NO06G04310.1, NO06G04310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04310.1
Unique NameNO06G04310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1652
Alignment locationchr6:1209060..1212456 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1209060..1212456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04310.1 vs.
Match: XP_005855409.1 (LL-diaminopimelate aminotransferase [Nannochloropsis gaditana CCMP526]; EKU20940.1 LL-diaminopimelate aminotransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 754.6 bits (1947), Expect = 1.800e-214
Identity = 375/448 (83.71%), Postives = 405/448 (90.40%), Query Frame = 0 
Query:    1 MMRQTLLLALALLATSSHAFLAPLPTATATRARSAG-VMHMSGVERNPNFDKLVGGYLFPEIGRRRTAFLEANPTAKIISLGIGDTTQPIPPHILSGLVQGAARLGTPEGYSGYGDEKGAGMLREKIAAKLYGNRITADEVFVSDGAKCDIGRLQMMFGQNVVTAVQDPSYPVYVDTAVIMGQTGGIDEESRQFDGIVYMPCTPSNDFFPDLTKLSKRPDVIYFCSPNNPTGVSATRAQLESLVAYARAQGSIIVFDAAYAPFIRDPALPKSIFEIEGALECAIEVNSFSKYAGFTGVRLGWTVVPKQLKFKDGSSVHSDFNRIMGTAFNGASNVVQPGGLAILDDEGMAEIQTLINYYLANAAKLRQTVEAMGYKAYGGDNGPYVYVDLGGKSSWDMFSEILEKAQIVTTPGAGFGPGGEGFLRLSAFASKENVEEACERLQKVMAK 448
            MMRQ  LLA+AL ATSS AFL P P    +R      V+ MSGVERNPNF KL+GGYLFPEI RRR+AFLEANP AKIISLGIGDTTQPIPPHILSGLV GA++LGTP GYSGYG ++G   LREKIA+ LYGNRI  D+VFVSDGAKCDIGRLQ+MFG+NVVTAVQDPSYPVYVDTAVIMGQTG I+E+SRQFDGIVYMPC P NDFFPDL  L +RPDVIYFCSPNNPTGV+ATR QLE+LV+YAR QGS+IVFDAAYAPFIRDP+LPKSIFEIEGALECAIEVNSFSKYAGFTGVRLGWTVVPKQLKF+DGSS+H+DFNR+M T FNGASN+VQ GGLAILD EG+AEIQTLI+YYLANAAKLR TVEAMGYKAYGGDNGPYVYVDLGGKSSWD+FSEILEKAQIVTTPGAGFGPGGEGFLRLSAFASKENV+EACERLQKVM K
Sbjct:    1 MMRQVALLAVALCATSSLAFLTPPPRPVRSRCGVRDRVLQMSGVERNPNFGKLMGGYLFPEIARRRSAFLEANPEAKIISLGIGDTTQPIPPHILSGLVHGASKLGTPPGYSGYGPDQGVKDLREKIASTLYGNRIDPDDVFVSDGAKCDIGRLQVMFGKNVVTAVQDPSYPVYVDTAVIMGQTGLINEQSRQFDGIVYMPCNPGNDFFPDLAALPQRPDVIYFCSPNNPTGVAATRPQLEALVSYAREQGSVIVFDAAYAPFIRDPSLPKSIFEIEGALECAIEVNSFSKYAGFTGVRLGWTVVPKQLKFRDGSSMHADFNRMMSTTFNGASNIVQDGGLAILDKEGLAEIQTLISYYLANAAKLRATVEAMGYKAYGGDNGPYVYVDLGGKSSWDVFSEILEKAQIVTTPGAGFGPGGEGFLRLSAFASKENVDEACERLQKVMVK 448
The following BLAST results are available for this feature:
