NO06G04440.1, NO06G04440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04440.1
Unique NameNO06G04440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1272
Alignment locationchr6:1247348..1249359 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1247348..1249359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04440.1 vs.
Match: XP_005853939.1 (lipolytic protein g-d-s-l family [Nannochloropsis gaditana CCMP526]; EKU22416.1 lipolytic protein g-d-s-l family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 290.8 bits (743), Expect = 4.600e-75
Identity = 131/201 (65.17%), Postives = 165/201 (82.09%), Query Frame = 0 
Query:   85 RFAAALLLLP-LATGRVIMFGDSMFSNGAIKDVLETLAGGKVKIENSALVGASFHDGWVPSIPAQYNYISKIPVPVTAIMDGGGNDVMSVKDNCVAYDTRCKQQIAEAMSILSELLEKMHKDGIQHVIFMGPFYEQDLNKAVDGAYPMLAKVCKEAAIDCHLADTRDINPPLGDDNMHPIQAGYEMLAHRIWEVKLDNDIP 285
            R AA L LLP L  GR +M GDSMFSN A+K+ LE  AGG V IEN ALVGAS H+GWVPSIPA+Y+ +SK P P+T +MDGGGNDV+SVKD+C++++ RC+QQI EA  IL++LLE+MH+D +QHV+ MGP+Y ++LNKAVD  + +L+ VCK A IDCH+ADTRD++PPLGDD +HPIQ GYE+LA RIWE+KLDNDIP
Sbjct:    4 RLAATLFLLPALCLGRTVMIGDSMFSNNAVKNALEYYAGGNVTIENMALVGASLHEGWVPSIPAEYSIMSKNPPPITIVMDGGGNDVISVKDDCLSFNDRCQQQIKEATDILADLLERMHEDKVQHVLLMGPYYLENLNKAVDEGFKLLSNVCKNATIDCHIADTRDLDPPLGDDGIHPIQEGYELLATRIWEIKLDNDIP 204
The following BLAST results are available for this feature:
BLAST of NO06G04440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853939.14.600e-7565.17lipolytic protein g-d-s-l family [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04440NO06G04440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04440.1NO06G04440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04440.1.cds1NO06G04440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04440.1.cds2NO06G04440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04440.1.cds3NO06G04440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04440.1.cds4NO06G04440.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04440.1.cds5NO06G04440.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04440.1 ID=NO06G04440.1|Name=NO06G04440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
CACTGTCGAGCGTAACAATGACAACAACCTGTACACAGCAGAGTCGGCGG
GCAGAAACGTGGGCGATTCTTTTCCTTGTCATACGTCGGAACCCCAAGCG
TGCGTGCGCGAGGATACACAGAGACACACTGCCTCTTTCAATCGCATGGC
GGATCGTAAACTCGACACAGGGCGTACTTTCTGTGGATGTCTTCTCACAT
TACACATCACATGCCATAGGCCTCAACCAAGCCTTACATATCACCAACGA
AAAAGCCATGTTCCGCCTCCGCTTTGCCGCTGCGCTCCTCCTCCTCCCCC
TCGCCACCGGGCGGGTGATTATGTTTGGAGATTCAATGTTCTCAAACGGG
