NO06G04480.2, NO06G04480.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04480.2
Unique NameNO06G04480.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1843
Alignment locationchr6:1265279..1268340 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1265279..1268340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G04480.2 vs.
Match: EWM26435.1 (glycosyl transferase family 1 protein [Nannochloropsis gaditana])

HSP 1 Score: 542.0 bits (1395), Expect = 1.500e-150
Identity = 256/356 (71.91%), Postives = 305/356 (85.67%), Query Frame = 0
Query:    1 MQHAAQTRPPIKESIIVCHSEPGAWYPPRYHTSRCPPSDALYRIGRTMFETDRLPSGWAERMSEDKMDEIWVPTAFHKQIFVDGGVDAERLQVVGEPIDTDFFSPRNPALQAFLSSSSSSPRSPLLPFVTPSSFLYLSVFKFEERKGYDVLLRAYFEAFERGEDDVALLLLTNAYHGSEDFESPVRDIARKFFPDKLYPQDLPPVHIMSGVDALHLVALYQAADVFVLPSRGEGWGRPHVEAMAMEIPIIATNWSGPSEYMTSTNSYPLRTDGLVEIQDGPFKGHKWAEPSISHLVSLLRYTLTHQEEGRERGREARRDMQARYSLGAMGKELRRHLDRIEKRVEGREGRRAEKGK 357
            ++HAA  RPP++ESI++CHSEPGAW+P RY TSRCPP  ALYR+GRTMFETDRLPSGWAERMS DKMDEIWVPTAF K++FV+GGV+AER+QVVGEPIDTDFFSP NPAL   LS   SS   P LP   PSSFLYLS+FKFEERKG+D+LLRAYFEAF   E+DVALLLLTNAYH S+DFE+PV+ IA+++FP+K YP++LP VHIMSG  AL L+ALYQAADVFVLPSRGEGWGRPHVEAMAM  P+IATNWSGP+E+MT  NSYPL  +GL E+++GPFKGH+WA PS+SHL+SLL+YT +HQEEGRE+G+EARRDM  R+S   MG+E+RRHL+RIE++V  REG R ++ K
Sbjct:  119 LRHAADARPPLEESIVICHSEPGAWHPSRYPTSRCPPRKALYRVGRTMFETDRLPSGWAERMSRDKMDEIWVPTAFQKRVFVEGGVEAERIQVVGEPIDTDFFSPENPAL---LSLPQSSGLPPSLP---PSSFLYLSIFKFEERKGFDLLLRAYFEAFAPEEEDVALLLLTNAYHSSDDFETPVKAIAKEYFPEKKYPEELPAVHIMSGATALQLLALYQAADVFVLPSRGEGWGRPHVEAMAMAKPVIATNWSGPTEFMTPANSYPLHVEGLEEVRNGPFKGHRWASPSLSHLISLLQYTFSHQEEGREKGKEARRDMLRRFSPEVMGEEVRRHLERIEEQVRMREGERRKESK 468          
The following BLAST results are available for this feature:
BLAST of NO06G04480.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26435.11.500e-15071.91glycosyl transferase family 1 protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04480NO06G04480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04480.2NO06G04480.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04480.2.cds1NO06G04480.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04480.2.cds2NO06G04480.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04480.2.cds3NO06G04480.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04480.2.cds4NO06G04480.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04480.2.cds5NO06G04480.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04480.2.cds6NO06G04480.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04480.2.cds7NO06G04480.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04480.2.cds8NO06G04480.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04480.2 ID=NO06G04480.2|Name=NO06G04480.2|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp
