NO06G04560.1, NO06G04560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04560.1
Unique NameNO06G04560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1218
Alignment locationchr6:1306275..1307767 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1306275..1307767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04560.1 vs.
Match: XP_023676506.1 (zinc finger BED domain-containing protein 1-like [Paramormyrops kingsleyae])

HSP 1 Score: 99.0 bits (245), Expect = 3.600e-17
Identity = 73/229 (31.88%), Postives = 109/229 (47.60%), Query Frame = 0 
Query:   98 LATDLHPAVQEVRQHMAQDMATRFHWD----ILRDTFAIASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKATTTLKDEGMYTDRAEQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVYQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 323
            +AT+  P V E +  + Q ++ R   D    ++     IAS LDPR K L  +   E        L  L  D     +++E M  +     AGGD                  +AV+AG + G        S+L        + ++   E+  Y++       + PLDWWR N+  FP LA+LA++YLC+P TS   ER FSAAGL ++ LRTRL+ + V+M++FL  N
Sbjct:  389 IATNDRPRVAEFKAKVQQSLSERMEVDYNERLVSMPAVIASALDPRHKHLP-FLSREKTKAVLDKLKELCADMEHAAIEEEDMGEEEEPGAAGGD----------------DDAAVTAGPSSGASHKENAMSLLLGDDYSAADATDPQMEVDTYVKDSRPSLESNPLDWWRANQTRFPRLARLAQRYLCIPGTSVPSERVFSAAGLVVNRLRTRLTPEHVDMLVFLNKN 600
The following BLAST results are available for this feature:
BLAST of NO06G04560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_023676506.13.600e-1731.88zinc finger BED domain-containing protein 1-like [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04560NO06G04560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04560.1NO06G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04560.1.cds1NO06G04560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04560.1.cds2NO06G04560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04560.1 ID=NO06G04560.1|Name=NO06G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp
ATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCAC
CAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCA
AGCGCGCCAAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAG
GAGAAATCCTTCGCGGACTTTGGCACAGCTGGGAAGGTGGTGCCTGCCAT
CTTCAAGCTACAGGCGCTCGTGACTGCTGACAAGGTGAAAGTAGTCACGC
CTAGGTCTGGGCCGAACCATCCCGGGTCGTCGGCCGAGGTGCTCGCCACG
GACCTCCACCCCGCCGTTCAGGAAGTCCGCCAGCATATGGCTCAAGACAT
GGCGACGCGCTTCCATTGGGACATTCTGCGGGACACCTTTGCAATCGCCT
CCCTGCTCGACCCCCGTTTCAAAAAGCTCGCCGATTACCATGTACCCGAG
CACCTCGTCAAGGATGCATGGGGGCTGCTTCGCCTAGAACTGGACAAGGC
