NO06G04100.1, NO06G04100.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G04100.1
Unique Name	NO06G04100.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2116
Alignment location	chr6:1146607..1150039 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1146607..1150039 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO06G04100.1 vs.
Match: CBJ27053.1 (Ribonucleoside-diphosphate reductase small chain [Ectocarpus siliculosus])

HSP 1 Score: 500.0 bits (1286), Expect = 9.000e-138
Identity = 268/433 (61.89%), Postives = 310/433 (71.59%), Query Frame = 0

Query:   94 GGASEGEGTRKNEVGKEGSGFATPLVRGGMTRLTKEGRKDGMGMEEAEDRLGGGGGEGGGRAEAAVKQSPAPQPAAAAAASGTVM------GKEEARKVEGEWVEPICRNDPSRFVLFPMKHPDLWEMYKRHEASFWTAEEVDLSQDMGDWQRLTPSEKHFVSMVLAFFASSDGIVMENLAHRFCREVQVTEARCFYGFQITMESIHQETYALLLDTYIKDPEEKAKLFNAYAEIPCIKKKASWAMRWIGSQASFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSKLERTQLSRERVLEIIKEAVEVEQGFVCEALPCSLIGMNKDMMSTYILYVADRLLVALGYEKHYNVQNPFEWMELISLQGKTNFFEKRVGEYQKAGVMSKYNKSGGAGGVAPRTFSTDADF 521
            G A+ G G      G+E        V GG+     E         +A D            A A  +++P  +        G V        KE AR V   +VEPICR DPSRFVLFP+KHP+LW+MYK+ +ASFWT EEVDLSQD  DW+ LT +E+HF+SMVLAFFA+SDGIVMENL  RF +EVQ+ EARCFYGFQI MESIHQE YALLLDTYIKD +E+  LFNAY +IPC+K+KA WAMRWIGS A+FAERLVAFAAVEG+FFSGSFCAIFWLKKRGLMPGLTFSNE+ISRDEGLHCDFAC L++ LE  + SRE V+ I++EAVEVE+ F+C ALPCSLIGMN  +MS YI +VADRLL +LGY K Y  QNPF+WM+LISLQGKTNFFEKRVGEYQKAGVM      GG  G   R F  DADF
Sbjct:   88 GVATSGVGAGVRSRGEE--------VGGGVVWREAEATASSPSSSQATDT-EVNAARSASPAVAIAEKTPLERDGGVVGVGGAVGVGSAVGAKEAARGVP--FVEPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWEALTGNEQHFISMVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKQERDNLFNAYNDIPCVKQKADWAMRWIGSDATFAERLVAFAAVEGVFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACQLFASLE-NKPSRETVMAIVREAVEVEKSFICGALPCSLIGMNAGVMSQYIEFVADRLLGSLGYGKSYGTQNPFDWMDLISLQGKTNFFEKRVGEYQKAGVMG----GGGGPGEDRRNFRLDADF 504

The following BLAST results are available for this feature:

BLAST of NO06G04100.1 vs.

BLAST of NO06G04100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ27053.1	9.000e-138	61.89	Ribonucleoside-diphosphate reductase small chain [...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G04100	NO06G04100	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G04100.1	NO06G04100.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G04100.1.cds1	NO06G04100.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04100.1.cds2	NO06G04100.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04100.1.cds3	NO06G04100.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04100.1.cds4	NO06G04100.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04100.1.cds5	NO06G04100.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04100.1.cds6	NO06G04100.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04100.1.cds7	NO06G04100.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04100.1.cds8	NO06G04100.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04100.1.cds9	NO06G04100.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:1146607..1150039-
coding sequence from alignment at chr6:1146607..1150039-

