NO06G04330.1, NO06G04330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04330.1
Unique NameNO06G04330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1680
Alignment locationchr6:1214728..1217102 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1214728..1217102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04330.1 vs.
Match: EWM26453.1 (s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 577.8 bits (1488), Expect = 2.800e-161
Identity = 305/402 (75.87%), Postives = 344/402 (85.57%), Query Frame = 0 
Query:    4 TSSQPLQLLFACLCFLALLLLPLQATATSTGSSVAAVTTKSSGSCSISSDNKKKSALDRLRRISGGGGSSAPTPSASVSGTRGPDGKIIATPGQAFLTGLLSGAVAGITVDLTLFPLDTIKTRLQASANTRFSLDLLKGMYDGVGPGLLASAPACAAFFGAYDSFKRSLTARFPDPKLAPIVNMLAAAGGDLTQSVVRVPFEVVKQRMQAGVEQTWREAVTNIMASSGPRGFFAGWSALALRDLPFDIIEFPLYEALKARWAAKKGRPLETWEASVCGSLAGGLAAGLTTPLDVVKTRLMTQR--AGQHAYTGLLDCLCRVAKEEGVSALYRGLVPRVVNIALGGAIFFGAYEAFKQVADRALVQKDLDLVEWWAGVKAKAGEMRKRQFSKGVGGSLAKKGG 404
            T  +PLQLL AC C LAL   P+ +TA++  SS  +V   +  + +    +  K+AL +LRRI GG  S++P P+ S  G RGPDGK+I T GQAFLTGLLSGAVAGITVDLTLFPLDTIKTRLQASANT+FSLDLL+G+YDGVGPGL+ASAPACAAFFGAYDSFKR L+ARFPDPK AP+VNM+AAAGGDLTQSVVRVPFEVVKQRMQAGVE+TWREAV NIMAS+GPRGFFAGWSALALRDLPFDIIEFPLYEALK  WA +KG  LETWE+SVCGSLAGG+AAGLTTPLDVVKTRLMTQR  +GQ  Y GLLDCL RVA+EEG+ ALY+GLVPRVVNIALGGAIFFGAYEAFK VADRALVQ+DLD+ EWW GVKA+A EMR RQFS+GVGG+L ++ G
Sbjct:   31 TMRRPLQLLLACYCLLAL---PVSSTASA--SSPGSVIKVTDSARAYKKKDVSKTALTQLRRIQGGASSASPVPTGSSPGQRGPDGKVIPTAGQAFLTGLLSGAVAGITVDLTLFPLDTIKTRLQASANTKFSLDLLRGVYDGVGPGLVASAPACAAFFGAYDSFKRGLSARFPDPKCAPLVNMVAAAGGDLTQSVVRVPFEVVKQRMQAGVERTWREAVRNIMASTGPRGFFAGWSALALRDLPFDIIEFPLYEALKDVWAERKGGKLETWESSVCGSLAGGIAAGLTTPLDVVKTRLMTQRRDSGQ-VYAGLLDCLVRVAREEGIGALYKGLVPRVVNIALGGAIFFGAYEAFKSVADRALVQRDLDVGEWWTGVKARAHEMRTRQFSQGVGGALTRQKG 426
The following BLAST results are available for this feature:
BLAST of NO06G04330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26453.12.800e-16175.87s-adenosylmethionine mitochondrial carrier protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04330NO06G04330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04330.1NO06G04330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04330.1.cds1NO06G04330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04330.1.cds2NO06G04330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04330.1.cds3NO06G04330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04330.1 ID=NO06G04330.1|Name=NO06G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp
CAGGACGGGGTCTCCTCCATTTTGTCAGCCAAGACAAGTCGTCGTAAATG
AGGCCAACATCATCACAACCCCTTCAACTACTATTTGCCTGCCTGTGCTT
CCTGGCCCTCCTCCTCCTCCCTCTCCAGGCCACCGCCACCTCTACCGGGT
CAAGCGTCGCCGCTGTCACGACCAAGAGTAGCGGCAGCTGCAGCATTAGC
AGTGATAACAAGAAGAAGTCGGCCCTCGATCGCCTCCGCCGCATCTCTGG
CGGCGGAGGTTCATCTGCCCCCACGCCGAGTGCCAGCGTCTCCGGCACTC
GCGGTCCGGACGGGAAGATCATCGCCACGCCAGGCCAGGCCTTTCTGACA
GGGCTATTGTCAGGGGCCGTGGCTGGTATCACGGTGGACCTGACCCTCTT
CCCGCTGGACACGATCAAGACCCGGCTGCAAGCAAGTGCCAACACCAGGT
TCTCTCTGGACCTGCTCAAGGGCATGTATGATGGGGTGGGTCCAGGCCTC
TTGGCCTCCGCCCCGGCCTGCGCTGCTTTCTTTGGAGCCTATGACAGCTT
CAAGCGCAGTCTCACCGCCCGCTTTCCCGACCCCAAGCTCGCTCCCATCG
TCAACATGCTGGCGGCTGCAGGAGGCGACCTCACGCAGAGTGTGGTCCGT
GTGCCTTTTGAGGTGGTGAAGCAGCGCATGCAAGCGGGCGTGGAGCAAAC
CTGGCGCGAAGCCGTGACAAATATCATGGCGTCCTCGGGGCCCAGGGGAT
TCTTCGCCGGCTGGTCGGCGTTGGCGTTGCGTGACCTGCCCTTTGACATC
ATCGAGTTTCCCCTGTATGAGGCACTCAAGGCGCGGTGGGCAGCCAAGAA
AGGCCGGCCGCTCGAGACGTGGGAGGCGAGCGTGTGCGGGTCCCTGGCCG
GTGGCTTGGCGGCGGGGCTCACAACGCCGCTGGACGTAGTCAAGACGCGC
CTGATGACACAACGGGCGGGGCAGCATGCCTACACGGGCCTGCTGGACTG
TCTATGCCGCGTGGCTAAGGAGGAAGGTGTAAGTGCGCTCTACCGTGGGC
TTGTGCCCCGTGTAGTTAACATCGCTTTGGGCGGCGCCATCTTCTTCGGT
GCCTACGAGGCATTCAAACAGGTGGCTGACCGAGCGCTCGTGCAGAAGGA
CCTGGACTTGGTCGAGTGGTGGGCCGGGGTCAAGGCAAAGGCAGGCGAAA
TGCGCAAACGGCAATTCTCAAAGGGTGTGGGCGGCAGCCTGGCCAAGAAG
GGGGGCTTCGTGCCGATGGCCGCCGTGGTAGGGCCGCGGACAGGAAAGAG
TCGGACGGCACGCGCGGTGGGGGTGTGTGAATGAGGAAGTGCAGGAGTTG
GGGAAGGTTTCTTGCGATTGCGCGGTGGCGACTTATTTCCTTGTATGGGT
GGTGTGGAAGGAGGGGGGGAAAGCGAGACGGCAAGATTGAAGAGGAGAAG
GCGGATGTCAGATGAGAGGGGCACGCAAAGCATATTGAGTTATGTGTTGC
TTCGGGGAGTTGGGGTCAGGGTGCGCGGACGAAAGACGCCCACACCCTCT
CCTAGGTAACGTGCACATGCTCCGCCATCTGGACGGAGATGGAAGTAAAT
TCCGTCAACAATGGGAACACACACCAAGAAAAACAAAAGCATATGAGAGA
TGAAAACTCTACTAACTATTGTTAAAACAC
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protein sequence of NO06G04330.1

>NO06G04330.1-protein ID=NO06G04330.1-protein|Name=NO06G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MRPTSSQPLQLLFACLCFLALLLLPLQATATSTGSSVAAVTTKSSGSCSI
SSDNKKKSALDRLRRISGGGGSSAPTPSASVSGTRGPDGKIIATPGQAFL
TGLLSGAVAGITVDLTLFPLDTIKTRLQASANTRFSLDLLKGMYDGVGPG
LLASAPACAAFFGAYDSFKRSLTARFPDPKLAPIVNMLAAAGGDLTQSVV