BLAST of NO06G04310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855409.11.800e-21483.71LL-diaminopimelate aminotransferase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04310NO06G04310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04310.1NO06G04310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04310.1.cds1NO06G04310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04310.1.cds2NO06G04310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04310.1.cds3NO06G04310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04310.1.cds4NO06G04310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04310.1.cds5NO06G04310.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04310.1.cds6NO06G04310.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04310.1.cds7NO06G04310.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04310.1.cds8NO06G04310.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04310.1 ID=NO06G04310.1|Name=NO06G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1652bp
AATAGGTAGCATCTTTTTGTTTTCATACTTTCCGCGGTCTTCATGATGCG
ACAAACCCTTCTCCTGGCCCTGGCCCTCCTCGCGACCTCCTCCCATGCCT
TCCTGGCGCCCTTACCTACTGCTACTGCCACCCGCGCCCGCAGCGCTGGT
GTCATGCACATGTCCGGCGTGGAGCGCAATCCGAACTTTGACAAGCTTGT
CGGCGGTTACTTATTCCCCGAGATCGGCCGTCGACGCACTGCGTTTTTGG
AGGCCAACCCAACCGCCAAGATTATCTCTCTGGGCATTGGCGACACGACC
CAGCCGATCCCTCCTCACATCCTGTCAGGCCTCGTACAGGGGGCTGCAAG
GCTCGGCACGCCCGAGGGCTATTCCGGGTACGGCGACGAGAAGGGCGCGG
GCATGCTTCGTGAGAAGATTGCGGCCAAGCTGTACGGAAACCGGATCACG
GCGGACGAGGTGTTTGTCTCGGACGGGGCCAAGTGCGACATCGGGCGGCT
GCAGATGATGTTCGGACAGAACGTGGTGACGGCCGTGCAGGACCCGTCGT
ATCCGGTGTATGTGGACACCGCCGTGATTATGGGGCAGACGGGGGGCATC
GACGAGGAGAGCAGGCAATTCGATGGCATCGTCTACATGCCCTGCACCCC
CTCCAATGACTTCTTCCCCGACCTGACCAAGCTCTCCAAGCGCCCGGACG
TGATCTACTTCTGCTCCCCCAACAACCCCACTGGCGTCTCAGCCACCCGC
GCCCAGCTCGAGTCCCTCGTCGCCTATGCACGAGCGCAGGGGTCCATTAT
CGTCTTTGATGCCGCCTACGCGCCCTTTATCCGCGACCCGGCCCTCCCCA
AGTCCATATTCGAGATTGAGGGCGCGCTGGAGTGTGCCATAGAGGTCAAC
TCCTTTTCCAAGTACGCGGGCTTTACGGGAGTGCGCTTGGGCTGGACCGT
CGTGCCTAAGCAGCTTAAGTTCAAGGACGGGAGCTCGGTGCACAGCGACT
TCAACCGTATTATGGGCACGGCCTTCAACGGGGCCTCCAACGTGGTGCAG
CCAGGTGGCCTCGCTATCCTCGACGACGAAGGGATGGCCGAGATTCAGAC
CCTCATCAACTACTACCTGGCAAATGCGGCCAAACTCCGGCAGACGGTGG
AGGCCATGGGTTACAAGGCATACGGTGGTGACAACGGCCCATACGTGTAC
GTGGATTTGGGCGGTAAGAGCAGCTGGGACATGTTCTCCGAGATTTTGGA
