NO06G04450.1, NO06G04450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04450.1
Unique NameNO06G04450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1234
Alignment locationchr6:1251081..1252947 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1251081..1252947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04450.1 vs.
Match: EWM26440.1 (Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 1.600e-64
Identity = 166/337 (49.26%), Postives = 210/337 (62.31%), Query Frame = 0 
Query:    6 PSLSSSPSHSTAVEAQ-TAATSTVAAAESKCPFTSLLSKFLPISLTAAIADIMPTTIATRHAMDSNISGGGCPLGYGRAPTLTQTGEGRGKEGRGGSSTCPLGFGSRNY---PEATTTTDPSYSS----LPKMSLATLQAHAHLNLLSIKGIVYDVSAQAQKWAPLCGHDISRVLAKALEGEDLDLALVDQGLAGLSYDEILHLEKLVAAFQQAFPAVAHLPPHEHHTLFASEVGEGGRAGGKEG-EENGVMLHALIEEKGSNLEHIRLLLCPSTINYPCPRTGLSPLHKAIEVGREGEEGGKEGGAAPLLPLLRLLVEHGADLEARALLYDGERGW 334
            PS  S+PSH    + Q T   S+    ES+CP +SLL  F   S T+ ++ + PT+        S+  G  CPL +GR  +  Q           G   CPLGFG R      +++  T+ S +S    LP+M+LA L+ HAHL+LLS+KG +YDVS QA++WAPLCGHD+SRVLAKA+ G DL+L+ V+QGLAGLSY+E +HLEK+VAA +Q+F AVA LPP E H LFAS VGEG     +EG E++ + LHALIEE GS LE I     PST+N PCPRTGL PLHKAIEVGRE E             +LRLL++ G D   R  LYDGE  W
Sbjct:    8 PSGPSNPSHGNDRQNQITGQKSSSEEQESRCPISSLLGNFFYTS-TSTLSHL-PTSNPVGTL--SSFLGIDCPLRFGRHASAEQAARKMA-----GGGVCPLGFGKRQTIADSQSSNGTEESANSPSIPLPEMTLARLRDHAHLHLLSVKGTIYDVSPQAERWAPLCGHDVSRVLAKAVGGSDLNLSHVNQGLAGLSYEEAVHLEKVVAAMEQSFRAVALLPPQEQHLLFASTVGEGATEVVREGKEDDALKLHALIEEGGS-LESI----SPSTVNLPCPRTGLPPLHKAIEVGREVE-------------VLRLLLQQGGDPHRRVALYDGEDAW 317
The following BLAST results are available for this feature:
BLAST of NO06G04450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26440.11.600e-6449.26Ankyrin repeat-containing domain protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04450NO06G04450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04450.1NO06G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04450.1.cds1NO06G04450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04450.1.cds2NO06G04450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04450.1.cds3NO06G04450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04450.1.cds4NO06G04450.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04450.1 ID=NO06G04450.1|Name=NO06G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
AAAAAACACAGGCATGTCATCGTCGCCGCCGTCCTTGTCGTCGTCCCCAT
CCCATTCCACTGCCGTGGAGGCTCAGACAGCAGCAACATCAACAGTTGCA
GCGGCAGAAAGCAAATGCCCCTTCACGTCCCTCCTGAGCAAGTTCTTGCC
TATCTCCTTGACTGCGGCTATAGCGGACATTATGCCAACCACCATCGCTA
CAAGACACGCGATGGACAGCAACATTAGCGGCGGAGGCTGTCCCCTTGGA