GCCATCAAGGACGTGTTGGAGACCTTGGCCGGAGGAAAAGTCAAGATCGA
GAACTCAGCCTTAGTGGGCGCGAGCTTTCACGACGGGTGGGTGCCTTCCA
TCCCGGCTCAGTATAACTACATTTCCAAGATCCCCGTGCCCGTGACAGCC
ATCATGGACGGCGGCGGCAATGACGTGATGAGCGTGAAAGACAACTGCGT
GGCCTACGATACCCGGTGCAAGCAACAGATCGCAGAGGCCATGTCCATCC
TAAGCGAGCTTTTGGAGAAGATGCACAAGGACGGGATCCAGCACGTAATT
TTCATGGGCCCCTTCTACGAGCAGGACCTGAACAAGGCGGTGGACGGGGC
CTATCCAATGCTGGCCAAGGTGTGCAAGGAGGCCGCCATTGACTGCCACC
TTGCCGACACTCGCGACATCAACCCCCCCCTGGGCGACGACAACATGCAT
CCCATTCAAGCGGGGTATGAAATGCTTGCCCACCGGATTTGGGAGGTTAA
GCTTGACAACGACATTCCCTTCTTTTAAATTCTGATAAAGACGATGAGAG
TGAGAAGAGGAAGAGGCGGAAAGTGCGAAGGAATCTATAGGAGGTAATCA
AAGAGGGGTCGGACAGTGAGAGAAGGAAGAAAATAAAAGGGTAATGGATG
AGACCGAGGCGGTGGTGCTGCCTGGGATCTGGGTTTGGAGGGTGGGAATC
AATCAAAAGGAGACAATAAGGGAATGGAAGAATCAGGACACGAAGAGCAG
ACGTACGACAAAGGCTGAAGAGCATGAAGGAGGTGACGCCATCTTATCAT
GCGGAGCGGCAAAGAAGGAAAGGAAGCAAAAATGCTTTCGACGCATGACG
CTAAGAAAGGAGCTTGGGTATCGATAGACGAAATTAAAGATGAATGAAAG
AGAAAGAGAGATCGCTACGGAA
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protein sequence of NO06G04440.1

>NO06G04440.1-protein ID=NO06G04440.1-protein|Name=NO06G04440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MTTTCTQQSRRAETWAILFLVIRRNPKRACARIHRDTLPLSIAWRIVNST
QGVLSVDVFSHYTSHAIGLNQALHITNEKAMFRLRFAAALLLLPLATGRV
IMFGDSMFSNGAIKDVLETLAGGKVKIENSALVGASFHDGWVPSIPAQYN
YISKIPVPVTAIMDGGGNDVMSVKDNCVAYDTRCKQQIAEAMSILSELLE
KMHKDGIQHVIFMGPFYEQDLNKAVDGAYPMLAKVCKEAAIDCHLADTRD
INPPLGDDNMHPIQAGYEMLAHRIWEVKLDNDIPFF*
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mRNA from alignment at chr6:1247348..1249359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04440.1 ID=NO06G04440.1|Name=NO06G04440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp|location=Sequence derived from alignment at chr6:1247348..1249359- (Nannochloropsis oceanica)
CACTGTCGAGCGTAACAATGACAACAACCTGTACACAGCAGAGTCGGCGG
GCAGAAACGTGGGCGATTCTTTTCCTTGTCATACGTCGGAACCCCAAGCG
TGCGTGCGCGAGGATACACAGAGACACACTGCCTCTTTCAATCGCATGGC
GGATCGTAAACTCGACACAGGGCGTACTTTCTGTGGATGTCTTCTCACAT
TACACATCACATGCCATAGGCCTCAACCAAGCCTTACATATCACCAACGA
AAAAGCCATGTTCCGCCTCCGCTTTGCCGCTGCGCTCCTCCTCCTCCCCC
TCGCCACCGGGCGGGTGATTATGTTTGGAGATTCAATGTTCTCAAACGGG
GCCATCAAGGACGTGTTGGAGACCTTGGCCGGAGGAAAAGTCAAGATCGA
GAACTCAGCCTTAGTGGGCGCGAGCTTTCACGACGGGTAGGTGCGCGTGT
GTGTACAGGGGAAGAACAGCAATGAGAGATGCGGGAGGAGGAAACAATAA
CTCTGGTCCCTCCAAAGAGGTCTCCCAACCCCTGTTCCCTCTCTCTTGTC
CTTCTTTCCTCCTGCCTGCATTCCTTAGGTGGGTGCCTTCCATCCCGGCT
CAGTATAACTACATTTCCAAGATCCCCGTGCCCGTGACAGCCATCATGGA
CGGGTACGTACCCCAGCGAGTCACGTCGTCAACATTCAATTCTGAAGGGT
TGTGCGAGTGCTTACGCGCACGTGTGCTGTCTCTTGTTGACTATCATCGA