RVPFEVVKQRMQAGVEQTWREAVTNIMASSGPRGFFAGWSALALRDLPFD
IIEFPLYEALKARWAAKKGRPLETWEASVCGSLAGGLAAGLTTPLDVVKT
RLMTQRAGQHAYTGLLDCLCRVAKEEGVSALYRGLVPRVVNIALGGAIFF
GAYEAFKQVADRALVQKDLDLVEWWAGVKAKAGEMRKRQFSKGVGGSLAK
KGGFVPMAAVVGPRTGKSRTARAVGVCE*
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mRNA from alignment at chr6:1214728..1217102+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04330.1 ID=NO06G04330.1|Name=NO06G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2375bp|location=Sequence derived from alignment at chr6:1214728..1217102+ (Nannochloropsis oceanica)
CAGGACGGGGTCTCCTCCATTTTGTCAGCCAAGACAAGTCGTCGTAAATG
AGGCCAACATCATCACAACCCCTTCAACTACTATTTGCCTGCCTGTGCTT
CCTGGCCCTCCTCCTCCTCCCTCTCCAGGCCACCGCCACCTCTACCGGGT
CAAGCGTCGCCGCTGTCACGACCAAGAGTAGCGGCAGCTGCAGCATTAGC
AGTGATAACAAGAAGAAGTCGGTACGTAGTCGAGATCACCTCATCCCAGA
CCAGGCTGGGGGAGACAGTCCAACCCCGCCAAGTATCGTCACTCCATCTC
ATTTCCCCGTCACACGCCTGATGGGGCCTGTGAAGGATGAACTGTAGTCT
TTCCCAATTTTTGGAAAGCCAGGCGAGGTTTTTGCGGGCCATGCTGTTTT
CTCCTTATTACTTTCCTCTTACTTCTGGACTGCTCCATTCCCACCCCCTT
AAAAGTTCCCTGCCCTTGCTTGGATTACGGCACACGCTTACTACAAAAAT
CGCTACCATTAATTTTCAACTTACATCCTATGACCATCTTCTCTCGCATC
TCAGCCAAAAGACCAATTTTCTTCTTGGTCACTCCGTCTTATCCTATTTC
TTTCTTTCCCACCCTTCCCCTCCGTCTCCTATTTTCTCCTCCCTCAGGCC
CTCGATCGCCTCCGCCGCATCTCTGGCGGCGGAGGTTCATCTGCCCCCAC
GCCGAGTGCCAGCGTCTCCGGCACTCGCGGTCCGGACGGGAAGATCATCG
CCACGCCAGGCCAGGCCTTTCTGACAGGGCTATTGTCAGGGGCCGTGGCT
GGTATCACGGTGGACCTGACCCTCTTCCCGCTGGACACGATCAAGACCCG
GCTGCAAGCAAGTGCCAACACCAGGTTCTCTCTGGACCTGCTCAAGGGCA
TGTATGATGGGGTGGGTCCAGGCCTCTTGGCCTCCGCCCCGGCCTGCGCT
GCTTTCTTTGGAGCCTATGACAGCTTCAAGCGCAGTCTCACCGCCCGCTT
TCCCGACCCCAAGCTCGCTCCCATCGTCAACATGCTGGCGGCTGCAGGAG
GCGACCTCACGCAGAGTGTGGTCCGTGTGCCTTTTGAGGTCTGTCGCGAA
GGGGAATGAATGAGGGAGGGAGGGAGGGTGGGTGAGAGGGGGATCCCTGT
GTATGTTTTTGTGAAAAGAAAGGTGGTGGGTGGCTGCGTTGCTGTCGTTG
CCTCGCGGCGATCTGACGGTAATTGACGGCAAATTCCCTGCGGCATTCAC
GTCTTTTTTTTTCTATCTTGGTTTACCGAGAGCTCATCTCCTCCTCCTCC
CTCGCCTTCCTCTCTCCTGCGCCTCCTCCTTTCCCCCCCCTTCCACCCTT
ACGGCAGGTGGTGAAGCAGCGCATGCAAGCGGGCGTGGAGCAAACCTGGC
GCGAAGCCGTGACAAATATCATGGCGTCCTCGGGGCCCAGGGGATTCTTC
GCCGGCTGGTCGGCGTTGGCGTTGCGTGACCTGCCCTTTGACATCATCGA
GTTTCCCCTGTATGAGGCACTCAAGGCGCGGTGGGCAGCCAAGAAAGGCC
GGCCGCTCGAGACGTGGGAGGCGAGCGTGTGCGGGTCCCTGGCCGGTGGC
TTGGCGGCGGGGCTCACAACGCCGCTGGACGTAGTCAAGACGCGCCTGAT
GACACAACGGGCGGGGCAGCATGCCTACACGGGCCTGCTGGACTGTCTAT
GCCGCGTGGCTAAGGAGGAAGGTGTAAGTGCGCTCTACCGTGGGCTTGTG
