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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1265279..1268340 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04480.2 vs.
Match: EWM26435.1 (glycosyl transferase family 1 protein [Nannochloropsis gaditana]) HSP 1 Score: 542.0 bits (1395), Expect = 1.500e-150 Identity = 256/356 (71.91%), Postives = 305/356 (85.67%), Query Frame = 0
Query: 1 MQHAAQTRPPIKESIIVCHSEPGAWYPPRYHTSRCPPSDALYRIGRTMFETDRLPSGWAERMSEDKMDEIWVPTAFHKQIFVDGGVDAERLQVVGEPIDTDFFSPRNPALQAFLSSSSSSPRSPLLPFVTPSSFLYLSVFKFEERKGYDVLLRAYFEAFERGEDDVALLLLTNAYHGSEDFESPVRDIARKFFPDKLYPQDLPPVHIMSGVDALHLVALYQAADVFVLPSRGEGWGRPHVEAMAMEIPIIATNWSGPSEYMTSTNSYPLRTDGLVEIQDGPFKGHKWAEPSISHLVSLLRYTLTHQEEGRERGREARRDMQARYSLGAMGKELRRHLDRIEKRVEGREGRRAEKGK 357
++HAA RPP++ESI++CHSEPGAW+P RY TSRCPP ALYR+GRTMFETDRLPSGWAERMS DKMDEIWVPTAF K++FV+GGV+AER+QVVGEPIDTDFFSP NPAL LS SS P LP PSSFLYLS+FKFEERKG+D+LLRAYFEAF E+DVALLLLTNAYH S+DFE+PV+ IA+++FP+K YP++LP VHIMSG AL L+ALYQAADVFVLPSRGEGWGRPHVEAMAM P+IATNWSGP+E+MT NSYPL +GL E+++GPFKGH+WA PS+SHL+SLL+YT +HQEEGRE+G+EARRDM R+S MG+E+RRHL+RIE++V REG R ++ K
Sbjct: 119 LRHAADARPPLEESIVICHSEPGAWHPSRYPTSRCPPRKALYRVGRTMFETDRLPSGWAERMSRDKMDEIWVPTAFQKRVFVEGGVEAERIQVVGEPIDTDFFSPENPAL---LSLPQSSGLPPSLP---PSSFLYLSIFKFEERKGFDLLLRAYFEAFAPEEEDVALLLLTNAYHSSDDFETPVKAIAKEYFPEKKYPEELPAVHIMSGATALQLLALYQAADVFVLPSRGEGWGRPHVEAMAMAKPVIATNWSGPTEFMTPANSYPLHVEGLEEVRNGPFKGHRWASPSLSHLISLLQYTFSHQEEGREKGKEARRDMLRRFSPEVMGEEVRRHLERIEEQVRMREGERRKESK 468
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04480.2 ID=NO06G04480.2|Name=NO06G04480.2|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp AAAAGTCAAGATTGCTGGCTATTGGGGGCTGCATCCTTGCTGATGGTGCT CCTTGGTCTCTGCCTTCTTTTCGGTTTCTTCCCCGTGGCCGCCTCCCTGC CACCTGTGTACTGGTTCGCACCCTTCTACTCGGGCGGTGGCTACTGCAGC GAGGTGTGGCCACCTCTTTCCCCTTCCGCCTCCCCTTCCTCTCTTCCTGC ACCTACAACTGCACCTCACCCGCTTCTCCTTTCCTTGTCCCGTGCTTACT CTATTTTTGATAGGCGATTGGATTTCTTCAGGCACTGACCTTGCAAAATG TATCGGTGCTCATCGAGCACGTATGGATGGGAGGGTGGGAGGAAGGAATG ATATGATGGGAGTGGGGAGGAAGTGAAGAAATTAATCTGCTCAAACTCTC CCTTCTTCGTCTTTCCACTGCGCGAACAGCACGGCGACAGCATCAACTAC GCCTTTTTACAAGGCCTGCCTCTCGAGATAAAACAGCTTATGCAGCACGC CGCACAGACAAGGCCACCCATCAAGGAAAGCATCATCGTCTGTCATTCCG AGCCGGGGGCTTGGTACCCTCCCCGCTATCACACGTCACGGTGTCCGCCG