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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1153826..1157523 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04120.1 vs.
Match: EWM26407.1 (phosphoglycerate kinase [Nannochloropsis gaditana]) HSP 1 Score: 787.7 bits (2033), Expect = 1.900e-224 Identity = 413/454 (90.97%), Postives = 432/454 (95.15%), Query Frame = 0
Query: 1 MKFTGLVTLLSVASAQAFVAPAMFKAASAGSLTTATSAVTAAPVCPS-NRQGVVTMAKKSVSSLSDAELKGKRVFVRCDLNVPLDGKKITDDTRIRASVPTIEYLASKGAKVLLTSHLGRPKGKEDKYSLAPVADRLTELLGKKVTFVPDCIGETVTSAVAGLAEGDVALLENVRFYPEEEKNVPAFAEKLAANADLYVNDAFGTAHRAHGSTEGVSKFLKPAVAGFLLQKELDYLDGAVSQPKRPFAAIVGGSKVSTKITVIETLINKVDKIVIGGGMVFTFLKARGHNVGGSLVEEDKLDLARELEALAAKKGVKFILPTDVVIADKFAPDANSKVVAATAIPEGWMGLDNGPESTKMIQAELADCKTIIWNGPMGVFEFDKFAAGTSAIAQTMAELTAKGATTIVGGGDSVAAVEKAGLADKLSHVSTGGGASLELLEGKVLPGVAALNES 454
MK TGLVTLLSVASAQAFVAP+ FKA SAG++T SA A PVCPS +R+GV+TMAKKSV SL+DA+LKGKRVFVRCDLNVPLDGK ITDDTRIRASVPTIEYLASKGAKVLLTSHLGRPKGKEDK+SL+PVADRLTELLGKKV FV DCIGE V++AVAGL EGDVALLENVRFYPEEEKNV FAEKLAANADLYVNDAFGTAHRAHGSTEGV+KFLKPAVAGFLLQKELDYLDGAVSQPKRPFAAIVGGSKVSTKITVIETLINKVDK+VIGGGMVFTFLKARGHNVGGSLVEEDKLDLAR LE LA +KGVKFILPTDVVIADKFAPDANSKVVA+T IPEGWMGLDNGPESTKMIQAELADCKTIIWNGPMGVFEFDKFAAGTSAIA+T+AELTAKGATTIVGGGDSVAAVEKAGLADKLSHVSTGGGASLELLEGKVLPGVAALNE+
Sbjct: 35 MKITGLVTLLSVASAQAFVAPSFFKAPSAGAMTG--SAAVAEPVCPSTSRRGVMTMAKKSVGSLADADLKGKRVFVRCDLNVPLDGKTITDDTRIRASVPTIEYLASKGAKVLLTSHLGRPKGKEDKFSLSPVADRLTELLGKKVAFVEDCIGEAVSTAVAGLKEGDVALLENVRFYPEEEKNVAEFAEKLAANADLYVNDAFGTAHRAHGSTEGVAKFLKPAVAGFLLQKELDYLDGAVSQPKRPFAAIVGGSKVSTKITVIETLINKVDKLVIGGGMVFTFLKARGHNVGGSLVEEDKLDLARSLEELAKQKGVKFILPTDVVIADKFAPDANSKVVASTEIPEGWMGLDNGPESTKMIQAELADCKTIIWNGPMGVFEFDKFAAGTSAIAETLAELTAKGATTIVGGGDSVAAVEKAGLADKLSHVSTGGGASLELLEGKVLPGVAALNEA 486