CCCCGTGTAGTTAACATCGCTTTGGGCGGCGCCATCTTCTTCGGTGCCTA
CGAGGCATTCAAACAGGTGGCTGACCGAGCGCTCGTGCAGAAGGACCTGG
ACTTGGTCGAGTGGTGGGCCGGGGTCAAGGCAAAGGCAGGCGAAATGCGC
AAACGGCAATTCTCAAAGGGTGTGGGCGGCAGCCTGGCCAAGAAGGGGGG
CTTCGTGCCGATGGCCGCCGTGGTAGGGCCGCGGACAGGAAAGAGTCGGA
CGGCACGCGCGGTGGGGGTGTGTGAATGAGGAAGTGCAGGAGTTGGGGAA
GGTTTCTTGCGATTGCGCGGTGGCGACTTATTTCCTTGTATGGGTGGTGT
GGAAGGAGGGGGGGAAAGCGAGACGGCAAGATTGAAGAGGAGAAGGCGGA
TGTCAGATGAGAGGGGCACGCAAAGCATATTGAGTTATGTGTTGCTTCGG
GGAGTTGGGGTCAGGGTGCGCGGACGAAAGACGCCCACACCCTCTCCTAG
GTAACGTGCACATGCTCCGCCATCTGGACGGAGATGGAAGTAAATTCCGT
CAACAATGGGAACACACACCAAGAAAAACAAAAGCATATGAGAGATGAAA
ACTCTACTAACTATTGTTAAAACAC
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Coding sequence (CDS) from alignment at chr6:1214728..1217102+

>NO06G04330.1 ID=NO06G04330.1|Name=NO06G04330.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr6:1214728..1217102+ (Nannochloropsis oceanica)
ATGAGGCCAACATCATCACAACCCCTTCAACTACTATTTGCCTGCCTGTG
CTTCCTGGCCCTCCTCCTCCTCCCTCTCCAGGCCACCGCCACCTCTACCG
GGTCAAGCGTCGCCGCTGTCACGACCAAGAGTAGCGGCAGCTGCAGCATT
AGCAGTGATAACAAGAAGAAGTCGGCCCTCGATCGCCTCCGCCGCATCTC
TGGCGGCGGAGGTTCATCTGCCCCCACGCCGAGTGCCAGCGTCTCCGGCA
CTCGCGGTCCGGACGGGAAGATCATCGCCACGCCAGGCCAGGCCTTTCTG
ACAGGGCTATTGTCAGGGGCCGTGGCTGGTATCACGGTGGACCTGACCCT
CTTCCCGCTGGACACGATCAAGACCCGGCTGCAAGCAAGTGCCAACACCA
GGTTCTCTCTGGACCTGCTCAAGGGCATGTATGATGGGGTGGGTCCAGGC
CTCTTGGCCTCCGCCCCGGCCTGCGCTGCTTTCTTTGGAGCCTATGACAG
CTTCAAGCGCAGTCTCACCGCCCGCTTTCCCGACCCCAAGCTCGCTCCCA
TCGTCAACATGCTGGCGGCTGCAGGAGGCGACCTCACGCAGAGTGTGGTC
CGTGTGCCTTTTGAGGTGGTGAAGCAGCGCATGCAAGCGGGCGTGGAGCA
AACCTGGCGCGAAGCCGTGACAAATATCATGGCGTCCTCGGGGCCCAGGG
GATTCTTCGCCGGCTGGTCGGCGTTGGCGTTGCGTGACCTGCCCTTTGAC
ATCATCGAGTTTCCCCTGTATGAGGCACTCAAGGCGCGGTGGGCAGCCAA
GAAAGGCCGGCCGCTCGAGACGTGGGAGGCGAGCGTGTGCGGGTCCCTGG
CCGGTGGCTTGGCGGCGGGGCTCACAACGCCGCTGGACGTAGTCAAGACG
CGCCTGATGACACAACGGGCGGGGCAGCATGCCTACACGGGCCTGCTGGA
CTGTCTATGCCGCGTGGCTAAGGAGGAAGGTGTAAGTGCGCTCTACCGTG
GGCTTGTGCCCCGTGTAGTTAACATCGCTTTGGGCGGCGCCATCTTCTTC
GGTGCCTACGAGGCATTCAAACAGGTGGCTGACCGAGCGCTCGTGCAGAA
GGACCTGGACTTGGTCGAGTGGTGGGCCGGGGTCAAGGCAAAGGCAGGCG
AAATGCGCAAACGGCAATTCTCAAAGGGTGTGGGCGGCAGCCTGGCCAAG
AAGGGGGGCTTCGTGCCGATGGCCGCCGTGGTAGGGCCGCGGACAGGAAA
GAGTCGGACGGCACGCGCGGTGGGGGTGTGTGAATGA
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Synonyms
Publications