mRNA sequence

>NO06G04100.1 ID=NO06G04100.1|Name=NO06G04100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp
TTCTTTTTGTGGAAAATCCCTGGGACACAAGCGTAACATAAATACAAACA
CCTTACACCCTTCCGTGTATTGTTGACTTTCAAATACAAGCATACGTGAA
TATCGGCAGGTAGTCTCTGCGACAGTCCATCAAGTCTAAGACGTGAGAGC
CGTCCGTCCACTAAAGCGAGCGCGCGGGCTGAAGCAAGCGCACGATGATA
AGGAAGAATTTCACCCACTACGGGTTGGCGTGGTCGGCTATGCCACATTG
TCCGACTGTATATCGTTCTCAAGAGCGGTAAAATTCCAGGCCTAGCGCCG
TGCTGTAGTGTGCGGTTAATGGCCAGCGCGTTTCGTTCACACGTTCGCTC
AAGCCGCGAAGTCAAGTGGAAGAAGAAGGTCATGACCAAACAAGCAGACT
CGGACTAGACCTGTCGCGTAGCCGCCCAATATGCCGTATCAATTCTTCTC
GAACTGCTTCACCCATTCTATCCCCCTCTATTCCACGCACCCAAACCACA
GCCAGACATAGCAACTATGAGTCGCGACGACCACCAAGAGCAGCAACAGC
AGCCGCCGCAGCACCATGAAGAGCACCAGCAGCAGCAAAGGAGATGGAGG
CGCCGCCCAGCCCGGTCCAGCGTCATCTTTACCACCGCGGCTACTGTTGC
ACTCTCGTGCCTCTGCAGTCCGTCCACCTCCTCCTCGCCCTTTCTTTTCG
CCTGTGCTACCGCGGCACCCAACAAGCCATCAAATCAGCAGCAGCACTCA
TTACCACCACTGTCACCATTTTCTTTTCGCCTACACAAGCTGAAGGGCGG
CGCCAGTGAAGGGGAGGGTACAAGGAAGAATGAGGTAGGGAAGGAGGGCT
CAGGTTTTGCCACACCACTGGTGCGAGGCGGGATGACACGACTGACGAAA
GAAGGGAGAAAGGATGGCATGGGGATGGAAGAAGCGGAAGACCGGTTAGG
GGGAGGAGGAGGAGAGGGAGGGGGACGAGCAGAAGCAGCAGTGAAGCAAT
CACCAGCCCCACAACCAGCAGCAGCAGCTGCAGCATCCGGAACGGTGATG
GGGAAAGAGGAAGCGAGGAAGGTGGAGGGGGAATGGGTTGAGCCAATCTG
TCGAAACGATCCCTCCCGATTCGTGTTGTTCCCGATGAAGCACCCGGACC
TATGGGAGATGTACAAGAGGCACGAGGCCAGTTTTTGGACGGCGGAGGAG
GTGGATTTGAGCCAGGACATGGGTGACTGGCAGAGATTGACCCCGTCGGA
GAAGCATTTTGTGAGCATGGTACTTGCCTTCTTCGCCTCCTCGGACGGCA
TTGTAATGGAGAATCTGGCCCACCGCTTCTGTCGGGAAGTGCAGGTGACG
GAGGCCCGGTGTTTTTACGGCTTTCAGATCACGATGGAGAGCATCCACCA
GGAGACATACGCCCTCCTCCTCGACACGTACATCAAGGACCCCGAGGAGA
AAGCGAAGCTTTTCAACGCCTATGCTGAGATTCCCTGCATCAAGAAGAAA
GCCTCATGGGCCATGCGCTGGATCGGGAGCCAGGCCTCGTTTGCCGAGCG
ACTGGTGGCCTTCGCAGCTGTGGAGGGAATCTTTTTCTCGGGCTCCTTTT
GCGCCATTTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGACTGACTTTC
TCGAACGAGCTCATCTCCCGCGATGAGGGCTTGCACTGCGACTTTGCTTG
CCTCCTCTACTCCAAACTAGAACGGACACAGCTGAGTCGGGAGCGTGTGT
TGGAGATCATTAAGGAGGCGGTGGAGGTGGAGCAAGGCTTTGTCTGCGAG
GCCTTACCCTGCTCCTTGATCGGGATGAACAAAGACATGATGTCCACCTA
CATCCTTTATGTCGCCGACCGCCTCTTGGTGGCTCTAGGGTACGAGAAAC
ACTACAATGTCCAGAACCCCTTTGAGTGGATGGAGCTCATTTCGCTGCAG
GGCAAGACCAATTTTTTCGAAAAGCGCGTGGGGGAGTACCAGAAAGCGGG
CGTCATGTCTAAATATAACAAGAGCGGAGGGGCAGGAGGCGTCGCCCCCA
GGACATTCAGCACTGACGCGGATTTTTAAGGGAGGGAAGGAGGGCGGGAG
GGAGGGAAGAGGGGAG

