NO06G04080.1, NO06G04080.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G04080.1
Unique Name	NO06G04080.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2300
Alignment location	chr6:1139019..1142053 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1139019..1142053 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO06G04080.1 vs.
Match: EWM26403.1 (ubiquinone menaquinone biosynthesis methyltransferase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 380.2 bits (975), Expect = 1.000e-101
Identity = 197/282 (69.86%), Postives = 223/282 (79.08%), Query Frame = 0

Query:  223 RPSPALADGERVARRPGKGEIDALLEG-SEEELWPDVDPPYQKSDFARLDETDDGLFYDEPKLVEHIDKAAVQAMTKYYQQMLEEVGLDMYGDKTRPLDILDVGASWVSHLPSSYTPARTTTTGSSSSSSSSRVAGLGMNAEELKLNPQLTEFTVCDLNKTPRLPYDDASFDVVVCALTIDYLTRPISVCREMTRVLRPRGRVCIVFSNRLFFTKAVANWAGKDDVDHVLDVASYLHYASAGGGGMEGGRAEVGRLDKPKARDVSPTPTKGDPLYVVWANKL 504
            RP  A A GE+ ARRPGKGEID LLEG SEE LWP+  PPY KSDFARLDETDD LFYD PKLVEHIDKAAV++++ YY++  +EVG  +YG+  R LDILDVGASWVSH P SYT A+    G        RVAGLGM+AEEL LNPQLTEFTV DLNK PRLPY D SFD+VV ALTIDYL RPI++CREM RVLRP GRVC++FSNRLFFTKAVANWAGKDDVDHVLDVA+YLHYA+   G   G +     L KP A+D+SP+PTKGDPLYVVWA++L
Sbjct:   12 RPRAAQASGEQ-ARRPGKGEIDGLLEGKSEEALWPEPLPPYVKSDFARLDETDDALFYDTPKLVEHIDKAAVRSLSAYYRETFQEVGDRLYGESGRLLDILDVGASWVSHFPPSYTRAQEAD-GQDPLGMRCRVAGLGMSAEELALNPQLTEFTVQDLNKNPRLPYADGSFDLVVSALTIDYLVRPITLCREMGRVLRPGGRVCVLFSNRLFFTKAVANWAGKDDVDHVLDVATYLHYANGESGSGVGEK----MLSKPHAKDISPSPTKGDPLYVVWADRL 287

The following BLAST results are available for this feature:

BLAST of NO06G04080.1 vs.

BLAST of NO06G04080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26403.1	1.000e-101	69.86	ubiquinone menaquinone biosynthesis methyltransfer...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G04080	NO06G04080	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G04080.1	NO06G04080.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G04080.1.cds1	NO06G04080.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04080.1.cds2	NO06G04080.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04080.1.cds3	NO06G04080.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04080.1.cds4	NO06G04080.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04080.1.cds5	NO06G04080.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04080.1.cds6	NO06G04080.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:1139019..1142053-
coding sequence from alignment at chr6:1139019..1142053-