TATGGTCGTGCTCCAACGTTGACACAAACGGGAGAAGGAAGAGGAAAAGA
AGGACGGGGAGGCAGTAGTACCTGCCCCCTTGGTTTCGGCAGCCGTAACT
ATCCCGAAGCGACGACGACAACAGATCCCTCTTATTCCTCCTTGCCGAAG
ATGAGCCTGGCCACCCTCCAAGCCCACGCGCACTTGAATCTCCTATCCAT
TAAGGGCATTGTGTACGACGTCTCGGCTCAGGCACAGAAATGGGCACCAC
TCTGCGGGCACGATATCAGCCGAGTGCTGGCCAAGGCGCTTGAGGGCGAA
GACCTCGACCTCGCCTTGGTCGATCAGGGTCTTGCCGGCCTCTCGTACGA
TGAAATTCTCCATCTAGAAAAGCTGGTGGCTGCCTTCCAACAGGCCTTCC
CCGCCGTGGCCCACCTTCCACCGCACGAGCACCACACCCTCTTTGCCTCG
GAGGTGGGGGAGGGCGGGAGGGCGGGAGGGAAGGAAGGTGAGGAGAACGG
GGTGATGCTGCACGCATTGATTGAAGAGAAGGGAAGCAACTTGGAGCACA
TACGCCTCCTCCTCTGTCCCTCTACCATCAACTATCCCTGTCCCCGCACC
GGTCTCAGTCCTCTGCACAAGGCCATCGAGGTCGGGAGGGAGGGAGAGGA
GGGAGGGAAGGAGGGAGGGGCTGCCCCCCTCCTCCCTCTCCTCAGACTCC
TCGTGGAGCACGGGGCGGATCTGGAGGCGAGGGCATTATTGTACGACGGA
GAAAGGGGATGGGAGCTGGCCAAACGGTTTGGGAGGGGGGAGGAGGTGGA
AGCACTCCTGCGGGTTGGAGGGGGGAAGGAGAAGTAGAGCGAGGGAGAGA
AAGCCCGACGATGGCAGCTGCGACGAGGGAGGAACATGGGCTGCAGGCGA
GTCAAGTGATAAAGAGAGAGGAGAAGGTGTACAGCGGAGAGTGAGAAGGA
CGAAAAGAAACTACTTTTTCAAAGGAGAAACAGG
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protein sequence of NO06G04450.1

>NO06G04450.1-protein ID=NO06G04450.1-protein|Name=NO06G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSSSPPSLSSSPSHSTAVEAQTAATSTVAAAESKCPFTSLLSKFLPISLT
AAIADIMPTTIATRHAMDSNISGGGCPLGYGRAPTLTQTGEGRGKEGRGG
SSTCPLGFGSRNYPEATTTTDPSYSSLPKMSLATLQAHAHLNLLSIKGIV
YDVSAQAQKWAPLCGHDISRVLAKALEGEDLDLALVDQGLAGLSYDEILH
LEKLVAAFQQAFPAVAHLPPHEHHTLFASEVGEGGRAGGKEGEENGVMLH
ALIEEKGSNLEHIRLLLCPSTINYPCPRTGLSPLHKAIEVGREGEEGGKE
GGAAPLLPLLRLLVEHGADLEARALLYDGERGWELAKRFGRGEEVEALLR
VGGGKEK*
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mRNA from alignment at chr6:1251081..1252947+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04450.1 ID=NO06G04450.1|Name=NO06G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr6:1251081..1252947+ (Nannochloropsis oceanica)
AAAAAACACAGGCATGTCATCGTCGCCGCCGTCCTTGTCGTCGTCCCCAT
CCCATTCCACTGCCGTGGAGGCTCAGACAGCAGCAACATCAACAGTTGCA
GCGGCAGAAAGCAAATGCCCCTTCACGTCCCTCCTGAGCAAGTTCTTGCC
TATCTCCTTGACTGCGGCTATAGCGGACATTATGCCAACCACCATCGCTA
CAAGACACGCGATGGACAGCAACATTAGCGGCGGAGGCTGTCCCCTTGGA
TATGGTCGTGCTCCAACGTTGACACAAACGGGAGAAGGAAGAGGAAAAGA
AGGACGGGGAGGCAGTAGTACCTGCCCCCTTGGTTTCGGCAGCCGTAACT
ATCCCGAAGCGACGACGACAACAGATCCCTCTTATTCCTCCTTGCCGAAG
ATGAGCCTGGCCACCCTCCAAGCCCACGCGCACTTGAATCTCCTATCCAT
TAAGGGCATTGTGTACGACGTCTCGGCTCAGGCACAGGTACATAGGGTCA
AGGTGCCAGGCTGAAGGCGTGTTTATCTGTCATTGACAGTGCAGCGATAT
AAGCAATGATTTCCTCCCTTTTTTTGCTTCTCTCCGACTGTGTTGCTTTT
CGTCTATTGCCATCCTCTTCTTCTTTTCTCCTCTTCCCCATCCGCACTTT
CACCCTCCCGTTTCCCTCTCTCCCTCCTTCCCTCTCACTTCAATCGGCTC
GTCCCAGAAATGGGCACCACTCTGCGGGCACGATATCAGCCGAGTGCTGG