protein sequence of NO06G04100.1

>NO06G04100.1-protein ID=NO06G04100.1-protein|Name=NO06G04100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MSRDDHQEQQQQPPQHHEEHQQQQRRWRRRPARSSVIFTTAATVALSCLC
SPSTSSSPFLFACATAAPNKPSNQQQHSLPPLSPFSFRLHKLKGGASEGE
GTRKNEVGKEGSGFATPLVRGGMTRLTKEGRKDGMGMEEAEDRLGGGGGE
GGGRAEAAVKQSPAPQPAAAAAASGTVMGKEEARKVEGEWVEPICRNDPS
RFVLFPMKHPDLWEMYKRHEASFWTAEEVDLSQDMGDWQRLTPSEKHFVS
MVLAFFASSDGIVMENLAHRFCREVQVTEARCFYGFQITMESIHQETYAL
LLDTYIKDPEEKAKLFNAYAEIPCIKKKASWAMRWIGSQASFAERLVAFA
AVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSK
LERTQLSRERVLEIIKEAVEVEQGFVCEALPCSLIGMNKDMMSTYILYVA
DRLLVALGYEKHYNVQNPFEWMELISLQGKTNFFEKRVGEYQKAGVMSKY
NKSGGAGGVAPRTFSTDADF*

mRNA from alignment at chr6:1146607..1150039-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G04100.1 ID=NO06G04100.1|Name=NO06G04100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3433bp|location=Sequence derived from alignment at chr6:1146607..1150039- (Nannochloropsis oceanica)
TTCTTTTTGTGGAAAATCCCTGGGACACAAGCGTAACATAAATACAAACA
CCTTACACCCTTCCGTGTATTGTTGACTTTCAAATACAAGCATACGTGAA
TATCGGCAGGTAGTCTCTGCGACAGTCCATCAAGTCTAAGACGTGAGAGC
CGTCCGTCCACTAAAGCGAGCGCGCGGGCTGAAGCAAGCGCACGATGATA
AGGAAGAATTTCACCCACTACGGGTTGGCGTGGTCGGCTATGCCACATTG
TCCGACTGTATATCGTTCTCAAGAGCGGTAAAATTCCAGGCCTAGCGCCG
TGCTGTAGTGTGCGGTTAATGGCCAGCGCGTTTCGTTCACACGTTCGCTC
AAGCCGCGAAGTCAAGTGGAAGAAGAAGGTCATGACCAAACAAGCAGACT
CGGACTAGACCTGTCGCGTAGCCGCCCAATATGCCGTATCAATTCTTCTC
GAACTGCTTCACCCATTCTATCCCCCTCTATTCCACGCACCCAAACCACA
GCCAGACATAGCAACTATGAGTCGCGACGACCACCAAGAGCAGCAACAGC
AGCCGCCGCAGCACCATGAAGAGCACCAGCAGCAGCAAAGGAGATGGAGG
CGCCGCCCAGCCCGGTCCAGCGTCATCTTTACCACCGCGGCTACTGTTGC
ACTCTCGTGCCTCTGCAGTCCGTCCACCTCCTCCTCGCCCTTTCTTTTCG
CCTGTGCTACCGCGGCACCCAACAAGCCATCAAATCAGCAGCAGCACTCA
TTACCACCACTGTCACCATTTTCTTTTCGCCTACACAAGCTGAAGGGCGG
CGCCAGTGAAGGGGAGGGTACAAGGAAGAATGAGGTAGGGAAGGAGGGCT
CAGGTTTTGCCACACCACTGGTGCGAGGCGGGATGACACGACTGACGAAA
GAAGGGAGAAAGGATGGCATGGGGATGGAAGAAGCGGAAGACCGGTTAGG
GGGAGGAGGAGGAGAGGGAGGGGGACGAGCAGAAGCAGCAGTGAAGCAAT
CACCAGCCCCACAACCAGCAGCAGCAGCTGCAGCATCCGGAACGGTGATG
GGGAAAGAGGAAGCGAGGAAGGTGGAGGGGGAATGGGTTGAGCCAATCTG
TCGAAACGATCCCTCCCGATTCGTGTTGTTCCCGATGAAGCACCCGGACC
TATGGGAGATGTACAAGAGGCACGAGGCCAGTTTTTGGACGGCGGAGGAG
GTGGATTTGAGCCAGGACATGGGTGACTGGCAGGTAAGGAGAGAGGGAGG
