERKATSVPRLH-----NHLTQVGRDAREHLASALDRRYFDRCYKSADSEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVE 447
The following BLAST results are available for this feature:
BLAST of NO07G00020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN76713.16.100e-1228.39hypothetical protein Esi_0000_0516 [Ectocarpus sil... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00020NO07G00020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00020.1NO07G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00020.1.cds1NO07G00020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00020.1 ID=NO07G00020.1|Name=NO07G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
ATGAAAATTTTGTTTGATGAGGTGCAGCGCGAGATGTATGGTCAGGCTTT
GAAGCTCGTCAATTTTGCGATGAATCGGTGGAGTTCTGCGAAGGAATGTT
TGCGACGAGTTTTGACGGATTACAAGCCCATTCTGAGGATTTATCATTCT
CGGAGCAGGCACACGGAGCTGAGGAAAGTGAACCAGGTCATACTTGAGCT
GTATACCTTGATCCGTGCGGTGAACATTGTGCTGAAGGATATGCAGAGCA
ATTCACCCGCATCGGGGCTCTGCTTCGTATTGGGCATTGCTGAGCTCCTT
GCGAGCGAGCTATGTTTGGAGCAGCCCCTGCTTGTGGTGAATCCTGCTAT
TGAGGCTGGGAAGGAGGAACCGGAGGATAGAGGGGTGGACGTTGAGGCCT
CGGGGGGAGACACTGAAAGCAACCTCCCGCACAACCACACGCTTGTTCCG
GTAAATGAGCTCACGGAGATAGGGTGGGAGAGTCGTAGACATCTACGTGC
GGGCATTGAGAAGCGTTTTATTCGTGACAGATACCTCTCGACGGGTGACT
GCGTCAGGGCCTCATATGTATTTGATGCCGCTGCTCTGGCGCACCCTGCA
CTGTGCAAACTACGACACGTGGATAGGATGTGTGACACGCCCATGTCGCT
CGGGGAGGTTACAGGAACGCTTTCTACTTTAGTGCTTGCAAGTTTTTTGG
AAAAACTCTATCCGCTCTTTTCACGTTTATAAAAATTCACAGGGCCATAA
TCGACACTATCTGTTGAGGGATCGGACTTCCTGGCACAGGTCGATAGTGA
GGTAATGCCCAAGACTCGATTCTCAAATCAAATATTATAACTTGGCCCCC
TTCGGATCCGTGCAACCGGCGTGCTAGCCGCAGTTGCTTGCACTTTTCCG
AGTCCCTAGAATCAGGGCTACAGGCTGGTATCACGGAGATGTCTGGATGA
GGTCTCTGTTGCACACAGGTTGCTTTTTCACTACAGGCCTCCTCATTAGC
TTGAAGAATGCATGGTCTCCAATAAGAGTCAGGAGTGCATATAAAACTGA
GCATGGGGAGAGATATTTCGCCTTGACAGCGGTACATTCTAAAGACCGAG
TTCACCGCCGGACTGTTTACCCGTTTTTCGGCCCAAAGGCATTCCTTCGT
TTAGCCCATTCGTTAGCCACTTTCCGTCCCTATCCTTCCCCCTCCCTCCT
GGACGCTCATCTACCACGAGTCGCTTTCTTGGTCCGCTCTCCAAAGTGCA
CTTGCCCTCAAGACCCCTTCGTGTCTGCTCACGTATCAATTCGCTGTTTT
TATTCTTTTGACAGAGTAGCCACGTACTTGTGTGCATTAACAAAGAGTAT
CAGCGTTTACTGGCTGTCTCCGGGCTAAAAGCTTGGTAGTAGGCTCAATA
TAAGGGGGG
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protein sequence of NO07G00020.1

>NO07G00020.1-protein ID=NO07G00020.1-protein|Name=NO07G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MKILFDEVQREMYGQALKLVNFAMNRWSSAKECLRRVLTDYKPILRIYHS
RSRHTELRKVNQVILELYTLIRAVNIVLKDMQSNSPASGLCFVLGIAELL
ASELCLEQPLLVVNPAIEAGKEEPEDRGVDVEASGGDTESNLPHNHTLVP
VNELTEIGWESRRHLRAGIEKRFIRDRYLSTGDCVRASYVFDAAALAHPA
LCKLRHVDRMCDTPMSLGEVTGTLSTLVLASFLEKLYPLFSRL*