GAAGGCCCAGATCGTCACCACCCCGGGCGCTGGATTCGGCCCGGGAGGGG
AGGGTTTCTTGCGCCTGAGTGCCTTTGCCTCCAAAGAAAACGTTGAGGAG
GCGTGCGAGCGCTTGCAAAAGGTCATGGCCAAAAGCCAGTGAGCGGGGGG
GTTGGAGTGTGAAAGGCGAAGGGACACGTCCGTGAGGAGGGATGTGGACT
GTTGTTGCATCGAGCGTGGAAAAAGCAGTAAGAAAATACCTTGATTGAGC
CTGAAAGTAATACCCTGATTGCAAAATGTCATGGTTAAGAGCCAGTGAGA
GGGGGGGGGGGTTGAGGAGGGGCTTGGACTTTTGTTGCGAACTTGGAAAC
AAACAAAAAGAAAATACCTTGATAAATCCTTAAAGTAACACCCTGAACGA
AG
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protein sequence of NO06G04310.1

>NO06G04310.1-protein ID=NO06G04310.1-protein|Name=NO06G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MMRQTLLLALALLATSSHAFLAPLPTATATRARSAGVMHMSGVERNPNFD
KLVGGYLFPEIGRRRTAFLEANPTAKIISLGIGDTTQPIPPHILSGLVQG
AARLGTPEGYSGYGDEKGAGMLREKIAAKLYGNRITADEVFVSDGAKCDI
GRLQMMFGQNVVTAVQDPSYPVYVDTAVIMGQTGGIDEESRQFDGIVYMP
CTPSNDFFPDLTKLSKRPDVIYFCSPNNPTGVSATRAQLESLVAYARAQG
SIIVFDAAYAPFIRDPALPKSIFEIEGALECAIEVNSFSKYAGFTGVRLG
WTVVPKQLKFKDGSSVHSDFNRIMGTAFNGASNVVQPGGLAILDDEGMAE
IQTLINYYLANAAKLRQTVEAMGYKAYGGDNGPYVYVDLGGKSSWDMFSE
ILEKAQIVTTPGAGFGPGGEGFLRLSAFASKENVEEACERLQKVMAKSQ*
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mRNA from alignment at chr6:1209060..1212456+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04310.1 ID=NO06G04310.1|Name=NO06G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3397bp|location=Sequence derived from alignment at chr6:1209060..1212456+ (Nannochloropsis oceanica)
AATAGGTAGCATCTTTTTGTTTTCATACTTTCCGCGGTCTTCATGATGCG
ACAAACCCTTCTCCTGGCCCTGGCCCTCCTCGCGACCTCCTCCCATGCCT
TCCTGGCGCCCTTACCTACTGCTACTGCCACCCGCGCCCGCAGCGCTGGT
GTCATGCACATGTCCGGCGTGGAGCGCAATCCGAACTTTGACAAGCTTGT
CGGCGGGTACGTATATCTTTACAAAGTGTGATGTCTGTGCTCGAACCATC
CGCTCGAAAACCGATTTGATTCCTCACCTTTTTCCGACATCCCGTAGCCT
TGGTGCGCATAAAATGTTTCGCCTGTCCATGTTTCTTTGTTTTTCGTACG
CTGCTTATTTTGTCCTTCTGTAATGTTTCCAAGGTGGTCATCCTTATAAC
CCTCCGCCGTACCTCGCTCGCCTTCCTTTCCCACTCATTTTCTCCGTTCC
CCCTCTACTCCCCCCTGTGAACCCCCTTCCCTCAGTTACTTATTCCCCGA
GATCGGCCGTCGACGCACTGCGTTTTTGGAGGCCAACCCAACCGCCAAGA
TTATCTCTCTGGGCATTGGCGACACGACCCAGCCGATCCCTCCTCACATC
CTGTCAGGCCTCGTACAGGGGGCTGCAAGGCTCGGCACGCCCGAGGGCTA
TTCCGGGTAAGAAGAGAGAGAGCGAGCTGCACGAGGAGAGGGACTGAGTG
GTAGAAGGGCACCATGGGTTCTTTTTCGAGTCCTCTCGAGTGGAGGAAAA
GGGGCAGAGAGGCTTTTGGAAAATTGCATTGCTGAAAAGTTGCAGATCAA