AAAAGTCAAGATTGCTGGCTATTGGGGGCTGCATCCTTGCTGATGGTGCT
CCTTGGTCTCTGCCTTCTTTTCGGTTTCTTCCCCGTGGCCGCCTCCCTGC
CACCTGTGTACTGGTTCGCACCCTTCTACTCGGGCGGTGGCTACTGCAGC
GAGGTGTGGCCACCTCTTTCCCCTTCCGCCTCCCCTTCCTCTCTTCCTGC
ACCTACAACTGCACCTCACCCGCTTCTCCTTTCCTTGTCCCGTGCTTACT
CTATTTTTGATAGGCGATTGGATTTCTTCAGGCACTGACCTTGCAAAATG
TATCGGTGCTCATCGAGCACGTATGGATGGGAGGGTGGGAGGAAGGAATG
ATATGATGGGAGTGGGGAGGAAGTGAAGAAATTAATCTGCTCAAACTCTC
CCTTCTTCGTCTTTCCACTGCGCGAACAGCACGGCGACAGCATCAACTAC
GCCTTTTTACAAGGCCTGCCTCTCGAGATAAAACAGCTTATGCAGCACGC
CGCACAGACAAGGCCACCCATCAAGGAAAGCATCATCGTCTGTCATTCCG
AGCCGGGGGCTTGGTACCCTCCCCGCTATCACACGTCACGGTGTCCGCCG
AGCGACGCCCTCTACCGCATCGGCCGCACCATGTTCGAGACGGACCGCCT
GCCCTCGGGCTGGGCAGAGAGGATGAGCGAGGACAAGATGGACGAAATCT
GGGTCCCGACGGCCTTTCACAAGCAGATCTTCGTTGACGGAGGCGTAGAT
GCTGAGCGGTTGCAGGTGGTTGGCGAGCCGATCGATACCGACTTCTTCTC
CCCTCGCAACCCCGCCCTCCAAGCCTTCCTCTCCTCTTCCTCCTCTTCCC
CCCGCTCCCCCCTCCTGCCTTTTGTCACTCCGTCCTCCTTCCTGTACCTC
TCTGTTTTTAAGTTCGAGGAGAGGAAGGGCTATGACGTGCTGCTTAGGGC
ATATTTTGAGGCGTTTGAGCGAGGGGAGGATGATGTGGCTCTGCTGCTCC
TGACAAATGCTTACCATGGCTCGGAAGACTTTGAGTCTCCGGTCCGAGAC
ATCGCCAGAAAGTTCTTCCCCGACAAGCTTTACCCCCAGGACCTGCCGCC
GGTCCACATAATGAGTGGCGTGGACGCCCTCCACCTCGTGGCACTCTACC
AGGCCGCGGACGTTTTCGTGCTCCCTAGCCGAGGCGAGGGGTGGGGCCGA
CCGCACGTGGAGGCCATGGCCATGGAGATCCCCATCATCGCCACCAACTG
GTCCGGCCCCTCTGAATATATGACCTCCACCAACAGCTACCCCCTCCGCA
CAGACGGCCTTGTCGAGATCCAGGACGGGCCCTTCAAGGGTCACAAGTGG
GCGGAGCCCTCTATCTCGCACCTAGTCTCCCTCCTCCGTTACACCCTTAC
CCACCAGGAGGAGGGAAGGGAGCGAGGGAGGGAGGCCCGGAGGGACATGC
AGGCTCGTTATTCCCTTGGGGCCATGGGGAAGGAGCTGAGAAGGCACTTG
GACAGGATCGAGAAGAGGGTGGAGGGGAGGGAGGGACGGAGGGCGGAGAA
GGGGAAGACAAAGGGGGGAGGGGAGGAGTTGTAGGGGGGGAACAGAGGAA
AGAGATAATGAGGGAGTCAGGAGACGGGAGAAAATGGTGTTGCGGTGAGA
GAGGCTTCGGGAGAAGCCAGGACGATAGCTGAATGTGTGAGCTGTGTATA
ATTGCATTAATGCCTGTGTGAATGCGCCCGCGTCTCAGGCATGTGACTGC
TTGAAAGTAACAACCACAACTGAGTGGCAGAAGAGGAAGAGCGATGAGTT
ACAGAAAGTAGCCAAAGTAATCAAAGACCCTCCCGATTGCGTA
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protein sequence of NO06G04480.2

>NO06G04480.2-protein ID=NO06G04480.2-protein|Name=NO06G04480.2|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MQHAAQTRPPIKESIIVCHSEPGAWYPPRYHTSRCPPSDALYRIGRTMFE
TDRLPSGWAERMSEDKMDEIWVPTAFHKQIFVDGGVDAERLQVVGEPIDT
DFFSPRNPALQAFLSSSSSSPRSPLLPFVTPSSFLYLSVFKFEERKGYDV
LLRAYFEAFERGEDDVALLLLTNAYHGSEDFESPVRDIARKFFPDKLYPQ
DLPPVHIMSGVDALHLVALYQAADVFVLPSRGEGWGRPHVEAMAMEIPII
