NO06G04350.1, NO06G04350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04350.1
Unique NameNO06G04350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1287
Alignment locationchr6:1221968..1224865 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1221968..1224865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04350.1 vs.
Match: EWM26455.1 (Ribosomal protein S8e/ribosomal biogenesis NSA2 [Nannochloropsis gaditana])

HSP 1 Score: 499.6 bits (1285), Expect = 5.900e-138
Identity = 253/260 (97.31%), Postives = 259/260 (99.62%), Query Frame = 0 
Query:    1 MPQHDYMEQHRKKHGERLDREERLRKKEAREVHRRSRFAQKVHGLRAKLYNAKRYKEKAQMRKTLAMHQEKTNKHANEEGAPEGAVPAYLIDREGVSRAKVLSNTVKQKRAERAGKWSVPLPKVKPVADDEMFRVMQSGKRKAKSWKRMVTKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVKKNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 261
            MPQHDYMEQHRKKHGERLDREERLRKKEAREVHRRS+FAQKVHGLRAKLYNAKRYKEKAQMRKTLAMHQEKTNK AN+EGAPEGAVPAYLIDREG+SRAKVLSN+VKQKRAE+AGKWSVPLPKVKPVADDEMF+VMQSGKRKAKSWKRMVTKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVKKNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV
Sbjct:    1 MPQHDYMEQHRKKHGERLDREERLRKKEAREVHRRSKFAQKVHGLRAKLYNAKRYKEKAQMRKTLAMHQEKTNKRANQEGAPEGAVPAYLIDREGISRAKVLSNSVKQKRAEKAGKWSVPLPKVKPVADDEMFKVMQSGKRKAKSWKRMVTKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVKKNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
The following BLAST results are available for this feature:
BLAST of NO06G04350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26455.15.900e-13897.31Ribosomal protein S8e/ribosomal biogenesis NSA2 [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04350NO06G04350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04350.1NO06G04350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04350.1.cds1NO06G04350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds2NO06G04350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds3NO06G04350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds4NO06G04350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds5NO06G04350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds6NO06G04350.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds7NO06G04350.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds8NO06G04350.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds9NO06G04350.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04350.1.cds10NO06G04350.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04350.1 ID=NO06G04350.1|Name=NO06G04350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp
AAACAATAGGCAGCTCGTGGTTGGTCAAGGAAGAAGCAAAACACAAGGAG
CGACTGTCGTCGTATCCAGTCCAGAAGTAGCGCGCACTCCCTACGCATCA
GAGCCTTACAGATCAGCAACCATGCCGCAACATGACTACATGGAGCAACA
CCGGAAGAAGCACGGGGAGCGCCTCGACCGGGAGGAGCGACTGCGCAAGA
AGGAGGCGCGTGAGGTGCACCGTCGCTCCAGATTCGCGCAGAAAGTACAC
GGGCTGAGGGCCAAGCTGTACAATGCCAAGCGCTATAAGGAGAAGGCCCA
GATGCGCAAGACCCTGGCCATGCACCAGGAGAAGACGAACAAACACGCCA