AGCGACGCCCTCTACCGCATCGGCCGCACCATGTTCGAGACGGACCGCCT GCCCTCGGGCTGGGCAGAGAGGATGAGCGAGGACAAGATGGACGAAATCT GGGTCCCGACGGCCTTTCACAAGCAGATCTTCGTTGACGGAGGCGTAGAT GCTGAGCGGTTGCAGGTGGTTGGCGAGCCGATCGATACCGACTTCTTCTC CCCTCGCAACCCCGCCCTCCAAGCCTTCCTCTCCTCTTCCTCCTCTTCCC CCCGCTCCCCCCTCCTGCCTTTTGTCACTCCGTCCTCCTTCCTGTACCTC TCTGTTTTTAAGTTCGAGGAGAGGAAGGGCTATGACGTGCTGCTTAGGGC ATATTTTGAGGCGTTTGAGCGAGGGGAGGATGATGTGGCTCTGCTGCTCC TGACAAATGCTTACCATGGCTCGGAAGACTTTGAGTCTCCGGTCCGAGAC ATCGCCAGAAAGTTCTTCCCCGACAAGCTTTACCCCCAGGACCTGCCGCC GGTCCACATAATGAGTGGCGTGGACGCCCTCCACCTCGTGGCACTCTACC AGGCCGCGGACGTTTTCGTGCTCCCTAGCCGAGGCGAGGGGTGGGGCCGA CCGCACGTGGAGGCCATGGCCATGGAGATCCCCATCATCGCCACCAACTG GTCCGGCCCCTCTGAATATATGACCTCCACCAACAGCTACCCCCTCCGCA CAGACGGCCTTGTCGAGATCCAGGACGGGCCCTTCAAGGGTCACAAGTGG GCGGAGCCCTCTATCTCGCACCTAGTCTCCCTCCTCCGTTACACCCTTAC CCACCAGGAGGAGGGAAGGGAGCGAGGGAGGGAGGCCCGGAGGGACATGC AGGCTCGTTATTCCCTTGGGGCCATGGGGAAGGAGCTGAGAAGGCACTTG GACAGGATCGAGAAGAGGGTGGAGGGGAGGGAGGGACGGAGGGCGGAGAA GGGGAAGACAAAGGGGGGAGGGGAGGAGTTGTAGGGGGGGAACAGAGGAA AGAGATAATGAGGGAGTCAGGAGACGGGAGAAAATGGTGTTGCGGTGAGA GAGGCTTCGGGAGAAGCCAGGACGATAGCTGAATGTGTGAGCTGTGTATA ATTGCATTAATGCCTGTGTGAATGCGCCCGCGTCTCAGGCATGTGACTGC TTGAAAGTAACAACCACAACTGAGTGGCAGAAGAGGAAGAGCGATGAGTT ACAGAAAGTAGCCAAAGTAATCAAAGACCCTCCCGATTGCGTA back to topprotein sequence of NO06G04480.2 >NO06G04480.2-protein ID=NO06G04480.2-protein|Name=NO06G04480.2|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp MQHAAQTRPPIKESIIVCHSEPGAWYPPRYHTSRCPPSDALYRIGRTMFE TDRLPSGWAERMSEDKMDEIWVPTAFHKQIFVDGGVDAERLQVVGEPIDT DFFSPRNPALQAFLSSSSSSPRSPLLPFVTPSSFLYLSVFKFEERKGYDV LLRAYFEAFERGEDDVALLLLTNAYHGSEDFESPVRDIARKFFPDKLYPQ DLPPVHIMSGVDALHLVALYQAADVFVLPSRGEGWGRPHVEAMAMEIPII ATNWSGPSEYMTSTNSYPLRTDGLVEIQDGPFKGHKWAEPSISHLVSLLR YTLTHQEEGRERGREARRDMQARYSLGAMGKELRRHLDRIEKRVEGREGR RAEKGKTKGGGEEL* back to topmRNA from alignment at chr6:1265279..1268340+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04480.2 ID=NO06G04480.2|Name=NO06G04480.2|organism=Nannochloropsis oceanica|type=mRNA|length=3062bp|location=Sequence derived from alignment at chr6:1265279..1268340+ (Nannochloropsis oceanica) AAAAGTCAAGATTGCTGGCTATTGGGGGCTGCATCCTTGCTGATGGTGCT
CCTTGGTACGTCCTGTCGGTCCCTTCTCCTCCGTTTCATTCCACTCCTCA
