NO06G04150.1, NO06G04150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04150.1
Unique NameNO06G04150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1192
Alignment locationchr6:1158207..1159398 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1158207..1159398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04150.1 vs.
Match: CEM01544.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 157.5 bits (397), Expect = 8.000e-35
Identity = 103/253 (40.71%), Postives = 150/253 (59.29%), Query Frame = 0 
Query:  112 RRRRRSSSNSKPPHGSNRDSYSGRSTSATAADTNDMRGQGLRKALSALTGLRGDKPSARKGQAGTSRKKSSPSSPSIAPKGSVVSLSPRGATTRLNKMLAHAGVASRRSAEEMIAQGKVSVNGVIVLDVGCKVDPSVDSITVEGKAAPVALRKASEVVWMKVNKPKGTLTSITDSKGRKCLGDLVESAVEKRLLPVGRLDRDTAGLLLMTNDNEAINLLTHPSFGHVKLYKAVVEKGMPSVHVLHQLKRGLVL 365
            R++RR          S R   + +   A + D + +    + +   AL   R     A K  + +S +  S ++PS+       SL  R A  RL K+++ AG+ASRR+AEEMI  G+V VNGV+V D+G KVD   D +TV+G+   +A+R   E+ W+ V+KPKG + S+ D + RK + DLV  A   RLLPVGRLDRD++GLLL+TNDN+ ++ LTHPS+GH K Y   V+ G P   VL++L  G++L
Sbjct:   56 RKKRRHRKGPAISPSSPRYLLTQQGRRAMSKDRSLLVKSEIHRVRRALREQR-----AAKLDSSSSLQDPSQNAPSLP------SLEERSAPERLQKVISRAGIASRRAAEEMILDGRVRVNGVVVTDLGVKVDALGDRVTVDGRK--IAVRPPEEIKWIAVHKPKGYICSMNDDRDRKTVKDLVPMAERLRLLPVGRLDRDSSGLLLLTNDNKWLHPLTHPSYGHQKRYIVTVDNGTPKYDVLNELAEGVLL 295
The following BLAST results are available for this feature:
BLAST of NO06G04150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEM01544.18.000e-3540.71unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04150NO06G04150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04150.1NO06G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04150.1.cds1NO06G04150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04150.1 ID=NO06G04150.1|Name=NO06G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp
AACCAACAAATACACACCATGCCTCCCCTTATGCAAGCACAGGTGTCATC
ATGGTGCCAAGAAGAAGGTCTCGAGCAATAGGTGCACCAGTACGACGTAT
GGTTGGGGTCCTGACACTCTTATTTGCCGGCCACAGCTTATTCGTCACCA
CCCATGCCCGTGCTGCATTTCTGCTGCCCTCCGCCGCCTCGGGTCGCTGC
CCTTCATCACGCTCCCACCCAGACCCTGCGACAGGAAGGAGGAGACACAA
TGTCCCACATATGGCACGTACCAGCGGTAGCAGCGGAGGTGGCGGTGGTG
GTGGCCGGAGGGATGGAGGAGGCAATTACAGAGGAGCCAACCGGGATGCG
CCACGCCGACGCTTTAATGACGACGACGACGAACGGCGCCGCCGCCGCAG