GATGAGGGCTTTTGTCACTGTTCACCCTTGCTTTTTATTCTCCCCCCTCC
CTCCTTCGCTTGGTGCCTTACCCAGGTACGGCGACGAGAAGGGCGCGGGC
ATGCTTCGTGAGAAGATTGCGGCCAAGCTGTACGGAAACCGGATCACGGC
GGACGAGGTGTTTGTCTCGGACGGGGCCAAGTGCGACATCGGGCGGCTGC
AGATGATGTTCGGACAGAACGTGGTGACGGCCGTGCAGGACCCGTCGTAT
CCGGTGTATGTGGACACCGCCGTGATTATGGGGCAGACGGGGGGCATCGA
CGAGGAGAGCAGGCAATTCGATGGTGCGTGTGTTGGCGGCTGTATTATTA
TTGTTATGATGATTGTGTCGTACATGTGGCTAAGATCATTTGTAGTGATT
AGTGCAAGATGCTATTATAATTATCTCTCTGTATATATGGCGAGTAGTAG
TAGTACAAGTAGTCGTGGAGGGAGAGGAAGGAGGATTGCTGCCTGTCTCA
GCGCAGCCCCCCCCCTTCACTGACTCTCCTTTTCTCCTCCCCCCCCCCCC
TTCACTGACTCTCCTCTTCTCCTCCCCCCCCTTCTCCTCCTCTCTCAGGC
ATCGTCTACATGCCCTGCACCCCCTCCAATGACTTCTTCCCCGACCTGAC
CAAGCTCTCCAAGCGCCCGGACGTGATCTACTTCTGCTCCCCCAACAACC
CCACTGGCGTCTCAGCCACCCGCGCCCAGCTCGAGTCCCTCGTCGCCTAT
GCACGAGCGCAGGGGTCCATTATCGTCTTTGATGCCGCCTACGCGCCCTT
TATCCGCGACCCGGCCCTCCCCAAGTCCATATTCGAGATTGAGGGCGCGC
TGGAGTGTGCCATAGAGGTCAACTCCTTTTCCAAGGTGAAGGGGGGGGGA
AGGAGGGAAGGACAGGGGCGGAGGGTGAAGAAGGAGATGGGAGTGAAGGA
GAGGGGAGGAAGTGTTTCTCACCTTCCGGTGATGCCATGTGCTTCACCTG
TGATTTTCTCACCTCAGCCTTCTCTCCCTCCTTTCTCGCCCCCCCCCTCC
CTTCCCTCCTCTCTCCCTTCATCGTGTTGCAGTACGCGGGCTTTACGGGA
GTGCGCTTGGGCTGGACCGTCGTGCCTAAGCAGCTTAAGTTCAAGGACGG
GAGCTCGGTACGTGTTAGGCACGAGGGGAAGAAGGGAGGGATGGAGGGAG
GGACAAGAGGAGTGAGGGAAGGAAGGAAGGAAGGAAGGAATGCGAATGGG
AAAGAAGGGAAGGAAGCGATTTTGTATGTGGAGTTGGCGGGGCAAGGAGC
TTGGGAAGGCATGTCAGGTGGACTTGAATGGAATGTGAGGTGGACTTAGA
AGGCATGGGAGGTGGGATTGGAAAGTCGGAGTAGCAGCACTGAGGCCTCC
TGCTCTGACACTCATTCGCTCTCCCTCCCTGCCTCCTTCCTTCCCTCCCT
TCCTTCCTCCCTTCCTTCCTCCCAGGTGCACAGCGACTTCAACCGTATTA
TGGGCACGGCCTTCAACGGGGCCTCCAACGTGGTGCAGCCAGGTGGCCTC
GCTATCCTCGACGACGAAGGGATGGCCGAGATTCAGGTAAGGAAAAAGGC
AGGGAAGGAGGGAGGGAGGGAAGGAGGAAGGGAGGGGAGGAGGGAGCAGA
AGGCCTCTATGCAGGTGGAGTAGCGTAAGAGACTACGAGTTGAAAAGCAG
CTTTCTCTCGTGCTTCAATACGCCTCGACACATTTCAATATTCCTCAACA
TGTCTCAATGGCTCGCCTGAACCTCAGTCCCGCCCTCAAACGTGCCGCCT
ACACCCCCTGATGAATGCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCC
AGACCCTCATCAACTACTACCTGGCAAATGCGGCCAAACTCCGGCAGACG
GTGGAGGCCATGGGTTACAAGGTACGTCGATGTGCTAAAGGGAGGGAGCG
AGGAGAAGTGGGAAGGAATGAAGGACGCCAATCTCGCATCAAACACAAGC
ACGAGAGAGGCGCTGCGAGGCTGGGTCTTGTAAGGGAGAAAATCCAATGC
GGCCTCGTCATTCACTTGTGTCATTATTCTCCTCTGCTTCCCTCCCCACT