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04120.1 ID=NO06G04120.1|Name=NO06G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=3224bp ATTTTTAAATTCCTTTTCCAATGTTATTTAAACTTCACACCGTACAGATA TCCGTTACTTCTTCAAAAGCGTCCCTTCTTGGCCCGAGCCCGCTCGATGA CCGACTCGGCGACGGAGGCAGTGCTGAGGGTAGTGGTCGTTGGTGCCAAG CTCTGGGCGCTCACACTCCCCTTCTTCCTCCCTCGCCACGACGACAAGGA TAAAATCGAGCACGTCTCGGAATTTCCTTGTCGATGCCTGCCTCTATAAA CACTGCCCTTTGGCCTGTAGTCTCGTCCTCGTCCGCTGGTGCTGGTGCTA GTGCTGATGGTGCTAGTATTGCTGATGCTGGTGATGGCTCCACCTGGAAG CTTGCCCAGCGTGAGCGCCGAAAGGCGCGACACATGCGAACCCACTTCTT CATGTTCCGCTTTCCTAACCTCCATTTCCTGCTGCTGCGCCCTCCCTCCC TCCACATACTTCGGACAGACCTCGGCAAAGGCCGTAAACCCGCCCGTCAA CACGAATACGTTCTCCCATCCCCTTTCCACAAGCTGCGTGGCCATCGACG CCGCAAGTCCTGCACGCTCATCGTCATCGTACAAAATAACCAATGTCCTT TCCAGATTCTTGTAGCGGCGCAGCTCTGGAAAGTACTTGTCCTGGTGCAA ATGCGCGTGGGGAAACGGACGGGTGTGGGTAATGACCCCAAGAGTGGGTG TGCTCTCGCCCTCGTCGCGGACATCGAGCAACAAAAAAGGCTTCTCATAC ACAGCATCATCCAGGCTCCCGTGCGTCACTACCAGTGGGCCGCAGCCCTC TGCCTCCTCCAGTGCGTCTTGTGTTCTCATTTCATCGTCGTATTCAAGCA GTAGAGCTCGGAGCTGTCCGGGATTGACCCGACAAAACGTCTCTTGCCGT CGACGCACATACTGCGCGAAAGTCACCACCTTGACCTTGTTTATTGTTGG GCCCGAATTAATTTTGCTGCGCACGTGATGGTATTGCCGTTGGGTGCGAG GCGGCAAAGGCGGCAAAGGCAGTGGTCTCTCGCTGATGGAGGAAGAGGTG GAAGAGGAGGACAAGGCGCGGCGACTCTCGGTCAACCGGGCACGATGCAT GATGTTGATGGACTGTATTGAGAATGACTGAAGTAATCGTGCCTTGGGTC AGTTGATGGAAACCACGGCTTGTGAGGTAAGGTGAAGACGACTTCCCCAA TATTGACGGCGGGCGCAGCACATGAAAATTGCGGTAAACATGGCCCAAAT TGTGCCGGGCCATGGTGCGAGGTAGTGAGTGGTCTCTATGAGCCAAGCTG CAGTCCTCCCTGCTGAAGGCGGCCACAATAAATGCGACTCACACACTTTC CACGCCAAAACAAGCACTTTTGTTGAATAAGGCATGGGCCCGCGGATGCA CATTAAAAGCCCAAAATGTGCCAGCGAAGAAAGTATCCATCCAATTTCTT TTGGGGGTGCGTTGCCTCTGCGTTGCAGCACTACCGTGACCTCTCTCGCC ACCCTTCACCTTCCCGTTTTGCCACGATTCTCGGCATCGAGCGATCTTGG TCTTGTCATCTGTGTTTTGAACACTTTGTGCCTGTGCTTGGCTTCAGCTC TCGGTTTGGGGATCACACCCATTTCCATCCACATTGAACTGCCGAGCCAA CATGATTCGTAGCCTCCTCTCCCCCTGTCCACTCGCGAGCGCAAGCACTG ATCTAACTCGCCCAGCGGGAGTGCCTGCGTGCGCGTTTCTAGATCCTCCA TTTCCTTTGCACACAGCACATGACCATCACTCCCCAACCTTGTCGCCATC ATATTCCAACAGAAGATGAAGTTCACCGGCCTCGTCACGCTCCTGAGCGT CGCCTCTGCGCAAGCCTTTGTGGCCCCCGCCATGTTCAAGGCCGCCTCCG