CACTACGACGCTCAAGGATGAGGGCATGTACACCGACAGGGCGGAGCAGG
GCGCAGGGGGCGACATCGTCGTGGACAGCGGGGACCCTTTCGCCGCAGAG
AACACGGCCTCCAGGACGTCGGCAGTTTCTGCCGGTGACGCCCTTGGCAA
CGGTGCGGACGGTGTCCCTCGCTCCGTTTTGGGCACTGCAAGGGAGCAGC
TTCTTAACCTTTCCGAGGTGTACCAGGAGTTGGCCGATTACATCCGCATG
CCAGTCGAGCCTTCTAGCACCTGCCCACTGGACTGGTGGCGGTGCAACAA
GCGGTTCTTTCCCGCCCTGGCGAAGCTTGCTCGGCAGTATCTGTGCGTGC
CCGCAACCTCTGCCGGGGTGGAGCGGTTCTTTTCCGCTGCAGGCCTGACG
ATCAGCAACCTTCGGACGCGCCTCAGCAGCAAGACTGTCGAGATGATTCT
ATTCCTGCGGCTGAATTGGGACAACTCGCTGTACACGGTGGAGCTTGGGG
GCGCAGATCTCGAGGAGGTCACCCGAGCGGAAGAAGGGGGGGGAGGGGGG
GAAGGCGACGCGATGACAGATGCTGCGGACGAAGGGGAGGAGGGGGGAGA
TCTTCTGGATGACGATGAAGAAGGCGCCGCTCTTCAACCCATGGGCTTCG
GGGAGGACGATGACTTCGCTTGGCTCAATGAGGACCTCTTCTACGTCGAC
TTTGATATCGAAAGCTAA
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protein sequence of NO06G04560.1

>NO06G04560.1-protein ID=NO06G04560.1-protein|Name=NO06G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MSDMSSDEEGVAAASTTSSLAGSAREADARERGKRAKDLDIYPTAPRQDK
EKSFADFGTAGKVVPAIFKLQALVTADKVKVVTPRSGPNHPGSSAEVLAT
DLHPAVQEVRQHMAQDMATRFHWDILRDTFAIASLLDPRFKKLADYHVPE
HLVKDAWGLLRLELDKATTTLKDEGMYTDRAEQGAGGDIVVDSGDPFAAE
NTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVYQELADYIRM
PVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLT
ISNLRTRLSSKTVEMILFLRLNWDNSLYTVELGGADLEEVTRAEEGGGGG
EGDAMTDAADEGEEGGDLLDDDEEGAALQPMGFGEDDDFAWLNEDLFYVD
FDIES*
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mRNA from alignment at chr6:1306275..1307767+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04560.1 ID=NO06G04560.1|Name=NO06G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp|location=Sequence derived from alignment at chr6:1306275..1307767+ (Nannochloropsis oceanica)
ATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCAC
CAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCA
AGCGCGCCAAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAG
GAGAAATCCTTCGTGTGGCGTTCCGTCCACATCTAGACCATGATCAAGAA
GGTAAAGGCAGCTGTGAAGGCCGTCCGTCAAAGCCACTCCCAGACAGCTT
ATCTCAGGGAGGCACGAGTGGCAGCAGGCGTTTTCGACCACCAGCTTGTC
CAAGCTAACGCCACACGTTGGAGCTCTCTCGCGAATGCTTGTGATCGCTT
GCTGGAGCAGCGGCCCGCCCTCGAGTCGGCGTACGCGATCTCCTTGCCGT
GCTTGACCCCTTTCGGAAGTTCACCACGGTTCTTCAGGCGGACTTTGGCA
CAGCTGGGAAGGTGGTGCCTGCCATCTTCAAGCTACAGGCGCTCGTGACT
GCTGACAAGGTGAAAGTAGTCACGCCTAGGTCTGGGCCGAACCATCCCGG
GTCGTCGGCCGAGGTGCTCGCCACGGACCTCCACCCCGCCGTTCAGGAAG
TCCGCCAGCATATGGCTCAAGACATGGCGACGCGCTTCCATTGGGACATT
CTGCGGGACACCTTTGCAATCGCCTCCCTGCTCGACCCCCGTTTCAAAAA
