NO06G04530.2, NO06G04530.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04530.2
Unique NameNO06G04530.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2754
Alignment locationchr6:1278395..1281802 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1278395..1281802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04530.2 vs.
Match: XP_005854675.1 (thioredoxin-1 [Nannochloropsis gaditana CCMP526]; EKU21682.1 thioredoxin-1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 162.9 bits (411), Expect = 7.300e-37
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 0 
Query:   15 LLLAICALVSSFYTAPARAAASAASLLPFHRQHKNKQQQHKSILARLSTTRGGVAGKVKEVQTLEETEAALSEAGSKLVVLDFTATWCGPCKLISPVFDALSEEISTNEAVFLKVDVDVNE 136
            L L + A  ++F+TAP  + +S ASLLP HRQ+K  +Q+ +S L RL+T RGGV+GKV EV+TLEETE AL+ AGSKLVVLDFTATWCGPCKLISPVF+ LSEEIS NEAVFLKVDVDVNE
Sbjct:    8 LFLIVIASTTAFHTAPWASPSSTASLLPLHRQYKQNEQRPQSALTRLATIRGGVSGKVSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNE 128
The following BLAST results are available for this feature:
BLAST of NO06G04530.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854675.17.300e-3770.25thioredoxin-1 [Nannochloropsis gaditana CCMP526]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04530NO06G04530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04530.2NO06G04530.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04530.2.cds1NO06G04530.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04530.2.cds2NO06G04530.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04530.2.cds3NO06G04530.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04530.2 ID=NO06G04530.2|Name=NO06G04530.2|organism=Nannochloropsis oceanica|type=mRNA|length=2754bp
TCCCCTCCATCACTTCCAGCCATGTACACACCGAGTCCAACCAGGCCAGA
GCCAATTCACGCGCCACACCCCACCGACCCACCCTCCCCAAGGGACTGAG
CTCCAAATCCTCATTCTTTATCCAGGTCTGCAGCCTTTGGCTCCGGTAGG
GAATGACGAGATCGAGAGTCCAGCGTGGGCAGACCCAGAGGCAGGCACGA
ATGAAGGGAGGGGAGGCGGTGTGGAAGACGCTGGCCAGAGACTCGACGAC
GGAGACAACGTCACGGTATAGGTACAGATGCTTGGAGGTAGAAGAGAGGG
AAAAGCTCGGAAACTCTTCCAAGGCAAGGTCGAGAAGATGGTGTCCCATG
CCCTTCATATTCAGGGAAATGATATGGGGGAGGGATTGCGAGGAGGAGGA
GGACGACGATGAAGAGGTGTGGGAGGGAGGACACTGGGACGCCTGACGAA
GCAATTGAGCATCGGTCAAGAGGCAGAGACGCAGAAGTCGGCGGAGAGTC
GCGTCTTTCACTTGTCGCCGGGCGCGTGCCCGACCAAGTTGCTCACACCA
GTAGGGCTCCGAGAGAGAGCAGACCCGGCCTGTGGTAAGTAGGAGGCGGT
GAAGAAGGGTAGAACCGCACCTCCCGGTATTCCAAACCCACAAAATATGT