CGGGCTCTCTGACCACGGCCACCTCCGCCGTGACGGCTGCCCCGGTCTGT CCTTCCAACCGACAAGGCGTTGTGACCATGGCTAAGAAGAGCGTGTCCTC CCTGAGCGACGCGGAGCTCAAGGGCAAGCGTGTGTTTGTGCGTTGCGACT TGAACGTGCCCCTTGACGGAAAGAAGATCACGGACGACACCCGTATCCGT GCGTCGGTGCCCACCATCGAGTACCTGGCCTCCAAGGGCGCCAAGGTCCT CCTCACCTCCCACTTGGGCCGACCCAAGGGCAAGGAGGACAAGTACTCCC TGGCCCCCGTGGCTGATCGCCTGACCGAGCTCTTGGGCAAGAAGGTGACT TTCGTCCCGGACTGCATCGGCGAGACTGTCACCAGCGCCGTCGCTGGCCT TGCGGAAGGAGATGTTGCTCTCCTGGAGAACGTCCGCTTCTACCCCGAGG AGGAGAAGAATGTGCCTGCCTTCGCTGAGAAGCTGGCTGCCAACGCTGAC TTGTACGTGAACGATGCCTTCGGCACGGCCCACCGCGCTCACGGCTCCAC TGAGGGTGTCTCCAAGTTCCTCAAGCCCGCTGTCGCCGGTTTCCTTCTCC AGAAGGAGCTCGACTACCTTGACGGCGCCGTCTCCCAGCCCAAGCGCCCC TTCGCCGCCATCGTTGGCGGGTCTAAGGTCTCCACCAAGATCACTGTGAT TGAGACGCTCATCAACAAGGTCGACAAGATCGTCATCGGCGGCGGCATGG TCTTTACCTTCCTGAAGGCCCGTGGACACAACGTCGGCGGCTCCCTCGTC GAGGAGGACAAGCTCGACTTGGCCCGTGAGTTGGAGGCCCTCGCCGCGAA GAAAGGCGTCAAATTCATCCTGCCCACGGACGTGGTCATCGCCGACAAAT TTGCTCCGGACGCCAACAGCAAGGTGGTGGCTGCCACTGCCATCCCGGAG GGGTGGATGGGCCTTGACAACGGCCCCGAGTCGACCAAGATGATCCAGGC GGAGCTCGCGGACTGCAAGACCATCATCTGGAACGGTCCCATGGGCGTGT TTGAGTTCGACAAATTCGCCGCAGGCACCAGCGCGATCGCCCAGACTATG GCGGAGCTCACTGCCAAGGGCGCTACCACCATCGTCGGCGGCGGTGACTC GGTGGCTGCTGTCGAAAAGGCCGGCCTGGCCGACAAGCTCTCCCACGTCT CCACCGGCGGGGGTGCTTCCTTGGAGCTGCTCGAGGGCAAGGTGCTCCCC GGTGTGGCGGCCCTCAACGAGTCTTAAGTCTCTTTCTAGATGGAGGAGCG AGGGAGGGAGGGAGGGAGGGAGGG back to topprotein sequence of NO06G04120.1 >NO06G04120.1-protein ID=NO06G04120.1-protein|Name=NO06G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp MKFTGLVTLLSVASAQAFVAPAMFKAASAGSLTTATSAVTAAPVCPSNRQ GVVTMAKKSVSSLSDAELKGKRVFVRCDLNVPLDGKKITDDTRIRASVPT IEYLASKGAKVLLTSHLGRPKGKEDKYSLAPVADRLTELLGKKVTFVPDC IGETVTSAVAGLAEGDVALLENVRFYPEEEKNVPAFAEKLAANADLYVND AFGTAHRAHGSTEGVSKFLKPAVAGFLLQKELDYLDGAVSQPKRPFAAIV GGSKVSTKITVIETLINKVDKIVIGGGMVFTFLKARGHNVGGSLVEEDKL DLARELEALAAKKGVKFILPTDVVIADKFAPDANSKVVAATAIPEGWMGL DNGPESTKMIQAELADCKTIIWNGPMGVFEFDKFAAGTSAIAQTMAELTA