GAAGGAGGGAGGGAAGGAAGAAGGGAGGGAGGGAGGGAAGGAGGGAAGGA
GAGAGGGAGGGCAGGGTCTCCAGGCACTCAAGAGACGAAGAAAAACTCCG
CTCACGCTCAGCGCCGAACGGAATTCCTCTTCTCCCCCTCCCTCCGTCCG
TCCCGTTCCGTGCAGAGATTGACCCCGTCGGAGAAGCATTTTGTGAGCAT
GGTACTTGCCTTCTTCGCCTCCTCGGACGGCATTGTAATGGAGAATCTGG
CCCACCGCTTCTGTCGGGAAGTGCAGGTGAAGAAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGATTGGACGTTAAAACACGGGCGT
TCTAGAAGGCGACTGCGGGTGCCTGTCGACGGCGTCTTCCATCATAACAT
TTCCCTCTCTTTTTTTCACCTCAACCCCCTTCCTTCCTCCCTCCCTCTTT
TCCCAGGTGACGGAGGCCCGGTGTTTTTACGGCTTTCAGATCACGATGGA
GAGCATCCACCAGGAGACATACGCCCTCCTCCTCGACACGTACATCAAGG
TGCGACCACCTTGCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCTT
GGTGTCTAGATGGATAGATGGATGGCAGCACATTCACGTTTCGACCTACC
TCCATTCCTTTCCCTGTCCTTCCCTCCCTCCCTCCCTCCTTCCCCCCTCC
CTAATGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTATGCCCTCCCTCCTTCCCTCCCTCCCCAGGACCCCGAGGAGAAAG
CGAAGCTTTTCAACGCCTATGCTGAGATTCCCTGCATCAAGAAGAAAGCC
TCATGGGCCATGCGCTGGATCGGGAGCCAGGCCTCGTTTGCCGAGCGACT
GGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGGAGC
GAGGGAGGGCGTGGAGGGCGGATTTCTTTTCGTGATTTAACCACTCCATG
TGTGCTTCGTCGACGGCTGATCGATCTCCCTCCCTCCCTCTTTCCCTTCT
TTCCTCCCTCCCTCCCTCCCTCACCTATCAGGTGGCCTTCGCAGCTGTGG
AGGGAATCTTTTTCTCGGGCTCCTTTTGCGCCATTTTCTGGCTGAAGAAG
CGAGGGCTCATGCCGGTTAGTAGTGGGTCCTCGGGAGGGAAGGAGGCAGG
GAAGGAGGGAGGGAGGGAGAGAAGGAGAATCGCTTCCAACTCATGTCGCC
CGACGATGACGCCCCCTACGGCAGGGACTGACTTTCTCGAACGAGCTCAT
CTCCCGCGATGAGGGCTTGCACTGCGACTTTGCTTGCCTCCTCTACTCCA
AACTAGAACGGACACAGCTGGTAGGCACTCGACCCCTTCCTCCCTCCCTC
CCTCCTTCCTCCCCTCCCTCCCTGTTCATCATCCTCCTTCTTTCCGCACT
TGTTGCGCCTCTCAACCAAGCCATCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTTCCACGCCAAATCAATCAGAGTCGGGAGCGTGTGTTGGAGATC
ATTAAGGAGGCGGTGGAGGTGGAGCAAGGCTTTGTCTGCGAGGCCTTACC
CTGCTCCTTGATCGGGATGAACAAAGACATGATGTCCACCTACATCCTTT
ATGTCGCCGACCGCCTCTTGGTAAGGAGGGAGGGGGGGAGGAAGTGAGGG
AAGGAGAGGCCCTAGTCTCGTATGTGCTGATCGTTCTCTTCCTTGCTATG
TTCCTTCTTCGCGCATTTTTTTTTTTTTTCAGGTGGCTCTAGGGTACGAG
AAACACTACAATGTCCAGAACCCCTTTGAGTGGATGGAGCTCATTTCGCT
GCAGGTGCGTTCTACCCTCCCTCCCTCCCCCCCCTCCCTCCCTCCTTCTG
CCACCACGGACAAGCCCAACTTCGCCGAGCGAGGTGTCGGAGATATTCAA
AGTGCCTGTTATCATGAAACATCCTAAAAAGGCCTCCCTCCCTCCCTCCC
TCCCACGTCCATCTCAGGGCAAGACCAATTTTTTCGAAAAGCGCGTGGGG
GAGTACCAGAAAGCGGGCGTCATGTCTAAATATAACAAGAGCGGAGGGGC
AGGAGGCGTCGCCCCCAGGACATTCAGCACTGACGCGGATTTTTAAGGGA
GGGAAGGAGGGCGGGAGGGAGGGAAGAGGGGAG