ACGAGGAGGGCGCGCCAGAGGGGGCCGTTCCCGCCTACCTGATCGACCGA
GAGGGCGTCTCACGGGCGAAAGTCCTTTCCAACACGGTCAAGCAAAAGCG
GGCGGAGCGGGCAGGGAAGTGGAGCGTGCCGCTGCCCAAGGTGAAGCCGG
TGGCCGACGACGAGATGTTCCGGGTCATGCAGTCGGGCAAACGCAAGGCC
AAGTCATGGAAGCGGATGGTGACCAAGGTCACTTTCGTCGGCGAAAACTT
CACCCGCAAAGCTCCCAAGTTCGAACGTTTCATTCGCCCTACCGGCCTGC
GCTTCAAGAAGGCCCATGTCACCCACCCGGACCTGCAGGCGACCTTCTGC
CTGGATATCTTGGGCGTGAAAAAGAATCCCTCCTCGCCCATGTACACCAC
TCTCGGAGTCATCACGAAGGGCACCGTCATCGAGGTGAACGTATCGGAGT
TGGGCTTGGTGACGACGAGTGGGAAAGTTGTGTGGGGGAAATACGCTCAA
GTGACCAATAATCCGGAATTGGATGGCTGCATCAACGCAGTGCTCCTCGT
CTAAGCAGCCTTCCCTCCCTTCCTCCCTTCCTTCCTCCTCCTCCTCCTAT
TTCTACTCCTATTCCCCGTTGTAAGATAGAAGTGATTCGATCCCTTTTCC
CTCCTCTCCAGTACAAGAAAAATAGACAAGCCACAGTTGAAGAAAGAAGA
AAGAGAAGGAAAAGAAGGAGAGAAAAAAAAATAGTTGAAGAACAAGAAAG
AGCGTTATGACGTTAAGAGGAAAGAAGAAAACCGTTTTTCAAAGGGGCGT
TTATTTCTTTTTGTATTTCCTAACCGTCCGTAGCTCTCCTCCCTCTGCAA
ACTCTCTTGTCTTAGATCACTGTCGTACAACCAACCCTGCCTTTCCTCCT
CCTCCTCCATCTCCTCCTTCTCCTCCTCCGCCTCTTG
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protein sequence of NO06G04350.1

>NO06G04350.1-protein ID=NO06G04350.1-protein|Name=NO06G04350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MPQHDYMEQHRKKHGERLDREERLRKKEAREVHRRSRFAQKVHGLRAKLY
NAKRYKEKAQMRKTLAMHQEKTNKHANEEGAPEGAVPAYLIDREGVSRAK
VLSNTVKQKRAERAGKWSVPLPKVKPVADDEMFRVMQSGKRKAKSWKRMV
TKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVK
KNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPEL
DGCINAVLLV*
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mRNA from alignment at chr6:1221968..1224865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04350.1 ID=NO06G04350.1|Name=NO06G04350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2898bp|location=Sequence derived from alignment at chr6:1221968..1224865+ (Nannochloropsis oceanica)
AAACAATAGGCAGCTCGTGGTTGGTCAAGGAAGAAGCAAAACACAAGGAG
CGACTGTCGTCGTATCCAGTCCAGAAGTAGCGCGCACTCCCTACGCATCA
GAGCCTTACAGATCAGCAACCATGGTACGTCTGCCAGAAGGAGGAGACTG
TGATGACTTTTTTAGGGGGGGAGGCTTACCGTCAATGCTCCAAGTCCACG
CAGTAGTTGAGTCTACTGTGCACTATCATCTTCCTCCTCACCCTCCCTGC
CTCCCTCTTTTCCTCGCATGACCACAGCCGCAACATGACTACATGGAGCA
ACACCGGAAGAAGCACGGGGAGCGCCTCGACCGGGAGGAGCGACTGTACG
TTAAGAGGGCTGGGGGCAAAGGGGGAAGGGAGTATGGGAGAAAGGAGGGG
ATGGGGTGGGAGGCGATGCTGTGTCAACGTGTCCACTCAAGGTGAATTTT
TTCCACCCGCGGGCATACGCCAAGTTATGCCTGGCACCTCTCTCATTGAT
GTTCCTCACGAGCTAGTAAAGGTCTCTAAACGCTTTGACTATATCGTCAT
CAAGTCGATTTCCCTCACTTCCTTCCCCCTCCTTTCCCTTCCTCCCGTTC
TCCCACCCTCCTCCCCTTTTACCCCGACAGGCGCAAGAAGGAGGCGCGTG
AGGTGCACCGTCGCTCCAGATTCGCGCAGAAAGTACACGGGCTGAGGGCC
AAGCTGTACAATGCCAAGCGCTATAAGGAGAAGGCCCAGATGCGCAAGAC
GTACGTATCTTATGCCCCTCTTATCCCACTCTCCTTTCCCCCAGCCTTGG
TCTTCTGCACCATTCACCCTCTTCCTGCTCCCTCTCTCCTCCCTGCTCTT
CGTCCTCTTCCCACTGCTCGCCCATGCTTGCTCATCATACCACAACAACT
TTTAATCCCGCTTTCCTTCCCTCCTTCCCAATCTCCCTCCCTCCCTCCCT
CCCTCTCCTTCCAGCCTGGCCATGCACCAGGAGAAGACGAACAAACACGC
CAACGAGGAGGGCGCGCCAGAGGGGGCCGTTCCCGCCTACCTGATCGACC
GAGAGGGCGTCTCACGGGCGAAAGTAAGGGAGTGGGGGAGGGAGCGGGGG
ATGGATGGGGAGCAGTGGCTTGAGGGTTATGTGTGGGATGCCTGGCAACG
ACGACTTATCCTTCTTTAACCCATCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTCCCCTACCTCCAGGTCCTTTCCAACACGGTCAAGCAAA
AGCGGGCGGAGCGGGCAGGGAAGTGGAGCGTGCCGCTGCCCAAGGTGAAG
CCGGTGGCCGACGACGAGATGTTCCGGGTCATGCAGTCGGGCAAACGCAA
GGGTACGTCCGTTACCCCCTCCCTTCCTCCCGCCCGCCCTCCCTTCCCTC
CCTCTCCGGTTTGGTCACGCGGATCATCATAAACGCCTCCTGTCTCCCCT
CCCTCCCTCTCTCCCTCCAGCCAAGTCATGGAAGCGGATGGTGACCAAGG
TCACTTTCGTCGGCGAAAACTTCACCCGCAAAGCTCCCAAGTAGGTGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGG
AGGGAAGAAGGAGGGGTAGTTTAACAGGGAGGGAGGGAGGGAGGGAAGGA
GGGAAGGAGGGAAGGAGGGAGGGAAGGAGGGCTTGCACGGAATATACAGG
TGTCTACCTGTTGATGGATATTTGGAACACGCCGAAGAGGCATCCGCATT
GATGCCGTGCGGGTTCCACTTACACCCCTCCTCCTCCCCCTCCCTCCCTC
CCTCCCTTTCTCCCTCCCTCCCTCCTTTAGGTTCGAACGTTTCATTCGCC
CTACCGGCCTGCGCTTCAAGAAGGCCCATGTCACCCACCCGGACCTGCAG
GTAGGCCCTCCCACCCTCCCTCCCTTCCAATGGACACACTACGCGCCATT
CCTCCCTTGCCTTGTCTTACCCCCCCTCCCTCCTTCCCTCCCTCCCTCCG
CTTTGCAGGCGACCTTCTGCCTGGATATCTTGGGCGTGAAAAAGAATCCC
TCCTCGCCCATGTACACCACTCTCGGAGTCATCACGAAGGGCACCGTCAT
CGAGGTAGGGGGGGAGGGAGGGAGGGGGGAAGGGAAAGTCAGGGCCCAGC
AGGCCGAGACATCGTTGCCTTCATCTCTCTTTCAGCCATCTGGACTCCCT
CTCATGCTTCTTACCCTCCCTCCCTCCCTCCCTGTCTAGGTGAACGTATC
GGAGTTGGGCTTGGTGACGACGAGTGGGAAAGTTGTGTGGGGGAAATACG
CTCAAGTAGGTTCGAGGGAGGGAGGAAGGGAGGGAGGAAGGGAATGGAAA
GGAGTGAAAAGAATTGAGGATACATATTGGACGCATCATTGACTCTCTCG
TCTCTTTGCTACTTCCTCCCTCCTTCCTTTCCTCCCTCCTTCCCTCCCTC
CCTCCCTTCAGGTGACCAATAATCCGGAATTGGATGGCTGCATCAACGCA
GTGCTCCTCGTCTAAGCAGCCTTCCCTCCCTTCCTCCCTTCCTTCCTCCT
CCTCCTCCTATTTCTACTCCTATTCCCCGTTGTAAGATAGAAGTGATTCG
ATCCCTTTTCCCTCCTCTCCAGTACAAGAAAAATAGACAAGCCACAGTTG
AAGAAAGAAGAAAGAGAAGGAAAAGAAGGAGAGAAAAAAAAATAGTTGAA
GAACAAGAAAGAGCGTTATGACGTTAAGAGGAAAGAAGAAAACCGTTTTT
CAAAGGGGCGTTTATTTCTTTTTGTATTTCCTAACCGTCCGTAGCTCTCC
TCCCTCTGCAAACTCTCTTGTCTTAGATCACTGTCGTACAACCAACCCTG
CCTTTCCTCCTCCTCCTCCATCTCCTCCTTCTCCTCCTCCGCCTCTTG
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Coding sequence (CDS) from alignment at chr6:1221968..1224865+

>NO06G04350.1 ID=NO06G04350.1|Name=NO06G04350.1|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at chr6:1221968..1224865+ (Nannochloropsis oceanica)
ATGCCGCAACATGACTACATGGAGCAACACCGGAAGAAGCACGGGGAGCG
CCTCGACCGGGAGGAGCGACTGCGCAAGAAGGAGGCGCGTGAGGTGCACC
GTCGCTCCAGATTCGCGCAGAAAGTACACGGGCTGAGGGCCAAGCTGTAC
AATGCCAAGCGCTATAAGGAGAAGGCCCAGATGCGCAAGACCCTGGCCAT
GCACCAGGAGAAGACGAACAAACACGCCAACGAGGAGGGCGCGCCAGAGG
GGGCCGTTCCCGCCTACCTGATCGACCGAGAGGGCGTCTCACGGGCGAAA
GTCCTTTCCAACACGGTCAAGCAAAAGCGGGCGGAGCGGGCAGGGAAGTG
GAGCGTGCCGCTGCCCAAGGTGAAGCCGGTGGCCGACGACGAGATGTTCC
GGGTCATGCAGTCGGGCAAACGCAAGGCCAAGTCATGGAAGCGGATGGTG
ACCAAGGTCACTTTCGTCGGCGAAAACTTCACCCGCAAAGCTCCCAAGTT
CGAACGTTTCATTCGCCCTACCGGCCTGCGCTTCAAGAAGGCCCATGTCA
CCCACCCGGACCTGCAGGCGACCTTCTGCCTGGATATCTTGGGCGTGAAA
AAGAATCCCTCCTCGCCCATGTACACCACTCTCGGAGTCATCACGAAGGG
CACCGTCATCGAGGTGAACGTATCGGAGTTGGGCTTGGTGACGACGAGTG
GGAAAGTTGTGTGGGGGAAATACGCTCAAGTGACCAATAATCCGGAATTG
GATGGCTGCATCAACGCAGTGCTCCTCGTCTAA
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Synonyms
Publications