KGATTIVGGGDSVAAVEKAGLADKLSHVSTGGGASLELLEGKVLPGVAAL NES* back to topmRNA from alignment at chr6:1153826..1157523- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04120.1 ID=NO06G04120.1|Name=NO06G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=3698bp|location=Sequence derived from alignment at chr6:1153826..1157523- (Nannochloropsis oceanica) ATTTTTAAATTCCTTTTCCAATGTTATTTAAACTTCACACCGTACAGATA
TCCGTTACTTCTTCAAAAGCGTCCCTTCTTGGCCCGAGCCCGCTCGATGA
CCGACTCGGCGACGGAGGCAGTGCTGAGGGTAGTGGTCGTTGGTGCCAAG
CTCTGGGCGCTCACACTCCCCTTCTTCCTCCCTCGCCACGACGACAAGGA
TAAAATCGAGCACGTCTCGGAATTTCCTTGTCGATGCCTGCCTCTATAAA
CACTGCCCTTTGGCCTGTAGTCTCGTCCTCGTCCGCTGGTGCTGGTGCTA
GTGCTGATGGTGCTAGTATTGCTGATGCTGGTGATGGCTCCACCTGGAAG
CTTGCCCAGCGTGAGCGCCGAAAGGCGCGACACATGCGAACCCACTTCTT
CATGTTCCGCTTTCCTAACCTCCATTTCCTGCTGCTGCGCCCTCCCTCCC
TCCACATACTTCGGACAGACCTCGGCAAAGGCCGTAAACCCGCCCGTCAA
CACGAATACGTTCTCCCATCCCCTTTCCACAAGCTGCGTGGCCATCGACG
CCGCAAGTCCTGCACGCTCATCGTCATCGTACAAAATAACCAATGTCCTT
TCCAGATTCTTGTAGCGGCGCAGCTCTGGAAAGTACTTGTCCTGGTGCAA
ATGCGCGTGGGGAAACGGACGGGTGTGGGTAATGACCCCAAGAGTGGGTG
TGCTCTCGCCCTCGTCGCGGACATCGAGCAACAAAAAAGGCTTCTCATAC
ACAGCATCATCCAGGCTCCCGTGCGTCACTACCAGTGGGCCGCAGCCCTC
TGCCTCCTCCAGTGCGTCTTGTGTTCTCATTTCATCGTCGTATTCAAGCA
GTAGAGCTCGGAGCTGTCCGGGATTGACCCGACAAAACGTCTCTTGCCGT
CGACGCACATACTGCGCGAAAGTCACCACCTTGACCTTGTTTATTGTTGG
GCCCGAATTAATTTTGCTGCGCACGTGATGGTATTGCCGTTGGGTGCGAG
GCGGCAAAGGCGGCAAAGGCAGTGGTCTCTCGCTGATGGAGGAAGAGGTG
GAAGAGGAGGACAAGGCGCGGCGACTCTCGGTCAACCGGGCACGATGCAT
GATGTTGATGGACTGTATTGAGAATGACTGAAGTAATCGTGCCTTGGGTC
AGTTGATGGAAACCACGGCTTGTGAGGTAAGGTGAAGACGACTTCCCCAA
TATTGACGGCGGGCGCAGCACATGAAAATTGCGGTAAACATGGCCCAAAT
TGTGCCGGGCCATGGTGCGAGGTAGTGAGTGGTCTCTATGAGCCAAGCTG
CAGTCCTCCCTGCTGAAGGCGGCCACAATAAATGCGACTCACACACTTTC
CACGCCAAAACAAGCACTTTTGTTGAATAAGGCATGGGCCCGCGGATGCA
CATTAAAAGCCCAAAATGTGCCAGCGAAGAAAGTATCCATCCAATTTCTT
TTGGGGGTGCGTTGCCTCTGCGTTGCAGCACTACCGTGACCTCTCTCGCC
ACCCTTCACCTTCCCGTTTTGCCACGATTCTCGGCATCGAGCGATCTTGG