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mRNA from alignment at chr7:6579..7987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00020.1 ID=NO07G00020.1|Name=NO07G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp|location=Sequence derived from alignment at chr7:6579..7987+ (Nannochloropsis oceanica)
ATGAAAATTTTGTTTGATGAGGTGCAGCGCGAGATGTATGGTCAGGCTTT
GAAGCTCGTCAATTTTGCGATGAATCGGTGGAGTTCTGCGAAGGAATGTT
TGCGACGAGTTTTGACGGATTACAAGCCCATTCTGAGGATTTATCATTCT
CGGAGCAGGCACACGGAGCTGAGGAAAGTGAACCAGGTCATACTTGAGCT
GTATACCTTGATCCGTGCGGTGAACATTGTGCTGAAGGATATGCAGAGCA
ATTCACCCGCATCGGGGCTCTGCTTCGTATTGGGCATTGCTGAGCTCCTT
GCGAGCGAGCTATGTTTGGAGCAGCCCCTGCTTGTGGTGAATCCTGCTAT
TGAGGCTGGGAAGGAGGAACCGGAGGATAGAGGGGTGGACGTTGAGGCCT
CGGGGGGAGACACTGAAAGCAACCTCCCGCACAACCACACGCTTGTTCCG
GTAAATGAGCTCACGGAGATAGGGTGGGAGAGTCGTAGACATCTACGTGC
GGGCATTGAGAAGCGTTTTATTCGTGACAGATACCTCTCGACGGGTGACT
GCGTCAGGGCCTCATATGTATTTGATGCCGCTGCTCTGGCGCACCCTGCA
CTGTGCAAACTACGACACGTGGATAGGATGTGTGACACGCCCATGTCGCT
CGGGGAGGTTACAGGAACGCTTTCTACTTTAGTGCTTGCAAGTTTTTTGG
AAAAACTCTATCCGCTCTTTTCACGTTTATAAAAATTCACAGGGCCATAA
TCGACACTATCTGTTGAGGGATCGGACTTCCTGGCACAGGTCGATAGTGA
GGTAATGCCCAAGACTCGATTCTCAAATCAAATATTATAACTTGGCCCCC
TTCGGATCCGTGCAACCGGCGTGCTAGCCGCAGTTGCTTGCACTTTTCCG
AGTCCCTAGAATCAGGGCTACAGGCTGGTATCACGGAGATGTCTGGATGA
GGTCTCTGTTGCACACAGGTTGCTTTTTCACTACAGGCCTCCTCATTAGC
TTGAAGAATGCATGGTCTCCAATAAGAGTCAGGAGTGCATATAAAACTGA
GCATGGGGAGAGATATTTCGCCTTGACAGCGGTACATTCTAAAGACCGAG
TTCACCGCCGGACTGTTTACCCGTTTTTCGGCCCAAAGGCATTCCTTCGT
TTAGCCCATTCGTTAGCCACTTTCCGTCCCTATCCTTCCCCCTCCCTCCT
GGACGCTCATCTACCACGAGTCGCTTTCTTGGTCCGCTCTCCAAAGTGCA
CTTGCCCTCAAGACCCCTTCGTGTCTGCTCACGTATCAATTCGCTGTTTT
TATTCTTTTGACAGAGTAGCCACGTACTTGTGTGCATTAACAAAGAGTAT
CAGCGTTTACTGGCTGTCTCCGGGCTAAAAGCTTGGTAGTAGGCTCAATA
TAAGGGGGG
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Coding sequence (CDS) from alignment at chr7:6579..7987+

>NO07G00020.1 ID=NO07G00020.1|Name=NO07G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr7:6579..7987+ (Nannochloropsis oceanica)
ATGAAAATTTTGTTTGATGAGGTGCAGCGCGAGATGTATGGTCAGGCTTT
GAAGCTCGTCAATTTTGCGATGAATCGGTGGAGTTCTGCGAAGGAATGTT
TGCGACGAGTTTTGACGGATTACAAGCCCATTCTGAGGATTTATCATTCT
CGGAGCAGGCACACGGAGCTGAGGAAAGTGAACCAGGTCATACTTGAGCT
GTATACCTTGATCCGTGCGGTGAACATTGTGCTGAAGGATATGCAGAGCA
ATTCACCCGCATCGGGGCTCTGCTTCGTATTGGGCATTGCTGAGCTCCTT
GCGAGCGAGCTATGTTTGGAGCAGCCCCTGCTTGTGGTGAATCCTGCTAT
TGAGGCTGGGAAGGAGGAACCGGAGGATAGAGGGGTGGACGTTGAGGCCT
CGGGGGGAGACACTGAAAGCAACCTCCCGCACAACCACACGCTTGTTCCG
GTAAATGAGCTCACGGAGATAGGGTGGGAGAGTCGTAGACATCTACGTGC
GGGCATTGAGAAGCGTTTTATTCGTGACAGATACCTCTCGACGGGTGACT
GCGTCAGGGCCTCATATGTATTTGATGCCGCTGCTCTGGCGCACCCTGCA
CTGTGCAAACTACGACACGTGGATAGGATGTGTGACACGCCCATGTCGCT
CGGGGAGGTTACAGGAACGCTTTCTACTTTAGTGCTTGCAAGTTTTTTGG
AAAAACTCTATCCGCTCTTTTCACGTTTATAA
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Synonyms
Publications