mRNA sequence

>NO06G04080.1 ID=NO06G04080.1|Name=NO06G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2300bp
ATCGTATGAGTGGGTGTGTGTATGTGTGTGTTGCGAAGTACCACTTTACT
TTCTTCTTTGTTTGTTTGCCGCAGCCGCACATCATCGTCCATCCAGAGCA
GCAGTCGGACGCCCGCTGCCCTCTTTGCCAAAGCCACAGTCACACACATG
CAGAGCACATGCAACAAAAGGACACGTGTCAATGTCACTCAAACCTCTTT
CCTCTTCTGGCAGTGCAGCTAGTCAAGGGTTCGTTCGTCCACCCGGATGT
GCAAATGGCCTCGCCAGCATCCCTTGTCATTCGTCGCAGCGCCTTTCCGG
CTCCGTCGACCATGTCCTACCCGCGCACTTATACTGACTGCGATTTTCAC
CCACGCACACCCAAAGCATGACAAGTAGGGCACGTAGACGAAGTAGGCCA
CCACCCACGACCCTGTTTTTTGGTGCCACAATTATGGCCGGCGCTCTCGC
CCTCTCCCTTTCTTGCCTCACCAAGGGTGGCAGCACCATCATTAAGCGCC
GTTCTGCCCCTGCCTTCTTGCTCTTACCTCGCTCACCTTGCTCTCTCCAC
GTGGCCAAGCCCTCCACCACGAGTTGCACCACTCTTCATGGCCGTGGTGG
CGGTGCGGGCAGGAAAGGAGAGGACAAGTTGTCGAAGGGCAAAAAAAAAG
GCGACCTCCCAGAGAAGACTTGCGTGGTATGCGGTAGGCCTTTCACATGG
CGTGCCAAGTGGGCCAAGGTCTGGGACGAGGTTAAGTATTGCTCGGATAA
GTGTCGAGGACAGCGGTCCAAGGGAAGCGAAGGCGGTGGGGTTGGAGGAG
GGGAGGGAGGGGGCAGCCTGAAGAGCAATCGAGCGACCACAACAACCACA
GCAACGACTATGGCAAAGGCGACGACGCATATGCCAGTGGCAAGTTCCTT
CATGATTACGCCTCGACGGTCTTTCTTATCGTCCACTGTCAAAGGGCTGG
GGGGAGGCATGGCTGCCGCAGTCATAGCGGGCGCATTCTTCACAAGCTTA
GAGGAAGGAGGAGGAACCCCCCGCCGCCTTCTCCGCCCCTCCCCCGCGCT
AGCGGACGGTGAGAGAGTAGCCCGTAGACCGGGCAAGGGTGAGATTGATG
CCTTGTTGGAAGGCAGTGAGGAGGAGCTATGGCCAGACGTGGACCCGCCA
TATCAAAAATCGGATTTCGCGCGGTTGGATGAGACGGATGATGGGCTCTT
TTATGACGAGCCCAAGCTGGTCGAGCACATTGACAAGGCGGCAGTGCAGG
CCATGACCAAATACTACCAACAGATGCTGGAGGAGGTTGGGTTGGACATG
TACGGGGATAAGACCCGACCGTTGGATATACTGGACGTCGGGGCGTCATG
GGTGAGCCACCTCCCCTCCTCCTACACTCCTGCGCGGACCACCACCACCG
GCAGCAGCAGCAGCAGCAGCAGCAGTCGTGTGGCGGGCCTGGGAATGAAT
GCTGAGGAACTTAAACTGAACCCCCAGCTGACTGAGTTCACGGTGTGCGA
CCTCAATAAGACACCACGCCTGCCCTACGATGACGCCAGTTTCGACGTAG
TCGTTTGCGCCCTCACAATTGACTACCTCACTCGTCCTATCTCCGTCTGT
CGGGAAATGACTCGTGTCCTTCGCCCACGGGGCCGCGTCTGCATTGTCTT
CTCCAACCGCTTGTTCTTCACGAAGGCCGTTGCAAACTGGGCGGGGAAAG
ATGACGTTGATCATGTGTTGGACGTGGCGAGCTACCTGCACTACGCTAGC
GCGGGAGGGGGAGGAATGGAGGGAGGAAGGGCGGAGGTGGGGAGGCTTGA
CAAGCCTAAGGCCCGGGACGTCAGCCCAACTCCAACGAAAGGAGACCCAC
TTTACGTGGTATGGGCAAACAAACTGTGAGTTATGGCCGAGGTATTGGGG
TCATCATTCGTGTAAAAGAAAGAACCAAAAAAAGAATGCTCTGCGTAGAT
AGAGCCCTGATTGGGCAGGGTGAAAGCAACGAAAACGAAAATGGAAACCA
AAATAAATAAACAAGAGATATGCAGTGGAAAAGGTGTGCCCGTCTCTCCT
CTGTTAATGTGAGATACACATTCCTTTATATTACTCTGATGAAAGCAGAG
GGTGCTGCTGCTGCTAGTCTGACTTCACCGGCTTCAGGAAACTGAATAAG
CCCCCCCTTCTCCTGTTTTTTGTAGCCTCTACGAGGTCTACGAGGAGGCC
ATCAACATGGTTGTTTGTTATGTTGGTTCCGAGGTTGCCCTTGCTCAATT
GCCGCTGTTTCCCCGGCGGTGGTTCTAACTGATGCCACAACCTGAGATCT