TCCTTCTTGTCTTCTCCAACCTGTTGCTGCTGCTTTTCAGCTTCTTTCTG
CCGCAGGTAGTCCTCCACGGTATCAAATGATGCCACCAGCACGTGCTTCC
CCGCCAGGTGCCGTACACCTCGATCCATAAAGGGTTCCTCCAACAAATTC
GCCCCTGGCTCCATCTCCATGAACACCACACTTTGCGTCTCGAAATCCAG
GCAGTAAATAATAAAGGAAGATTTTGAAATCGAGGAGAACTCTGCCACAC
CATTCTCCTCCTTCATCTCTCCCACCGCCGCCTCCGCTTCGTCGAAAGTA
CCTTCCAAAAACTCGCGCAAGGGCTTGTAGTGGGCAGTGCGGGAGGTATT
CCGCTGGATAGCCTTGAGTCCACCCCACCACTCGTCTCCATTCCGGTAGA
CCCATGCCAAGGGGTAAAGCGCCGCGCCGCCGCTGGCTGGGGGACTAGGC
TTGAGGGATTGGCTTGGGTACCACTGGTGGAAGAGGAAGGCACCCATGAG
ACATAGGCCCAAGGACACCACGGGCGAGCAAATGAAGCTGGTACATTCTT
GCACTAGGGAAATGGAGAAGGGGAAGGGAAGCCCGAAGGAAAGCATTGCT
GCCTGCCTTGGTACCGTGGGGGGTAGGAGGTAGGATGAGCGGGTCGTCAT
TATTTGTAGGTACATATTACGCATGGGCGCGGGTGACATTCATGAAAAGA
CACAGATAGAATAATGACGAGGGACTCGTGCCACTTGAGCACTTAAAATT
TTCCACCGTGTCGTGTTGGAAGCGTGCACCAGAAGAGAGTGCATCGAGCT
GCTTGGCACGGTGATTGAGGGAGGTTGAGAAACATCGCTCGAGCAGACGC
GCTCGAGGCATCGCCTCTAAGCACTGCAAAATTTACTTGGTGTCTTCTTG
TTATCCGCAAGCCATTCATATGCCCGAGGTAGCCGTGCACAGTAATGTCG
GATCCGCAGCAGCAGCAGCAGGACACCAGTTGTATCTCCCCACTCTTGAT
CTCGGAGAGACCCAACACCCCCTCGGACTGTGACAACTTGGCCGCGTGCA
CCAAGCGCAGAGATTCTGATCACCCTCTTCCAACGTACACAATACTACTG
GCAGGTAAACCATGGCGCCATCCACTAGAACAAGTCGCCTCGTCATTCTC
TTCCTCCTCCTTGCTATCTGCGCCCTTGTCTCCTCCTTTTACACGGCCCC
TGCTCGCGCCGCGGCCTCGGCCGCCTCCCTTCTGCCCTTCCACCGGCAGC
ACAAGAACAAGCAACAGCAGCACAAGTCCATCTTAGCCCGTCTGTCCACG
ACGCGGGGAGGGGTGGCAGGAAAGGTGAAGGAGGTGCAGACATTGGAGGA
GACGGAGGCGGCGTTGAGCGAGGCGGGCAGCAAGCTGGTGGTGCTAGACT
TTACGGCGACATGGTGCGGCCCGTGCAAGCTCATCTCCCCCGTCTTTGAC
GCTCTGTCTGAAGAGATCTCCACCAACGAAGCTGTCTTTCTAAAGGTGGA
TGTGGACGTCAACGAGGTGATGAAGGGATGGGGAGGGAGGAATTGAGGGG
AGAGATGGCAAGAAGACTAGGACGGAGGGAGGGTGGTATCCGCGTAGTTA
TTCACAAAATTCTGCTCTCATTTTCCCTCCTACCCATATTTGTCCTTCAT
GTCTCATTACTGTCCTTTCTCCTCTTTTTCAAACTCGAACTAGGGCACGG
CTAGGAAGTTCGAGGTCTTCCAAATGCCGACTTTCGTGTTCGTCAAGGAC
GGGGAAGTGAAGGGCCGCTTGGTGGGCGCCAACCCTGACAAGCTCCGCGA
GGCGGTCTTCCGCTTTCTATGAGCAGAGGGAGAGGGGGGGGGGGAAGGGA
TAAGGAGCTCTGAAGAATGCGGAAAGAAGATGGCTTAAGAAAAGGGACGA
AGGAATGAAGGGGAGGTAGGGAGCCCTGAAGATTGGAGAGAGTTGATAAG
ATGAGGAGGCACATGGTCAAGTGATTTAGTCAGCGCATGCTGGCCCTGTC
CTATCCAAGCAAAGTAAGTGGGGCTGCAAACGTGATTGATGACGACGACG
AGTAAAACAAGCGTAGTAAAACAATAAAAGGCATGCCATTAGACGAAAGG
ATGT
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protein sequence of NO06G04530.2

>NO06G04530.2-protein ID=NO06G04530.2-protein|Name=NO06G04530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MAPSTRTSRLVILFLLLAICALVSSFYTAPARAAASAASLLPFHRQHKNK