ATNWSGPSEYMTSTNSYPLRTDGLVEIQDGPFKGHKWAEPSISHLVSLLR
YTLTHQEEGRERGREARRDMQARYSLGAMGKELRRHLDRIEKRVEGREGR
RAEKGKTKGGGEEL*
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mRNA from alignment at chr6:1265279..1268340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04480.2 ID=NO06G04480.2|Name=NO06G04480.2|organism=Nannochloropsis oceanica|type=mRNA|length=3062bp|location=Sequence derived from alignment at chr6:1265279..1268340+ (Nannochloropsis oceanica)
AAAAGTCAAGATTGCTGGCTATTGGGGGCTGCATCCTTGCTGATGGTGCT CCTTGGTACGTCCTGTCGGTCCCTTCTCCTCCGTTTCATTCCACTCCTCA TGCCCACTCTACCCGCAGGTCTCTGCCTTCTTTTCGGTTTCTTCCCCGTG GCCGCCTCCCTGCCACCTGTGTACTGGTTCGCACCCTTCTACTCGGGCGG TGGCTACTGCAGCGAGGTGTGGCCACCTCTTTCCCCTTCCGCCTCCCCTT CCTCTCTTCCTGCACCTACAACTGCACCTCACCCGCTTCTCCTTTCCTTG TCCCGTGCTTACTCTATTTTTGATAGGCGATTGGATTTCTTCAGGCACTG ACCTTGCAAAATGTATCGGTGCTCATCGAGCACGTATGGATGGGAGGGTG GGAGGAAGGAATGATATGATGGGAGTGGGGAGGAAGTGAAGAAATTAATC TGCTCAAACTCTCCCTTCTTCGTCTTTCCACTGCGCGAACAGCACGGCGA CAGCATCAACTACGCCTTTTTACAAGGCCTGCCTCTCGAGATAAAACAGG TAGGGACTCACATCTCTATCTTTTCCCATTCATTCCTTCCGTTGACTCGC ACCCTCCTACTCTCTCTTCCTCCCTCCCTTCCTGTCCCAGCTTATGCAGC ACGCCGCACAGACAAGGCCACCCATCAAGGAAAGCATCATCGTCTGTCAT TCCGAGCCGGGGGCTTGGTACCCTCCCCGCTATCACACGTCACGGTGTCC GCCGAGGTAGGGGAGCAGGGAGGGAGGGGGAGGGAGGGAAGGGCGGGGTC GGATTCGCAGCATTGGTACATCGAGATGTATGGAAGCATTTTTCATTTTC CTTCAATTTAAGTTGGGAATTGGACCCCCTTCTTGATCTGTTCGTTTACT CACACGAATCTTAATAAGCCACTTTCTTCCTCTCCATTCCCATCTCCATC CCTCCCTCCCTCGTCAGCGACGCCCTCTACCGCATCGGCCGCACCATGTT CGAGACGGACCGCCTGCCCTCGGGCTGGGCAGAGAGGATGAGCGAGGACA AGATGGACGAAAGTGAGCCCCAAGGCGGGATGAAGGGGGGAAAGAAGAGA GAGAGCATGCGCGGTGTTGCCTCCCATGTTCTCACTGCCAGTGAACCTCC TCCTCCTCCTCATCCTCCTCCTCTTCCTCTTCCTCTTTGTATGTTCTCTT CCCAGTCTGGGTCCCGACGGCCTTTCACAAGCAGATCTTCGTTGACGGAG GCGTAGATGCTGAGCGGTTGCAGGTACATACAGGTCATCCCTTTCCCCTT CTCCCTTCCTCCTCTCCTTCCCCCAATGCCGACTCGGCCCATTTATGAAT CTACCCCCTTTTCCCTCCCTCCCTCCCTCATTCCTTCCCGCAGGTGGTTG GCGAGCCGATCGATACCGACTTCTTCTCCCCTCGCAACCCCGCCCTCCAA GCCTTCCTCTCCTCTTCCTCCTCTTCCCCCCGCTCCCCCCTCCTGCCTTT TGTCACTCCGTCCTCCTTCCTGTACCTCTCTGTTTTTAAGTTCGAGGAGA GGAAGGGCTATGACGTGCTGCTTAGGGCATATTTTGAGGCGTTTGAGCGA GGGGAGGATGATGTGGCTCTGCTGCTCCTGACAAATGCTTACCATGGGTA GGAACGGGAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG AGGGAGCGCTGAGTTATTCTGCTTGCATGGGCCTGTCGGTCCGCTGGAGC GTCAATCCCCGCCTCCCGTTGACGCACTCTTCTCACCCTTCCCCCTCTTC CCTCCTCCTCACATACCTCCTCCCCCTCAGCTCGGAAGACTTTGAGTCTC CGGTCCGAGACATCGCCAGAAAGTTCTTCCCCGACAAGCTTTACCCCCAG GACCTGCCGCCGGTCCACATAATGAGTGGCGTGGACGGTAAGGAGGGAAG GAGGGAGGGAGGGAGGGAAGGAAGGAGGAGTCATAGTCGATGCTTAGCCT