TTTCGTGCCCAGGCATACGGTGGTGACAACGGCCCATACGTGTACGTGGA
TTTGGGCGGTAAGAGCAGCTGGGACATGTTCTCCGAGATTTTGGAGAAGG
CCCAGATCGTCACCACCCCGGGCGCTGGATTCGGCCCGGGAGGGGAGGGT
TTCTTGCGCCTGAGTGCCTTTGCCTCCAAAGAAAACGTTGAGGAGGCGTG
CGAGCGCTTGCAAAAGGTCATGGCCAAAAGCCAGTGAGCGGGGGGGTTGG
AGTGTGAAAGGCGAAGGGACACGTCCGTGAGGAGGGATGTGGACTGTTGT
TGCATCGAGCGTGGAAAAAGCAGTAAGAAAATACCTTGATTGAGCCTGAA
AGTAATACCCTGATTGCAAAATGTCATGGTTAAGAGCCAGTGAGAGGGGG
GGGGGGTTGAGGAGGGGCTTGGACTTTTGTTGCGAACTTGGAAACAAACA
AAAAGAAAATACCTTGATAAATCCTTAAAGTAACACCCTGAACGAAG
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Coding sequence (CDS) from alignment at chr6:1209060..1212456+

>NO06G04310.1 ID=NO06G04310.1|Name=NO06G04310.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr6:1209060..1212456+ (Nannochloropsis oceanica)
ATGATGCGACAAACCCTTCTCCTGGCCCTGGCCCTCCTCGCGACCTCCTC
CCATGCCTTCCTGGCGCCCTTACCTACTGCTACTGCCACCCGCGCCCGCA
GCGCTGGTGTCATGCACATGTCCGGCGTGGAGCGCAATCCGAACTTTGAC
AAGCTTGTCGGCGGTTACTTATTCCCCGAGATCGGCCGTCGACGCACTGC
GTTTTTGGAGGCCAACCCAACCGCCAAGATTATCTCTCTGGGCATTGGCG
ACACGACCCAGCCGATCCCTCCTCACATCCTGTCAGGCCTCGTACAGGGG
GCTGCAAGGCTCGGCACGCCCGAGGGCTATTCCGGGTACGGCGACGAGAA
GGGCGCGGGCATGCTTCGTGAGAAGATTGCGGCCAAGCTGTACGGAAACC
GGATCACGGCGGACGAGGTGTTTGTCTCGGACGGGGCCAAGTGCGACATC
GGGCGGCTGCAGATGATGTTCGGACAGAACGTGGTGACGGCCGTGCAGGA
CCCGTCGTATCCGGTGTATGTGGACACCGCCGTGATTATGGGGCAGACGG
GGGGCATCGACGAGGAGAGCAGGCAATTCGATGGCATCGTCTACATGCCC
TGCACCCCCTCCAATGACTTCTTCCCCGACCTGACCAAGCTCTCCAAGCG
CCCGGACGTGATCTACTTCTGCTCCCCCAACAACCCCACTGGCGTCTCAG
CCACCCGCGCCCAGCTCGAGTCCCTCGTCGCCTATGCACGAGCGCAGGGG
TCCATTATCGTCTTTGATGCCGCCTACGCGCCCTTTATCCGCGACCCGGC
CCTCCCCAAGTCCATATTCGAGATTGAGGGCGCGCTGGAGTGTGCCATAG
AGGTCAACTCCTTTTCCAAGTACGCGGGCTTTACGGGAGTGCGCTTGGGC
TGGACCGTCGTGCCTAAGCAGCTTAAGTTCAAGGACGGGAGCTCGGTGCA
CAGCGACTTCAACCGTATTATGGGCACGGCCTTCAACGGGGCCTCCAACG
TGGTGCAGCCAGGTGGCCTCGCTATCCTCGACGACGAAGGGATGGCCGAG
ATTCAGACCCTCATCAACTACTACCTGGCAAATGCGGCCAAACTCCGGCA
GACGGTGGAGGCCATGGGTTACAAGGCATACGGTGGTGACAACGGCCCAT
ACGTGTACGTGGATTTGGGCGGTAAGAGCAGCTGGGACATGTTCTCCGAG
ATTTTGGAGAAGGCCCAGATCGTCACCACCCCGGGCGCTGGATTCGGCCC
GGGAGGGGAGGGTTTCTTGCGCCTGAGTGCCTTTGCCTCCAAAGAAAACG
TTGAGGAGGCGTGCGAGCGCTTGCAAAAGGTCATGGCCAAAAGCCAGTGA
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Synonyms
Publications