TCTTGTCATCTGTGTTTTGAACACTTTGTGCCTGTGCTTGGCTTCAGCTC
TCGGTTTGGGGATCACACCCATTTCCATCCACATTGAACTGCCGAGCCAA
CATGATTCGTAGCCTCCTCTCCCCCTGTCCACTCGCGAGCGCAAGCACTG
ATCTAACTCGCCCAGCGGGAGTGCCTGCGTGCGCGTTTCTAGATCCTCCA
TTTCCTTTGCACACAGCACATGACCATCACTCCCCAACCTTGTCGCCATC
ATATTCCAACAGAAGATGAAGTTCACCGGCCTCGTCACGCTCCTGAGCGT
CGCCTCTGCGCAAGGTAAGCCAAAGGAGGGATAGAAAGGAGGGGAGACCG
TACTGAATTTTGGATCTGAGAACAACAGCAAGAAGAAAAACCAAGCCAAA
AAGCAAGCCTCTTACATTGCCTCACAACTCCCAACTCCCCACACACCAAC
CACACCCACAGCCTTTGTGGCCCCCGCCATGTTCAAGGCCGCCTCCGCGG
GCTCTCTGACCACGGCCACCTCCGCCGTGACGGCTGCCCCGGTCTGTCCT
TCCAACCGACAAGGCGTTGTGACCATGGCTAAGAAGAGCGTGTCCTCCCT
GAGCGACGCGGAGCTCAAGGGCAAGCGTGTGTTTGTGCGTTGCGACTTGA
ACGTGCCCCTTGACGGAAAGAAGATCACGGACGACACCCGTATCCGTGCG
TCGGTGCCCACCATCGAGTACCTGGCCTCCAAGGGCGCCAAGGTCCTCCT
CACCTCCCACTTGGGCCGACCCAAGGGCAAGGAGGACAAGTACTCCCTGG
CCCCCGTGGCTGATCGCCTGACCGAGCTCTTGGGCAAGAAGGTGACTTTC
GTCCCGGACTGCATCGGCGAGACTGTCACCAGCGCCGTCGCTGGCCTTGC
GGAAGGAGATGTTGCTCTCCTGGAGAACGTCCGCTTCTACCCCGAGGAGG
AGAAGAATGTGCCTGCCTTCGCTGAGAAGCTGGCTGCCAACGCTGACTTG
TACGTGAACGATGCCTTCGGCACGGCCCACCGCGCTCACGGCTCCACTGA
GGGTGTCTCCAAGTTCCTCAAGCCCGCTGTCGCCGGTTTCCTTCTCCAGA
AGGAGCTCGACTACCTTGACGGCGCCGTCTCCCAGCCCAAGCGCCCCTTC
GCCGCCATCGTTGGCGGGTCTAAGGTATGATCTCGAGGGTGGGAAAGAGG
GAGGATCGATGGTGGTGCCCCGTGGGGGCGTTGTCTGTCGGTCAGCCCTT
ACCCTCACTCTCACGCTTCCTCCCTCTCTCGTTTACTCTCTTGCCCGTTT
CTTTTCCTTTCATCCAGGTCTCCACCAAGATCACTGTGATTGAGACGCTC
ATCAACAAGGTCGACAAGATCGTCATCGGCGGCGGCATGGTCTTTACCTT
CCTGAAGGCCCGTGGACACAACGTGAGTCCCCCTCATGCCCTCCCTCTCT
CCCTCCCTCTCTCACTTCCTCCTTTCTTCCCTATCAAACTTTTTTGACCC
TCCATACACCTACCTGCCCACTACCACACCCACAATCTTTGCCTTGAATC
CTTCCCCCCTCCTCCTTCCCCCCCTCCTCCTTCCCCCTTCCCCCCCTCCT
CCTCAGGTCGGCGGCTCCCTCGTCGAGGAGGACAAGCTCGACTTGGCCCG
TGAGTTGGAGGCCCTCGCCGCGAAGAAAGGCGTCAAATTCATCCTGCCCA
CGGACGTGGTCATCGCCGACAAATTTGCTCCGGACGCCAACAGCAAGGTG
GTGGCTGCCACTGCCATCCCGGAGGGGTGGATGGGCCTTGACAACGGCCC
CGAGTCGACCAAGATGATCCAGGCGGAGCTCGCGGACTGCAAGACCATCA
TCTGGAACGGTCCCATGGGCGTGTTTGAGTTCGACAAATTCGCCGCAGGC