TGCCCACTCTACCCGCAGGTCTCTGCCTTCTTTTCGGTTTCTTCCCCGTG
GCCGCCTCCCTGCCACCTGTGTACTGGTTCGCACCCTTCTACTCGGGCGG
TGGCTACTGCAGCGAGGTGTGGCCACCTCTTTCCCCTTCCGCCTCCCCTT
CCTCTCTTCCTGCACCTACAACTGCACCTCACCCGCTTCTCCTTTCCTTG
TCCCGTGCTTACTCTATTTTTGATAGGCGATTGGATTTCTTCAGGCACTG
ACCTTGCAAAATGTATCGGTGCTCATCGAGCACGTATGGATGGGAGGGTG
GGAGGAAGGAATGATATGATGGGAGTGGGGAGGAAGTGAAGAAATTAATC
TGCTCAAACTCTCCCTTCTTCGTCTTTCCACTGCGCGAACAGCACGGCGA
CAGCATCAACTACGCCTTTTTACAAGGCCTGCCTCTCGAGATAAAACAGG
TAGGGACTCACATCTCTATCTTTTCCCATTCATTCCTTCCGTTGACTCGC
ACCCTCCTACTCTCTCTTCCTCCCTCCCTTCCTGTCCCAGCTTATGCAGC
ACGCCGCACAGACAAGGCCACCCATCAAGGAAAGCATCATCGTCTGTCAT
TCCGAGCCGGGGGCTTGGTACCCTCCCCGCTATCACACGTCACGGTGTCC
GCCGAGGTAGGGGAGCAGGGAGGGAGGGGGAGGGAGGGAAGGGCGGGGTC
GGATTCGCAGCATTGGTACATCGAGATGTATGGAAGCATTTTTCATTTTC
CTTCAATTTAAGTTGGGAATTGGACCCCCTTCTTGATCTGTTCGTTTACT
CACACGAATCTTAATAAGCCACTTTCTTCCTCTCCATTCCCATCTCCATC
CCTCCCTCCCTCGTCAGCGACGCCCTCTACCGCATCGGCCGCACCATGTT
CGAGACGGACCGCCTGCCCTCGGGCTGGGCAGAGAGGATGAGCGAGGACA
AGATGGACGAAAGTGAGCCCCAAGGCGGGATGAAGGGGGGAAAGAAGAGA
GAGAGCATGCGCGGTGTTGCCTCCCATGTTCTCACTGCCAGTGAACCTCC
TCCTCCTCCTCATCCTCCTCCTCTTCCTCTTCCTCTTTGTATGTTCTCTT
CCCAGTCTGGGTCCCGACGGCCTTTCACAAGCAGATCTTCGTTGACGGAG
GCGTAGATGCTGAGCGGTTGCAGGTACATACAGGTCATCCCTTTCCCCTT
CTCCCTTCCTCCTCTCCTTCCCCCAATGCCGACTCGGCCCATTTATGAAT
CTACCCCCTTTTCCCTCCCTCCCTCCCTCATTCCTTCCCGCAGGTGGTTG
GCGAGCCGATCGATACCGACTTCTTCTCCCCTCGCAACCCCGCCCTCCAA
GCCTTCCTCTCCTCTTCCTCCTCTTCCCCCCGCTCCCCCCTCCTGCCTTT
TGTCACTCCGTCCTCCTTCCTGTACCTCTCTGTTTTTAAGTTCGAGGAGA
GGAAGGGCTATGACGTGCTGCTTAGGGCATATTTTGAGGCGTTTGAGCGA
GGGGAGGATGATGTGGCTCTGCTGCTCCTGACAAATGCTTACCATGGGTA
GGAACGGGAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGCGCTGAGTTATTCTGCTTGCATGGGCCTGTCGGTCCGCTGGAGC
GTCAATCCCCGCCTCCCGTTGACGCACTCTTCTCACCCTTCCCCCTCTTC
CCTCCTCCTCACATACCTCCTCCCCCTCAGCTCGGAAGACTTTGAGTCTC
CGGTCCGAGACATCGCCAGAAAGTTCTTCCCCGACAAGCTTTACCCCCAG
GACCTGCCGCCGGTCCACATAATGAGTGGCGTGGACGGTAAGGAGGGAAG
GAGGGAGGGAGGGAGGGAAGGAAGGAGGAGTCATAGTCGATGCTTAGCCT
TGGGCTGCCAAGCCCCCGTCTGTCTGTGTCGTGAGTGCCGTTATGGGAGG
AATGGCGGGACGGAGGGAGGGGAGGACGACACGCCCGTCATCATCCTCAC
CTACTCCTCCTTCCCCTTCTAGCCCTCCACCTCGTGGCACTCTACCAGGC
CGCGGACGTTTTCGTGCTCCCTAGCCGAGGCGAGGGGTGGGGCCGACCGC
ACGTGGAGGCCATGGCCATGGAGATCCCCATCATCGCCACCAACTGGTCC
GGTGCGTGCCCCCTCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TTCGACTTCTGCATCGCATATCCAGTCTTCTCACCCGCCCTCCCTCCCTT
CTCGTCCTCCCTAGGCCCCTCTGAATATATGACCTCCACCAACAGCTACC
CCCTCCGCACAGACGGCCTTGTCGAGATCCAGGACGGGCCCTTCAAGGTA
CGTCTCCCTCCTTCCCGCCCTCCCTCCCTCCCTCCCGCCCGCCCTCCCTC
GTCTTCATACCTGACTCTCCGTCCGTCTCCCTCCTCCTCCCCCTCCCTCC
CTTGAAGGGTCACAAGTGGGCGGAGCCCTCTATCTCGCACCTAGTCTCCC
TCCTCCGTTACACCCTTACCCACCAGGAGGAGGGAAGGGAGCGAGGGAGG
GAGGCCCGGAGGGACATGCAGGCTCGTTATTCCCTTGGGGCCATGGGGAA
GGAGCTGAGAAGGCACTTGGACAGGATCGAGAAGAGGGTGGAGGGGAGGG
AGGGACGGAGGGCGGAGAAGGGGAAGACAAAGGGGGGAGGGGAGGAGTTG
TAGGGGGGGAACAGAGGAAAGAGATAATGAGGGAGTCAGGAGACGGGAGA
AAATGGTGTTGCGGTGAGAGAGGCTTCGGGAGAAGCCAGGACGATAGCTG
AATGTGTGAGCTGTGTATAATTGCATTAATGCCTGTGTGAATGCGCCCGC
GTCTCAGGCATGTGACTGCTTGAAAGTAACAACCACAACTGAGTGGCAGA
AGAGGAAGAGCGATGAGTTACAGAAAGTAGCCAAAGTAATCAAAGACCCT
CCCGATTGCGTA back to topCoding sequence (CDS) from alignment at chr6:1265279..1268340+ >NO06G04480.2 ID=NO06G04480.2|Name=NO06G04480.2|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr6:1265279..1268340+ (Nannochloropsis oceanica) ATGCAGCACGCCGCACAGACAAGGCCACCCATCAAGGAAAGCATCATCGT CTGTCATTCCGAGCCGGGGGCTTGGTACCCTCCCCGCTATCACACGTCAC GGTGTCCGCCGAGCGACGCCCTCTACCGCATCGGCCGCACCATGTTCGAG ACGGACCGCCTGCCCTCGGGCTGGGCAGAGAGGATGAGCGAGGACAAGAT GGACGAAATCTGGGTCCCGACGGCCTTTCACAAGCAGATCTTCGTTGACG GAGGCGTAGATGCTGAGCGGTTGCAGGTGGTTGGCGAGCCGATCGATACC GACTTCTTCTCCCCTCGCAACCCCGCCCTCCAAGCCTTCCTCTCCTCTTC CTCCTCTTCCCCCCGCTCCCCCCTCCTGCCTTTTGTCACTCCGTCCTCCT TCCTGTACCTCTCTGTTTTTAAGTTCGAGGAGAGGAAGGGCTATGACGTG CTGCTTAGGGCATATTTTGAGGCGTTTGAGCGAGGGGAGGATGATGTGGC TCTGCTGCTCCTGACAAATGCTTACCATGGCTCGGAAGACTTTGAGTCTC CGGTCCGAGACATCGCCAGAAAGTTCTTCCCCGACAAGCTTTACCCCCAG GACCTGCCGCCGGTCCACATAATGAGTGGCGTGGACGCCCTCCACCTCGT GGCACTCTACCAGGCCGCGGACGTTTTCGTGCTCCCTAGCCGAGGCGAGG GGTGGGGCCGACCGCACGTGGAGGCCATGGCCATGGAGATCCCCATCATC GCCACCAACTGGTCCGGCCCCTCTGAATATATGACCTCCACCAACAGCTA CCCCCTCCGCACAGACGGCCTTGTCGAGATCCAGGACGGGCCCTTCAAGG GTCACAAGTGGGCGGAGCCCTCTATCTCGCACCTAGTCTCCCTCCTCCGT TACACCCTTACCCACCAGGAGGAGGGAAGGGAGCGAGGGAGGGAGGCCCG GAGGGACATGCAGGCTCGTTATTCCCTTGGGGCCATGGGGAAGGAGCTGA GAAGGCACTTGGACAGGATCGAGAAGAGGGTGGAGGGGAGGGAGGGACGG AGGGCGGAGAAGGGGAAGACAAAGGGGGGAGGGGAGGAGTTGTAG back to top
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