TGGGCTGCCAAGCCCCCGTCTGTCTGTGTCGTGAGTGCCGTTATGGGAGG AATGGCGGGACGGAGGGAGGGGAGGACGACACGCCCGTCATCATCCTCAC CTACTCCTCCTTCCCCTTCTAGCCCTCCACCTCGTGGCACTCTACCAGGC CGCGGACGTTTTCGTGCTCCCTAGCCGAGGCGAGGGGTGGGGCCGACCGC ACGTGGAGGCCATGGCCATGGAGATCCCCATCATCGCCACCAACTGGTCC GGTGCGTGCCCCCTCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCT TTCGACTTCTGCATCGCATATCCAGTCTTCTCACCCGCCCTCCCTCCCTT CTCGTCCTCCCTAGGCCCCTCTGAATATATGACCTCCACCAACAGCTACC CCCTCCGCACAGACGGCCTTGTCGAGATCCAGGACGGGCCCTTCAAGGTA CGTCTCCCTCCTTCCCGCCCTCCCTCCCTCCCTCCCGCCCGCCCTCCCTC GTCTTCATACCTGACTCTCCGTCCGTCTCCCTCCTCCTCCCCCTCCCTCC CTTGAAGGGTCACAAGTGGGCGGAGCCCTCTATCTCGCACCTAGTCTCCC TCCTCCGTTACACCCTTACCCACCAGGAGGAGGGAAGGGAGCGAGGGAGG GAGGCCCGGAGGGACATGCAGGCTCGTTATTCCCTTGGGGCCATGGGGAA GGAGCTGAGAAGGCACTTGGACAGGATCGAGAAGAGGGTGGAGGGGAGGG AGGGACGGAGGGCGGAGAAGGGGAAGACAAAGGGGGGAGGGGAGGAGTTG TAGGGGGGGAACAGAGGAAAGAGATAATGAGGGAGTCAGGAGACGGGAGA AAATGGTGTTGCGGTGAGAGAGGCTTCGGGAGAAGCCAGGACGATAGCTG AATGTGTGAGCTGTGTATAATTGCATTAATGCCTGTGTGAATGCGCCCGC GTCTCAGGCATGTGACTGCTTGAAAGTAACAACCACAACTGAGTGGCAGA AGAGGAAGAGCGATGAGTTACAGAAAGTAGCCAAAGTAATCAAAGACCCT CCCGATTGCGTA
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Coding sequence (CDS) from alignment at chr6:1265279..1268340+

>NO06G04480.2 ID=NO06G04480.2|Name=NO06G04480.2|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr6:1265279..1268340+ (Nannochloropsis oceanica)
ATGCAGCACGCCGCACAGACAAGGCCACCCATCAAGGAAAGCATCATCGT
CTGTCATTCCGAGCCGGGGGCTTGGTACCCTCCCCGCTATCACACGTCAC
GGTGTCCGCCGAGCGACGCCCTCTACCGCATCGGCCGCACCATGTTCGAG
ACGGACCGCCTGCCCTCGGGCTGGGCAGAGAGGATGAGCGAGGACAAGAT
GGACGAAATCTGGGTCCCGACGGCCTTTCACAAGCAGATCTTCGTTGACG
GAGGCGTAGATGCTGAGCGGTTGCAGGTGGTTGGCGAGCCGATCGATACC
GACTTCTTCTCCCCTCGCAACCCCGCCCTCCAAGCCTTCCTCTCCTCTTC
CTCCTCTTCCCCCCGCTCCCCCCTCCTGCCTTTTGTCACTCCGTCCTCCT
TCCTGTACCTCTCTGTTTTTAAGTTCGAGGAGAGGAAGGGCTATGACGTG
CTGCTTAGGGCATATTTTGAGGCGTTTGAGCGAGGGGAGGATGATGTGGC
TCTGCTGCTCCTGACAAATGCTTACCATGGCTCGGAAGACTTTGAGTCTC
CGGTCCGAGACATCGCCAGAAAGTTCTTCCCCGACAAGCTTTACCCCCAG
GACCTGCCGCCGGTCCACATAATGAGTGGCGTGGACGCCCTCCACCTCGT
GGCACTCTACCAGGCCGCGGACGTTTTCGTGCTCCCTAGCCGAGGCGAGG
GGTGGGGCCGACCGCACGTGGAGGCCATGGCCATGGAGATCCCCATCATC
GCCACCAACTGGTCCGGCCCCTCTGAATATATGACCTCCACCAACAGCTA
CCCCCTCCGCACAGACGGCCTTGTCGAGATCCAGGACGGGCCCTTCAAGG
GTCACAAGTGGGCGGAGCCCTCTATCTCGCACCTAGTCTCCCTCCTCCGT
TACACCCTTACCCACCAGGAGGAGGGAAGGGAGCGAGGGAGGGAGGCCCG
GAGGGACATGCAGGCTCGTTATTCCCTTGGGGCCATGGGGAAGGAGCTGA
GAAGGCACTTGGACAGGATCGAGAAGAGGGTGGAGGGGAGGGAGGGACGG
AGGGCGGAGAAGGGGAAGACAAAGGGGGGAGGGGAGGAGTTGTAG
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Synonyms
Publications