GCTCGCCGATTACCATGTACCCGAGCACCTCGTCAAGGATGCATGGGGGC
TGCTTCGCCTAGAACTGGACAAGGCCACTACGACGCTCAAGGATGAGGGC
ATGTACACCGACAGGGCGGAGCAGGGCGCAGGGGGCGACATCGTCGTGGA
CAGCGGGGACCCTTTCGCCGCAGAGAACACGGCCTCCAGGACGTCGGCAG
TTTCTGCCGGTGACGCCCTTGGCAACGGTGCGGACGGTGTCCCTCGCTCC
GTTTTGGGCACTGCAAGGGAGCAGCTTCTTAACCTTTCCGAGGTGTACCA
GGAGTTGGCCGATTACATCCGCATGCCAGTCGAGCCTTCTAGCACCTGCC
CACTGGACTGGTGGCGGTGCAACAAGCGGTTCTTTCCCGCCCTGGCGAAG
CTTGCTCGGCAGTATCTGTGCGTGCCCGCAACCTCTGCCGGGGTGGAGCG
GTTCTTTTCCGCTGCAGGCCTGACGATCAGCAACCTTCGGACGCGCCTCA
GCAGCAAGACTGTCGAGATGATTCTATTCCTGCGGCTGAATTGGGACAAC
TCGCTGTACACGGTGGAGCTTGGGGGCGCAGATCTCGAGGAGGTCACCCG
AGCGGAAGAAGGGGGGGGAGGGGGGGAAGGCGACGCGATGACAGATGCTG
CGGACGAAGGGGAGGAGGGGGGAGATCTTCTGGATGACGATGAAGAAGGC
GCCGCTCTTCAACCCATGGGCTTCGGGGAGGACGATGACTTCGCTTGGCT
CAATGAGGACCTCTTCTACGTCGACTTTGATATCGAAAGCTAA
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Coding sequence (CDS) from alignment at chr6:1306275..1307767+

>NO06G04560.1 ID=NO06G04560.1|Name=NO06G04560.1|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr6:1306275..1307767+ (Nannochloropsis oceanica)
ATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCAC
CAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCA
AGCGCGCCAAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAG
GAGAAATCCTTCGCGGACTTTGGCACAGCTGGGAAGGTGGTGCCTGCCAT
CTTCAAGCTACAGGCGCTCGTGACTGCTGACAAGGTGAAAGTAGTCACGC
CTAGGTCTGGGCCGAACCATCCCGGGTCGTCGGCCGAGGTGCTCGCCACG
GACCTCCACCCCGCCGTTCAGGAAGTCCGCCAGCATATGGCTCAAGACAT
GGCGACGCGCTTCCATTGGGACATTCTGCGGGACACCTTTGCAATCGCCT
CCCTGCTCGACCCCCGTTTCAAAAAGCTCGCCGATTACCATGTACCCGAG
CACCTCGTCAAGGATGCATGGGGGCTGCTTCGCCTAGAACTGGACAAGGC
CACTACGACGCTCAAGGATGAGGGCATGTACACCGACAGGGCGGAGCAGG
GCGCAGGGGGCGACATCGTCGTGGACAGCGGGGACCCTTTCGCCGCAGAG
AACACGGCCTCCAGGACGTCGGCAGTTTCTGCCGGTGACGCCCTTGGCAA
CGGTGCGGACGGTGTCCCTCGCTCCGTTTTGGGCACTGCAAGGGAGCAGC
TTCTTAACCTTTCCGAGGTGTACCAGGAGTTGGCCGATTACATCCGCATG
CCAGTCGAGCCTTCTAGCACCTGCCCACTGGACTGGTGGCGGTGCAACAA
GCGGTTCTTTCCCGCCCTGGCGAAGCTTGCTCGGCAGTATCTGTGCGTGC
CCGCAACCTCTGCCGGGGTGGAGCGGTTCTTTTCCGCTGCAGGCCTGACG
ATCAGCAACCTTCGGACGCGCCTCAGCAGCAAGACTGTCGAGATGATTCT
ATTCCTGCGGCTGAATTGGGACAACTCGCTGTACACGGTGGAGCTTGGGG
GCGCAGATCTCGAGGAGGTCACCCGAGCGGAAGAAGGGGGGGGAGGGGGG
GAAGGCGACGCGATGACAGATGCTGCGGACGAAGGGGAGGAGGGGGGAGA
TCTTCTGGATGACGATGAAGAAGGCGCCGCTCTTCAACCCATGGGCTTCG
GGGAGGACGATGACTTCGCTTGGCTCAATGAGGACCTCTTCTACGTCGAC
TTTGATATCGAAAGCTAA
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Synonyms
Publications