CAGCAGCAATAGCAAGCCCCCACATGGCAGCAATAGAGACAGTTACAGTG
GACGCAGTACATCAGCTACAGCAGCCGACACAAACGACATGCGTGGACAG
GGACTACGCAAGGCTTTGTCGGCACTAACGGGCCTCCGTGGTGACAAACC
CTCCGCTCGAAAGGGCCAAGCAGGCACATCCAGAAAGAAATCGTCTCCCT
CCTCCCCATCCATAGCACCGAAAGGTAGCGTCGTGTCCCTCTCTCCCCGT
GGGGCCACTACGCGGCTGAATAAGATGCTGGCGCATGCCGGAGTCGCCTC
TCGACGAAGCGCAGAGGAAATGATTGCTCAAGGGAAGGTCAGCGTGAATG
GCGTGATTGTGTTGGACGTGGGTTGCAAGGTTGATCCATCTGTGGACTCC
ATAACGGTGGAGGGGAAGGCTGCGCCGGTAGCGTTGCGGAAGGCGAGTGA
GGTGGTGTGGATGAAGGTGAACAAGCCGAAGGGCACTCTGACGTCAATCA
CGGACAGCAAAGGCCGTAAATGTCTGGGGGATCTGGTGGAAAGCGCGGTG
GAAAAGCGGCTTTTGCCTGTTGGACGGTTGGACAGGGACACTGCGGGATT
GTTGTTGATGACGAATGACAACGAGGCAATCAATCTGTTGACGCACCCGT
CCTTTGGCCACGTTAAGTTGTACAAGGCTGTGGTGGAGAAGGGCATGCCG
TCTGTGCATGTTTTGCACCAGCTTAAGAGGGGCTTGGTGCTCTTGGAGGA
GGAGAACGGGGGTAAAGAGGAGCTGGAGGGGGGGTAAGGGGA
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protein sequence of NO06G04150.1

>NO06G04150.1-protein ID=NO06G04150.1-protein|Name=NO06G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MVPRRRSRAIGAPVRRMVGVLTLLFAGHSLFVTTHARAAFLLPSAASGRC
PSSRSHPDPATGRRRHNVPHMARTSGSSGGGGGGGRRDGGGNYRGANRDA
PRRRFNDDDDERRRRRSSSNSKPPHGSNRDSYSGRSTSATAADTNDMRGQ
GLRKALSALTGLRGDKPSARKGQAGTSRKKSSPSSPSIAPKGSVVSLSPR
GATTRLNKMLAHAGVASRRSAEEMIAQGKVSVNGVIVLDVGCKVDPSVDS
ITVEGKAAPVALRKASEVVWMKVNKPKGTLTSITDSKGRKCLGDLVESAV
EKRLLPVGRLDRDTAGLLLMTNDNEAINLLTHPSFGHVKLYKAVVEKGMP
SVHVLHQLKRGLVLLEEENGGKEELEGG*
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mRNA from alignment at chr6:1158207..1159398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04150.1 ID=NO06G04150.1|Name=NO06G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp|location=Sequence derived from alignment at chr6:1158207..1159398- (Nannochloropsis oceanica)
AACCAACAAATACACACCATGCCTCCCCTTATGCAAGCACAGGTGTCATC
ATGGTGCCAAGAAGAAGGTCTCGAGCAATAGGTGCACCAGTACGACGTAT
GGTTGGGGTCCTGACACTCTTATTTGCCGGCCACAGCTTATTCGTCACCA
CCCATGCCCGTGCTGCATTTCTGCTGCCCTCCGCCGCCTCGGGTCGCTGC
CCTTCATCACGCTCCCACCCAGACCCTGCGACAGGAAGGAGGAGACACAA
TGTCCCACATATGGCACGTACCAGCGGTAGCAGCGGAGGTGGCGGTGGTG
GTGGCCGGAGGGATGGAGGAGGCAATTACAGAGGAGCCAACCGGGATGCG
CCACGCCGACGCTTTAATGACGACGACGACGAACGGCGCCGCCGCCGCAG
CAGCAGCAATAGCAAGCCCCCACATGGCAGCAATAGAGACAGTTACAGTG
