NO06G04670.1, NO06G04670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04670.1
Unique NameNO06G04670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length540
Alignment locationchr6:1342763..1343489 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1342763..1343489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G04670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04670NO06G04670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04670.1NO06G04670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04670.1.cds1NO06G04670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04670.1.cds2NO06G04670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04670.1 ID=NO06G04670.1|Name=NO06G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=540bp
ATGGGGCAGAACGACGGGATGACTGCGGTCAAGCAGCTGGGGGAGCTCAC
CATGTGCAGGAAGAATACGGACGGCATGCGCTCCTGGGCCTGCTACGACA
GGACGTGCCCGGAATGCAAGGACAAGTTGTACATCGAGGGTTGTCCTGTC
CAGCACAGCGAGAGCGGGATCACTAAGTGGTTCAAGAAGGTGAGGAAGGC
GATGGAAGCACGAGCAAGCGGCGCCGATGGAACAGTGGAGGGAGGGAACA
AGAGATGTGCTGGCTGGATGAGCAGTACACAGACGACTTTGCTGCCGGTT
GTGGTGTGGTTTCTGGCCCCGACGGGACGTGCCAGAAAGTTAAAGATGCA
GCAGCATTCCCGCGTGTACCTCAGCACGGACCGCCGGCACTCCAACAATT
TGGTGCAAAATATGCTGGACAATTCGTTGGCGCACCTCAAGGAGGTCACG
AGGGAGCCAGCGGCAGGGGTGGAGGAGTGTGCAATGCGGCGGCTCTCCGT
ATGGAGCGACTGGTGTAAGGGGCATTTTAAGAAAGGGTAG
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protein sequence of NO06G04670.1

>NO06G04670.1-protein ID=NO06G04670.1-protein|Name=NO06G04670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MGQNDGMTAVKQLGELTMCRKNTDGMRSWACYDRTCPECKDKLYIEGCPV
QHSESGITKWFKKVRKAMEARASGADGTVEGGNKRCAGWMSSTQTTLLPV
VVWFLAPTGRARKLKMQQHSRVYLSTDRRHSNNLVQNMLDNSLAHLKEVT
REPAAGVEECAMRRLSVWSDWCKGHFKKG*
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mRNA from alignment at chr6:1342763..1343489+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04670.1 ID=NO06G04670.1|Name=NO06G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=727bp|location=Sequence derived from alignment at chr6:1342763..1343489+ (Nannochloropsis oceanica)
ATGGGGCAGAACGACGGGATGACTGCGGTCAAGCAGCTGGGGGAGCTCAC
CATGTGCAGGAAGAATACGGACGGCATGCGCTCCTGGGCCTGCTACGACA
GGACGTGCCCGGAATGCAAGGACAAGTTGTACATCGAGGGTTGTCCTGTC
CAGCACAGCGAGAGCGGGATCACTAAGTGGTTCAAGAAGGTGAGGAAGGC
GATGGAAGCACGAGCAAGCGGCGCCGATGGAACAGTGGAGGGAGGGAACA
AGAGATGTGCTGGCTGGATGAGCAGTACACAGGTACTCTCCGGGAGTACA
TGGAGGAGATGCGGAGGGAGACTGCTCGATTCGGGAGGCACTGGCGCATG
CATGTGTCCCAACAAAAAGCCTACAAACGCATGGGGGAGGAAGATACAAT
GGTGCCGGGGAAGCTCTACACAATCATGGACTTTGCCATGAATTACTCGA
GTATTTTGCCGAGAATCAGACGACTTTGCTGCCGGTTGTGGTGTGGTTTC
TGGCCCCGACGGGACGTGCCAGAAAGTTAAAGATGCAGCAGCATTCCCGC
GTGTACCTCAGCACGGACCGCCGGCACTCCAACAATTTGGTGCAAAATAT
GCTGGACAATTCGTTGGCGCACCTCAAGGAGGTCACGAGGGAGCCAGCGG
CAGGGGTGGAGGAGTGTGCAATGCGGCGGCTCTCCGTATGGAGCGACTGG
TGTAAGGGGCATTTTAAGAAAGGGTAG
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Coding sequence (CDS) from alignment at chr6:1342763..1343489+

>NO06G04670.1 ID=NO06G04670.1|Name=NO06G04670.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr6:1342763..1343489+ (Nannochloropsis oceanica)
ATGGGGCAGAACGACGGGATGACTGCGGTCAAGCAGCTGGGGGAGCTCAC
CATGTGCAGGAAGAATACGGACGGCATGCGCTCCTGGGCCTGCTACGACA
GGACGTGCCCGGAATGCAAGGACAAGTTGTACATCGAGGGTTGTCCTGTC
CAGCACAGCGAGAGCGGGATCACTAAGTGGTTCAAGAAGGTGAGGAAGGC
GATGGAAGCACGAGCAAGCGGCGCCGATGGAACAGTGGAGGGAGGGAACA
AGAGATGTGCTGGCTGGATGAGCAGTACACAGACGACTTTGCTGCCGGTT
GTGGTGTGGTTTCTGGCCCCGACGGGACGTGCCAGAAAGTTAAAGATGCA
GCAGCATTCCCGCGTGTACCTCAGCACGGACCGCCGGCACTCCAACAATT
TGGTGCAAAATATGCTGGACAATTCGTTGGCGCACCTCAAGGAGGTCACG
AGGGAGCCAGCGGCAGGGGTGGAGGAGTGTGCAATGCGGCGGCTCTCCGT
ATGGAGCGACTGGTGTAAGGGGCATTTTAAGAAAGGGTAG
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Synonyms
Publications