QQQHKSILARLSTTRGGVAGKVKEVQTLEETEAALSEAGSKLVVLDFTAT
WCGPCKLISPVFDALSEEISTNEAVFLKVDVDVNEVMKGWGGRN*
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mRNA from alignment at chr6:1278395..1281802+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04530.2 ID=NO06G04530.2|Name=NO06G04530.2|organism=Nannochloropsis oceanica|type=mRNA|length=3408bp|location=Sequence derived from alignment at chr6:1278395..1281802+ (Nannochloropsis oceanica)
TCCCCTCCATCACTTCCAGCCATGTACACACCGAGTCCAACCAGGCCAGA
GCCAATTCACGCGCCACACCCCACCGACCCACCCTCCCCAAGGGACTGAG
CTCCAAATCCTCATTCTTTATCCAGGTCTGCAGCCTTTGGCTCCGGTAGG
GAATGACGAGATCGAGAGTCCAGCGTGGGCAGACCCAGAGGCAGGCACGA
ATGAAGGGAGGGGAGGCGGTGTGGAAGACGCTGGCCAGAGACTCGACGAC
GGAGACAACGTCACGGTATAGGTACAGATGCTTGGAGGTAGAAGAGAGGG
AAAAGCTCGGAAACTCTTCCAAGGCAAGGTCGAGAAGATGGTGTCCCATG
CCCTTCATATTCAGGGAAATGATATGGGGGAGGGATTGCGAGGAGGAGGA
GGACGACGATGAAGAGGTGTGGGAGGGAGGACACTGGGACGCCTGACGAA
GCAATTGAGCATCGGTCAAGAGGCAGAGACGCAGAAGTCGGCGGAGAGTC
GCGTCTTTCACTTGTCGCCGGGCGCGTGCCCGACCAAGTTGCTCACACCA
GTAGGGCTCCGAGAGAGAGCAGACCCGGCCTGTGGTAAGTAGGAGGCGGT
GAAGAAGGGTAGAACCGCACCTCCCGGTATTCCAAACCCACAAAATATGT
TCCTTCTTGTCTTCTCCAACCTGTTGCTGCTGCTTTTCAGCTTCTTTCTG
CCGCAGGTAGTCCTCCACGGTATCAAATGATGCCACCAGCACGTGCTTCC
CCGCCAGGTGCCGTACACCTCGATCCATAAAGGGTTCCTCCAACAAATTC
GCCCCTGGCTCCATCTCCATGAACACCACACTTTGCGTCTCGAAATCCAG
GCAGTAAATAATAAAGGAAGATTTTGAAATCGAGGAGAACTCTGCCACAC
CATTCTCCTCCTTCATCTCTCCCACCGCCGCCTCCGCTTCGTCGAAAGTA
CCTTCCAAAAACTCGCGCAAGGGCTTGTAGTGGGCAGTGCGGGAGGTATT
CCGCTGGATAGCCTTGAGTCCACCCCACCACTCGTCTCCATTCCGGTAGA
CCCATGCCAAGGGGTAAAGCGCCGCGCCGCCGCTGGCTGGGGGACTAGGC
TTGAGGGATTGGCTTGGGTACCACTGGTGGAAGAGGAAGGCACCCATGAG
ACATAGGCCCAAGGACACCACGGGCGAGCAAATGAAGCTGGTACATTCTT
GCACTAGGGAAATGGAGAAGGGGAAGGGAAGCCCGAAGGAAAGCATTGCT
GCCTGCCTTGGTACCGTGGGGGGTAGGAGGTAGGATGAGCGGGTCGTCAT
TATTTGTAGGTACATATTACGCATGGGCGCGGGTGACATTCATGAAAAGA
CACAGATAGAATAATGACGAGGGACTCGTGCCACTTGAGCACTTAAAATT
TTCCACCGTGTCGTGTTGGAAGCGTGCACCAGAAGAGAGTGCATCGAGCT
GCTTGGCACGGTGATTGAGGGAGGTTGAGAAACATCGCTCGAGCAGACGC
GCTCGAGGCATCGCCTCTAAGCACTGCAAAATTTACTTGGTGTCTTCTTG
TTATCCGCAAGCCATTCATATGCCCGAGGTAGCCGTGCACAGTAATGTCG
GATCCGCAGCAGCAGCAGCAGGACACCAGTTGTATCTCCCCACTCTTGAT
CTCGGAGAGACCCAACACCCCCTCGGACTGTGACAACTTGGCCGCGTGCA
CCAAGCGCAGAGATTCTGATCACCCTCTTCCAACGTACACAATACTACTG
GCAGGTAAACCATGGCGCCATCCACTAGAACAAGTCGCCTCGTCATTCTC
TTCCTCCTCCTTGCTATCTGCGCCCTTGTCTCCTCCTTTTACACGGCCCC
TGCTCGCGCCGCGGCCTCGGCCGCCTCCCTTCTGCCCTTCCACCGGCAGC