Coding sequence (CDS) from alignment at chr6:1146607..1150039-

>NO06G04100.1 ID=NO06G04100.1|Name=NO06G04100.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr6:1146607..1150039- (Nannochloropsis oceanica)
ATGAGTCGCGACGACCACCAAGAGCAGCAACAGCAGCCGCCGCAGCACCA
TGAAGAGCACCAGCAGCAGCAAAGGAGATGGAGGCGCCGCCCAGCCCGGT
CCAGCGTCATCTTTACCACCGCGGCTACTGTTGCACTCTCGTGCCTCTGC
AGTCCGTCCACCTCCTCCTCGCCCTTTCTTTTCGCCTGTGCTACCGCGGC
ACCCAACAAGCCATCAAATCAGCAGCAGCACTCATTACCACCACTGTCAC
CATTTTCTTTTCGCCTACACAAGCTGAAGGGCGGCGCCAGTGAAGGGGAG
GGTACAAGGAAGAATGAGGTAGGGAAGGAGGGCTCAGGTTTTGCCACACC
ACTGGTGCGAGGCGGGATGACACGACTGACGAAAGAAGGGAGAAAGGATG
GCATGGGGATGGAAGAAGCGGAAGACCGGTTAGGGGGAGGAGGAGGAGAG
GGAGGGGGACGAGCAGAAGCAGCAGTGAAGCAATCACCAGCCCCACAACC
AGCAGCAGCAGCTGCAGCATCCGGAACGGTGATGGGGAAAGAGGAAGCGA
GGAAGGTGGAGGGGGAATGGGTTGAGCCAATCTGTCGAAACGATCCCTCC
CGATTCGTGTTGTTCCCGATGAAGCACCCGGACCTATGGGAGATGTACAA
GAGGCACGAGGCCAGTTTTTGGACGGCGGAGGAGGTGGATTTGAGCCAGG
ACATGGGTGACTGGCAGAGATTGACCCCGTCGGAGAAGCATTTTGTGAGC
ATGGTACTTGCCTTCTTCGCCTCCTCGGACGGCATTGTAATGGAGAATCT
GGCCCACCGCTTCTGTCGGGAAGTGCAGGTGACGGAGGCCCGGTGTTTTT
ACGGCTTTCAGATCACGATGGAGAGCATCCACCAGGAGACATACGCCCTC
CTCCTCGACACGTACATCAAGGACCCCGAGGAGAAAGCGAAGCTTTTCAA
CGCCTATGCTGAGATTCCCTGCATCAAGAAGAAAGCCTCATGGGCCATGC
GCTGGATCGGGAGCCAGGCCTCGTTTGCCGAGCGACTGGTGGCCTTCGCA
GCTGTGGAGGGAATCTTTTTCTCGGGCTCCTTTTGCGCCATTTTCTGGCT
GAAGAAGCGAGGGCTCATGCCGGGACTGACTTTCTCGAACGAGCTCATCT
CCCGCGATGAGGGCTTGCACTGCGACTTTGCTTGCCTCCTCTACTCCAAA
CTAGAACGGACACAGCTGAGTCGGGAGCGTGTGTTGGAGATCATTAAGGA
GGCGGTGGAGGTGGAGCAAGGCTTTGTCTGCGAGGCCTTACCCTGCTCCT
TGATCGGGATGAACAAAGACATGATGTCCACCTACATCCTTTATGTCGCC
GACCGCCTCTTGGTGGCTCTAGGGTACGAGAAACACTACAATGTCCAGAA
CCCCTTTGAGTGGATGGAGCTCATTTCGCTGCAGGGCAAGACCAATTTTT
TCGAAAAGCGCGTGGGGGAGTACCAGAAAGCGGGCGTCATGTCTAAATAT
AACAAGAGCGGAGGGGCAGGAGGCGTCGCCCCCAGGACATTCAGCACTGA
CGCGGATTTTTAA

Synonyms

Publications