ACCAGCGCGATCGCCCAGACTATGGCGGAGCTCACTGCCAAGGGCGCTAC
CACCATCGTCGGCGGCGGTGACTCGGTGGCTGCTGTCGAAAAGGCCGGCC
TGGCCGACAAGCTCTCCCACGTCTCCACCGGCGGGGGTGCTTCCTTGGAG
CTGCTCGAGGGCAAGGTGCTCCCCGGTGTGGCGGCCCTCAACGAGTCTTA
AGTCTCTTTCTAGATGGAGGAGCGAGGGAGGGAGGGAGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at chr6:1153826..1157523- >NO06G04120.1 ID=NO06G04120.1|Name=NO06G04120.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr6:1153826..1157523- (Nannochloropsis oceanica) ATGAAGTTCACCGGCCTCGTCACGCTCCTGAGCGTCGCCTCTGCGCAAGC CTTTGTGGCCCCCGCCATGTTCAAGGCCGCCTCCGCGGGCTCTCTGACCA CGGCCACCTCCGCCGTGACGGCTGCCCCGGTCTGTCCTTCCAACCGACAA GGCGTTGTGACCATGGCTAAGAAGAGCGTGTCCTCCCTGAGCGACGCGGA GCTCAAGGGCAAGCGTGTGTTTGTGCGTTGCGACTTGAACGTGCCCCTTG ACGGAAAGAAGATCACGGACGACACCCGTATCCGTGCGTCGGTGCCCACC ATCGAGTACCTGGCCTCCAAGGGCGCCAAGGTCCTCCTCACCTCCCACTT GGGCCGACCCAAGGGCAAGGAGGACAAGTACTCCCTGGCCCCCGTGGCTG ATCGCCTGACCGAGCTCTTGGGCAAGAAGGTGACTTTCGTCCCGGACTGC ATCGGCGAGACTGTCACCAGCGCCGTCGCTGGCCTTGCGGAAGGAGATGT TGCTCTCCTGGAGAACGTCCGCTTCTACCCCGAGGAGGAGAAGAATGTGC CTGCCTTCGCTGAGAAGCTGGCTGCCAACGCTGACTTGTACGTGAACGAT GCCTTCGGCACGGCCCACCGCGCTCACGGCTCCACTGAGGGTGTCTCCAA GTTCCTCAAGCCCGCTGTCGCCGGTTTCCTTCTCCAGAAGGAGCTCGACT ACCTTGACGGCGCCGTCTCCCAGCCCAAGCGCCCCTTCGCCGCCATCGTT GGCGGGTCTAAGGTCTCCACCAAGATCACTGTGATTGAGACGCTCATCAA CAAGGTCGACAAGATCGTCATCGGCGGCGGCATGGTCTTTACCTTCCTGA AGGCCCGTGGACACAACGTCGGCGGCTCCCTCGTCGAGGAGGACAAGCTC GACTTGGCCCGTGAGTTGGAGGCCCTCGCCGCGAAGAAAGGCGTCAAATT CATCCTGCCCACGGACGTGGTCATCGCCGACAAATTTGCTCCGGACGCCA ACAGCAAGGTGGTGGCTGCCACTGCCATCCCGGAGGGGTGGATGGGCCTT GACAACGGCCCCGAGTCGACCAAGATGATCCAGGCGGAGCTCGCGGACTG CAAGACCATCATCTGGAACGGTCCCATGGGCGTGTTTGAGTTCGACAAAT TCGCCGCAGGCACCAGCGCGATCGCCCAGACTATGGCGGAGCTCACTGCC AAGGGCGCTACCACCATCGTCGGCGGCGGTGACTCGGTGGCTGCTGTCGA AAAGGCCGGCCTGGCCGACAAGCTCTCCCACGTCTCCACCGGCGGGGGTG CTTCCTTGGAGCTGCTCGAGGGCAAGGTGCTCCCCGGTGTGGCGGCCCTC AACGAGTCTTAA back to top
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