GACGCAGTACATCAGCTACAGCAGCCGACACAAACGACATGCGTGGACAG
GGACTACGCAAGGCTTTGTCGGCACTAACGGGCCTCCGTGGTGACAAACC
CTCCGCTCGAAAGGGCCAAGCAGGCACATCCAGAAAGAAATCGTCTCCCT
CCTCCCCATCCATAGCACCGAAAGGTAGCGTCGTGTCCCTCTCTCCCCGT
GGGGCCACTACGCGGCTGAATAAGATGCTGGCGCATGCCGGAGTCGCCTC
TCGACGAAGCGCAGAGGAAATGATTGCTCAAGGGAAGGTCAGCGTGAATG
GCGTGATTGTGTTGGACGTGGGTTGCAAGGTTGATCCATCTGTGGACTCC
ATAACGGTGGAGGGGAAGGCTGCGCCGGTAGCGTTGCGGAAGGCGAGTGA
GGTGGTGTGGATGAAGGTGAACAAGCCGAAGGGCACTCTGACGTCAATCA
CGGACAGCAAAGGCCGTAAATGTCTGGGGGATCTGGTGGAAAGCGCGGTG
GAAAAGCGGCTTTTGCCTGTTGGACGGTTGGACAGGGACACTGCGGGATT
GTTGTTGATGACGAATGACAACGAGGCAATCAATCTGTTGACGCACCCGT
CCTTTGGCCACGTTAAGTTGTACAAGGCTGTGGTGGAGAAGGGCATGCCG
TCTGTGCATGTTTTGCACCAGCTTAAGAGGGGCTTGGTGCTCTTGGAGGA
GGAGAACGGGGGTAAAGAGGAGCTGGAGGGGGGGTAAGGGGA
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Coding sequence (CDS) from alignment at chr6:1158207..1159398-

>NO06G04150.1 ID=NO06G04150.1|Name=NO06G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr6:1158207..1159398- (Nannochloropsis oceanica)
ATGGTGCCAAGAAGAAGGTCTCGAGCAATAGGTGCACCAGTACGACGTAT
GGTTGGGGTCCTGACACTCTTATTTGCCGGCCACAGCTTATTCGTCACCA
CCCATGCCCGTGCTGCATTTCTGCTGCCCTCCGCCGCCTCGGGTCGCTGC
CCTTCATCACGCTCCCACCCAGACCCTGCGACAGGAAGGAGGAGACACAA
TGTCCCACATATGGCACGTACCAGCGGTAGCAGCGGAGGTGGCGGTGGTG
GTGGCCGGAGGGATGGAGGAGGCAATTACAGAGGAGCCAACCGGGATGCG
CCACGCCGACGCTTTAATGACGACGACGACGAACGGCGCCGCCGCCGCAG
CAGCAGCAATAGCAAGCCCCCACATGGCAGCAATAGAGACAGTTACAGTG
GACGCAGTACATCAGCTACAGCAGCCGACACAAACGACATGCGTGGACAG
GGACTACGCAAGGCTTTGTCGGCACTAACGGGCCTCCGTGGTGACAAACC
CTCCGCTCGAAAGGGCCAAGCAGGCACATCCAGAAAGAAATCGTCTCCCT
CCTCCCCATCCATAGCACCGAAAGGTAGCGTCGTGTCCCTCTCTCCCCGT
GGGGCCACTACGCGGCTGAATAAGATGCTGGCGCATGCCGGAGTCGCCTC
TCGACGAAGCGCAGAGGAAATGATTGCTCAAGGGAAGGTCAGCGTGAATG
GCGTGATTGTGTTGGACGTGGGTTGCAAGGTTGATCCATCTGTGGACTCC
ATAACGGTGGAGGGGAAGGCTGCGCCGGTAGCGTTGCGGAAGGCGAGTGA
GGTGGTGTGGATGAAGGTGAACAAGCCGAAGGGCACTCTGACGTCAATCA
CGGACAGCAAAGGCCGTAAATGTCTGGGGGATCTGGTGGAAAGCGCGGTG
GAAAAGCGGCTTTTGCCTGTTGGACGGTTGGACAGGGACACTGCGGGATT
GTTGTTGATGACGAATGACAACGAGGCAATCAATCTGTTGACGCACCCGT
CCTTTGGCCACGTTAAGTTGTACAAGGCTGTGGTGGAGAAGGGCATGCCG
TCTGTGCATGTTTTGCACCAGCTTAAGAGGGGCTTGGTGCTCTTGGAGGA
GGAGAACGGGGGTAAAGAGGAGCTGGAGGGGGGGTAA
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Synonyms
Publications