ACAAGAACAAGCAACAGCAGCACAAGTCCATCTTAGCCCGTCTGTCCACG
ACGCGGGGAGGGGTGGCAGGAAAGGTAGGGTGGCCTTTAGATCGTCGATG
GAAGGAGAAGGCTGCTGAGAACAAAAGGCGGGGAGGTCCAGATTAGGCAA
GCAGGGAGTAACAGTTGGAGGGTTGGAAAAGCGGTTATCTTTCGTTGGAA
AAGGAGTGAACCGTCATTTTTGGTCTCCAACACATCGTCTCTTTCATTTA
AACCCGTAAATTCCACACATAAAAATATTGAGGGGCGCTGCCGTCCTTAC
CATGCTCGCCGCATGCCCACCTATGCCCTCCCTCCCTGCTTTCTTTCTGT
CCCTGTTACTCAACTTTTTCGATAGGTGAAGGAGGTGCAGACATTGGAGG
AGACGGAGGCGGCGTTGAGCGAGGCGGGCAGCAAGCTGGTGGTGCTAGAC
TTTACGGCGACATGGTAAAGGGAAGAAGGGAGCGAGGGAGCGAGGGAGGA
TAGATAAGGGGAAGGGTATAAATCGCTTGGATTCAAAGGCAGAAGATGTG
AATGCACTCAACACTGGCATTCTTACTAAGTACCAGGGCAGTCAGCCCAA
ATCAGTAATCCTCGGGGCGTGTGACACCCATCATCTCGATATCTAAATGT
TTCCTTCCCTTCCCTCAATCCCTTCCCTCCCTCCTTACCCTCGCCAGGTG
CGGCCCGTGCAAGCTCATCTCCCCCGTCTTTGACGCTCTGTCTGAAGAGA
TCTCCACCAACGAAGCTGTCTTTCTAAAGGTGGATGTGGACGTCAACGAG
GTGATGAAGGGATGGGGAGGGAGGAATTGAGGGGAGAGATGGCAAGAAGA
CTAGGACGGAGGGAGGGTGGTATCCGCGTAGTTATTCACAAAATTCTGCT
CTCATTTTCCCTCCTACCCATATTTGTCCTTCATGTCTCATTACTGTCCT
TTCTCCTCTTTTTCAAACTCGAACTAGGGCACGGCTAGGAAGTTCGAGGT
CTTCCAAATGCCGGTACGTCAGCCCCTCTTCCTCCCTCCCTCCCTCCCTC
CAACCCTCAAGAAAAATTCTATTTCGATCGCACACACACTGCTCTTCTCC
TCTCCTTCTTTTTATCTATGCTCCCTACCCCAGACTTTCGTGTTCGTCAA
GGACGGGGAAGTGAAGGGCCGCTTGGTGGGCGCCAACCCTGACAAGCTCC
GCGAGGCGGTCTTCCGCTTTCTATGAGCAGAGGGAGAGGGGGGGGGGGAA
GGGATAAGGAGCTCTGAAGAATGCGGAAAGAAGATGGCTTAAGAAAAGGG
ACGAAGGAATGAAGGGGAGGTAGGGAGCCCTGAAGATTGGAGAGAGTTGA
TAAGATGAGGAGGCACATGGTCAAGTGATTTAGTCAGCGCATGCTGGCCC
TGTCCTATCCAAGCAAAGTAAGTGGGGCTGCAAACGTGATTGATGACGAC
GACGAGTAAAACAAGCGTAGTAAAACAATAAAAGGCATGCCATTAGACGA
AAGGATGT
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Coding sequence (CDS) from alignment at chr6:1278395..1281802+

>NO06G04530.2 ID=NO06G04530.2|Name=NO06G04530.2|organism=Nannochloropsis oceanica|type=CDS|length=435bp|location=Sequence derived from alignment at chr6:1278395..1281802+ (Nannochloropsis oceanica)
ATGGCGCCATCCACTAGAACAAGTCGCCTCGTCATTCTCTTCCTCCTCCT
TGCTATCTGCGCCCTTGTCTCCTCCTTTTACACGGCCCCTGCTCGCGCCG
CGGCCTCGGCCGCCTCCCTTCTGCCCTTCCACCGGCAGCACAAGAACAAG
CAACAGCAGCACAAGTCCATCTTAGCCCGTCTGTCCACGACGCGGGGAGG
GGTGGCAGGAAAGGTGAAGGAGGTGCAGACATTGGAGGAGACGGAGGCGG
CGTTGAGCGAGGCGGGCAGCAAGCTGGTGGTGCTAGACTTTACGGCGACA
TGGTGCGGCCCGTGCAAGCTCATCTCCCCCGTCTTTGACGCTCTGTCTGA
AGAGATCTCCACCAACGAAGCTGTCTTTCTAAAGGTGGATGTGGACGTCA
ACGAGGTGATGAAGGGATGGGGAGGGAGGAATTGA
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Synonyms
Publications