TTAAGAAGCGTTTTTTTTGGTATCTTCCTATTTGTACGATTTGTCTTTCT
TTTTCATTCCCCTTGAGTACTGCGCTTCATATAATAGTATATGTCTATAT
GTCTGGTCTGGACTGTCATTGATTCATTGATTCATTTCATCATCCCATCC
TCCCTCTGACTCAGCGGCGGCAATGACGTGATGAGCGTGAAAGACAACTG
CGTGGCCTACGATACCCGGTGCAAGCAACAGATCGCAGAGGCCATGTCCA
TCCTAAGCGAGCTTTTGGAGAAGATGCACAAGGACGGGATCCAGCACGTA
ATTTTCATGGGGTAAGGAGGGAGGGAGGGAGAGAGAGAAGGGGGGCGGTA
AGACAGAGAAAGAATGGGTTTGGCAGTTATCGTGCGCGAGTGATACCGGG
GATATCAATCGGGGCATTTGACGATCACCAAAAATATGAAGGTGATCAGG
TCAACACAAGGAAACACTGGCCGCCTACGCTCCCTCATTTTCCTCCCCTT
CCCTTCATTCCCTCTCTTCCCCTCCTATCCCAGCCCCTTCTACGAGCAGG
ACCTGAACAAGGCGGTGGACGGGGCCTATCCAATGCTGGCCAAGGTGTGC
AAGGAGGCCGCCATTGACTGCCACCTTGCCGACACTCGCGACATCAACCC
CCCCCTGGTAAGGAGTGAGGGAGGGAGGGGAAGGGGAGGGTGTAAGGGCC
ACAAAGGACGTCTCGGTTTGATATTCAGTCACTCACGGACAACATATCTC
TACGTACTCCACACAAACACAGGGCGACGACAACATGCATCCCATTCAAG
CGGGGTATGAAATGCTTGCCCACCGGATTTGGGAGGTTAAGCTTGACAAC
GACATTCCCTTCTTTTAAATTCTGATAAAGACGATGAGAGTGAGAAGAGG
AAGAGGCGGAAAGTGCGAAGGAATCTATAGGAGGTAATCAAAGAGGGGTC
GGACAGTGAGAGAAGGAAGAAAATAAAAGGGTAATGGATGAGACCGAGGC
GGTGGTGCTGCCTGGGATCTGGGTTTGGAGGGTGGGAATCAATCAAAAGG
AGACAATAAGGGAATGGAAGAATCAGGACACGAAGAGCAGACGTACGACA
AAGGCTGAAGAGCATGAAGGAGGTGACGCCATCTTATCATGCGGAGCGGC
AAAGAAGGAAAGGAAGCAAAAATGCTTTCGACGCATGACGCTAAGAAAGG
AGCTTGGGTATCGATAGACGAAATTAAAGATGAATGAAAGAGAAAGAGAG
ATCGCTACGGAA
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Coding sequence (CDS) from alignment at chr6:1247348..1249359-

>NO06G04440.1 ID=NO06G04440.1|Name=NO06G04440.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr6:1247348..1249359- (Nannochloropsis oceanica)
ATGACAACAACCTGTACACAGCAGAGTCGGCGGGCAGAAACGTGGGCGAT
TCTTTTCCTTGTCATACGTCGGAACCCCAAGCGTGCGTGCGCGAGGATAC
ACAGAGACACACTGCCTCTTTCAATCGCATGGCGGATCGTAAACTCGACA
CAGGGCGTACTTTCTGTGGATGTCTTCTCACATTACACATCACATGCCAT
AGGCCTCAACCAAGCCTTACATATCACCAACGAAAAAGCCATGTTCCGCC
TCCGCTTTGCCGCTGCGCTCCTCCTCCTCCCCCTCGCCACCGGGCGGGTG
ATTATGTTTGGAGATTCAATGTTCTCAAACGGGGCCATCAAGGACGTGTT
GGAGACCTTGGCCGGAGGAAAAGTCAAGATCGAGAACTCAGCCTTAGTGG
GCGCGAGCTTTCACGACGGGTGGGTGCCTTCCATCCCGGCTCAGTATAAC
TACATTTCCAAGATCCCCGTGCCCGTGACAGCCATCATGGACGGCGGCGG
CAATGACGTGATGAGCGTGAAAGACAACTGCGTGGCCTACGATACCCGGT
GCAAGCAACAGATCGCAGAGGCCATGTCCATCCTAAGCGAGCTTTTGGAG
AAGATGCACAAGGACGGGATCCAGCACGTAATTTTCATGGGCCCCTTCTA
CGAGCAGGACCTGAACAAGGCGGTGGACGGGGCCTATCCAATGCTGGCCA
AGGTGTGCAAGGAGGCCGCCATTGACTGCCACCTTGCCGACACTCGCGAC
ATCAACCCCCCCCTGGGCGACGACAACATGCATCCCATTCAAGCGGGGTA
TGAAATGCTTGCCCACCGGATTTGGGAGGTTAAGCTTGACAACGACATTC
CCTTCTTTTAA
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Synonyms
Publications