CCAAGGCGCTTGAGGGCGAAGACCTCGACCTCGCCTTGGTCGATCAGGTG
AGCGGATGTTGGGGTGGGGGGTATCCAAGTGACTGCACTCGAGAGAAGAA
GAGGAAGAGGTAATGACAAATAAAGGAATGGATTGGGTTCGGGTCTCTGA
GATGAGGGAGGGGGGTAGCACGGAAGCAAAATGACCAGTCGGTCTGCAAA
GGCAGAGAGCGCGCCTCTACTCCTCGAGCCCAACACGCATTGATTTAAAC
GTACTTTCTCTCTCCTTGTTTTCTTACCACGCCCCCCCCCCTCCCTCCCT
CCCTCCCTCCCTTACTTAGGGTCTTGCCGGCCTCTCGTACGATGAAATTC
TCCATCTAGAAAAGCTGGTGGCTGCCTTCCAACAGGCCTTCCCCGCCGTG
GCCCACCTTCCACCGCACGAGCACCACACCCTCTTTGCCTCGGAGGTGGG
GGAGGGCGGGAGGGCGGGAGGGAAGGAAGGTGAGGAGAACGGGGTGATGC
TGCACGCATTGATTGAAGAGAAGGGAAGCAACTTGGAGCACATACGGTGA
GAGAGTGATAAGGAGGGAGGGAAGGAGGCAGGGAGGAGGAAAAACAGAAA
GATCTGTGACACGTCTGACCACATGTCCCTCTCCCCCCCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGCCTCCTCCTCTGT
CCCTCTACCATCAACTATCCCTGTCCCCGCACCGGTCTCAGTCCTCTGCA
CAAGGCCATCGAGGTCGGGAGGGAGGGAGAGGAGGGAGGGAAGGAGGGAG
GGGCTGCCCCCCTCCTCCCTCTCCTCAGACTCCTCGTGGAGCACGGGGCG
GATCTGGAGGCGAGGGCATTATTGTACGACGGAGAAAGGGGATGGGAGCT
GGCCAAACGGTTTGGGAGGGGGGAGGAGGTGGAAGCACTCCTGCGGGTTG
GAGGGGGGAAGGAGAAGTAGAGCGAGGGAGAGAAAGCCCGACGATGGCAG
CTGCGACGAGGGAGGAACATGGGCTGCAGGCGAGTCAAGTGATAAAGAGA
GAGGAGAAGGTGTACAGCGGAGAGTGAGAAGGACGAAAAGAAACTACTTT
TTCAAAGGAGAAACAGG
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Coding sequence (CDS) from alignment at chr6:1251081..1252947+

>NO06G04450.1 ID=NO06G04450.1|Name=NO06G04450.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr6:1251081..1252947+ (Nannochloropsis oceanica)
ATGTCATCGTCGCCGCCGTCCTTGTCGTCGTCCCCATCCCATTCCACTGC
CGTGGAGGCTCAGACAGCAGCAACATCAACAGTTGCAGCGGCAGAAAGCA
AATGCCCCTTCACGTCCCTCCTGAGCAAGTTCTTGCCTATCTCCTTGACT
GCGGCTATAGCGGACATTATGCCAACCACCATCGCTACAAGACACGCGAT
GGACAGCAACATTAGCGGCGGAGGCTGTCCCCTTGGATATGGTCGTGCTC
CAACGTTGACACAAACGGGAGAAGGAAGAGGAAAAGAAGGACGGGGAGGC
AGTAGTACCTGCCCCCTTGGTTTCGGCAGCCGTAACTATCCCGAAGCGAC
GACGACAACAGATCCCTCTTATTCCTCCTTGCCGAAGATGAGCCTGGCCA
CCCTCCAAGCCCACGCGCACTTGAATCTCCTATCCATTAAGGGCATTGTG
TACGACGTCTCGGCTCAGGCACAGAAATGGGCACCACTCTGCGGGCACGA
TATCAGCCGAGTGCTGGCCAAGGCGCTTGAGGGCGAAGACCTCGACCTCG
CCTTGGTCGATCAGGGTCTTGCCGGCCTCTCGTACGATGAAATTCTCCAT
CTAGAAAAGCTGGTGGCTGCCTTCCAACAGGCCTTCCCCGCCGTGGCCCA
CCTTCCACCGCACGAGCACCACACCCTCTTTGCCTCGGAGGTGGGGGAGG
GCGGGAGGGCGGGAGGGAAGGAAGGTGAGGAGAACGGGGTGATGCTGCAC
GCATTGATTGAAGAGAAGGGAAGCAACTTGGAGCACATACGCCTCCTCCT
CTGTCCCTCTACCATCAACTATCCCTGTCCCCGCACCGGTCTCAGTCCTC
TGCACAAGGCCATCGAGGTCGGGAGGGAGGGAGAGGAGGGAGGGAAGGAG
GGAGGGGCTGCCCCCCTCCTCCCTCTCCTCAGACTCCTCGTGGAGCACGG
GGCGGATCTGGAGGCGAGGGCATTATTGTACGACGGAGAAAGGGGATGGG
AGCTGGCCAAACGGTTTGGGAGGGGGGAGGAGGTGGAAGCACTCCTGCGG
GTTGGAGGGGGGAAGGAGAAGTAG
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Synonyms
Publications