NO06G04320.1, NO06G04320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04320.1
Unique NameNO06G04320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length351
Alignment locationchr6:1213318..1213909 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1213318..1213909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G04320.1 vs.
Match: EWM26450.1 (60s acidic ribosomal protein p2 [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 1.500e-32
Identity = 85/112 (75.89%), Postives = 99/112 (88.39%), Query Frame = 0
Query:    1 MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKDVDTLIKEGSELLATFGGGGGAGPAAAAPAE--AAAAGAAEKKEKKEEKEEEADLGGGMDMFG 111
            MRHLATYLLLKLGGN++PSASDV+TALSAVGVE DE RLSTL+ +LEGKDV+TLI+EGS+LLATFGGGGG G  AAA A   AA AGA ++K+K+E++EEEADLGG MDMFG
Sbjct:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFG 131          
The following BLAST results are available for this feature:
BLAST of NO06G04320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26450.11.500e-3275.8960s acidic ribosomal protein p2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04320NO06G04320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04320.1NO06G04320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04320.1.cds1NO06G04320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04320.1.cds2NO06G04320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04320.1 ID=NO06G04320.1|Name=NO06G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=351bp
ATGCGTCACTTGGCCACCTATCTGCTCCTGAAGCTGGGCGGCAACGACAG
CCCGTCTGCCAGCGATGTGAGCACGGCCCTTTCCGCCGTGGGCGTGGAGA
CTGATGAGGCCCGTCTGTCTACGCTGATCACGGAGCTTGAAGGCAAGGAT
GTGGACACCCTCATCAAGGAGGGCTCCGAGTTGCTGGCTACTTTCGGTGG
AGGTGGTGGTGCTGGGCCGGCGGCAGCGGCACCCGCTGAGGCGGCTGCGG
CTGGGGCTGCCGAGAAGAAGGAGAAGAAAGAGGAGAAGGAGGAAGAAGCG
GACTTGGGCGGAGGCATGGACATGTTCGGGGGCGGCGGCGATGGGTACTA
A
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protein sequence of NO06G04320.1

>NO06G04320.1-protein ID=NO06G04320.1-protein|Name=NO06G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKD
VDTLIKEGSELLATFGGGGGAGPAAAAPAEAAAAGAAEKKEKKEEKEEEA
DLGGGMDMFGGGGDGY*
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mRNA from alignment at chr6:1213318..1213909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04320.1 ID=NO06G04320.1|Name=NO06G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=592bp|location=Sequence derived from alignment at chr6:1213318..1213909+ (Nannochloropsis oceanica)
ATGCGTCACTTGGCCACCTATCTGCTCCTGAAGCTGGGCGGCAACGACAG CCCGTCTGCCAGCGATGTGAGCACGGCCCTTTCCGCCGTGGGCGTGGAGA CTGATGAGGCCCGTCTGTCTACGCTGATCACGGAGCTTGAAGGCAAGGAT GTGGACACCCTCATCAAGGAGGGCTCCGAGTTGCTGGCTACTTTCGGTGG AGGTGGTGGTGCTGGGCCGGCGGCAGCGGCACCCGCTGAGGCGGCTGCGG CTGGGGCTGCCGAGAAGAAGGAGAAGAAAGAGGAGAAGGAGGAAGAAGCG GACTTGGGCGGAGGCATGGACATGTTCGGGGTGAGTGAGGGCGGAAAGAT TTGAAGGGGGAAGAGAGGGAGAGAAGGGGGGAACGAGGGAGGGAGAGATC GAGGGACATATCTTGCGTTCTACGATGAAGCAGGTGAAATTGCGAGTGGG AGATATTGAAAGTATCAGTGTGTCTTCCTTTTGTCAAGCATCTGTGTCTT TGCTCTATGTGACAGCACGTTGGATTTTCATCTCGTTCTCCCCTTTCCCC CCTACGCTCCACCACCAACAGGGCGGCGGCGATGGGTACTAA
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Coding sequence (CDS) from alignment at chr6:1213318..1213909+

>NO06G04320.1 ID=NO06G04320.1|Name=NO06G04320.1|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at chr6:1213318..1213909+ (Nannochloropsis oceanica)
ATGCGTCACTTGGCCACCTATCTGCTCCTGAAGCTGGGCGGCAACGACAG
CCCGTCTGCCAGCGATGTGAGCACGGCCCTTTCCGCCGTGGGCGTGGAGA
CTGATGAGGCCCGTCTGTCTACGCTGATCACGGAGCTTGAAGGCAAGGAT
GTGGACACCCTCATCAAGGAGGGCTCCGAGTTGCTGGCTACTTTCGGTGG
AGGTGGTGGTGCTGGGCCGGCGGCAGCGGCACCCGCTGAGGCGGCTGCGG
CTGGGGCTGCCGAGAAGAAGGAGAAGAAAGAGGAGAAGGAGGAAGAAGCG
GACTTGGGCGGAGGCATGGACATGTTCGGGGGCGGCGGCGATGGGTACTA
A
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Synonyms
Publications