protein sequence of NO06G04080.1

>NO06G04080.1-protein ID=NO06G04080.1-protein|Name=NO06G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MTSRARRRSRPPPTTLFFGATIMAGALALSLSCLTKGGSTIIKRRSAPAF
LLLPRSPCSLHVAKPSTTSCTTLHGRGGGAGRKGEDKLSKGKKKGDLPEK
TCVVCGRPFTWRAKWAKVWDEVKYCSDKCRGQRSKGSEGGGVGGGEGGGS
LKSNRATTTTTATTMAKATTHMPVASSFMITPRRSFLSSTVKGLGGGMAA
AVIAGAFFTSLEEGGGTPRRLLRPSPALADGERVARRPGKGEIDALLEGS
EEELWPDVDPPYQKSDFARLDETDDGLFYDEPKLVEHIDKAAVQAMTKYY
QQMLEEVGLDMYGDKTRPLDILDVGASWVSHLPSSYTPARTTTTGSSSSS
SSSRVAGLGMNAEELKLNPQLTEFTVCDLNKTPRLPYDDASFDVVVCALT
IDYLTRPISVCREMTRVLRPRGRVCIVFSNRLFFTKAVANWAGKDDVDHV
LDVASYLHYASAGGGGMEGGRAEVGRLDKPKARDVSPTPTKGDPLYVVWA
NKL*

mRNA from alignment at chr6:1139019..1142053-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G04080.1 ID=NO06G04080.1|Name=NO06G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=3035bp|location=Sequence derived from alignment at chr6:1139019..1142053- (Nannochloropsis oceanica)
ATCGTATGAGTGGGTGTGTGTATGTGTGTGTTGCGAAGTACCACTTTACT
TTCTTCTTTGTTTGTTTGCCGCAGCCGCACATCATCGTCCATCCAGAGCA
GCAGTCGGACGCCCGCTGCCCTCTTTGCCAAAGCCACAGTCACACACATG
CAGAGCACATGCAACAAAAGGACACGTGTCAATGTCACTCAAACCTCTTT
CCTCTTCTGGCAGTGCAGCTAGTCAAGGGTTCGTTCGTCCACCCGGATGT
GCAAATGGCCTCGCCAGCATCCCTTGTCATTCGTCGCAGCGCCTTTCCGG
CTCCGTCGACCATGTCCTACCCGCGCACTTATACTGACTGCGATTTTCAC
CCACGCACACCCAAAGCATGACAAGTAGGGCACGTAGACGAAGTAGGCCA
CCACCCACGACCCTGTTTTTTGGTGCCACAATTATGGCCGGCGCTCTCGC
CCTCTCCCTTTCTTGCCTCACCAAGGGTGGCAGCACCATCATTAAGCGCC
GTTCTGCCCCTGCCTTCTTGCTCTTACCTCGCTCACCTTGCTCTCTCCAC
GTGGCCAAGCCCTCCACCACGAGTTGCACCACTCTTCATGGCCGTGGTGG
CGGTGCGGGCAGGAAAGGAGAGGACAAGTTGTCGAAGGGCAAAAAAAAAG
GCGACCTCCCAGAGAAGACTTGCGTGGTATGCGGTAGGCCTTTCACATGG
CGTGCCAAGTGGGCCAAGGTACGTTTCGATTTTTGACTATTCCGTGAGAA
GATAGCATTAGTAGGGCGAATGTAACAGAAAGCAACAAAATGGCAAGGTG
CCTTGTCAGAAAAGCATCACCTGACGCACAACCACTGACTGACATGGCGC
GTATTCGACCCCCCACTCCCTGACAGGTCTGGGACGAGGTTAAGTATTGC
TCGGATAAGTGTCGAGGACAGCGGTCCAAGGGAAGCGAAGGCGGTGGGGT
TGGAGGAGGGGAGGGAGGGGGCAGCCTGAAGAGCAATCGAGCGACCACAA
CAACCACAGCAACGACTATGGCAAAGGCGACGACGCATATGCCAGTGGCA
AGTTCCTTCATGATTACGCCTCGACGGTCTTTCTTATCGTCCACTGTCAA
AGGGCTGGGGGGAGGCATGGCTGCCGCAGTCATAGCGGGCGCATTCTTCA
CAAGCTTAGAGGAAGGAGGAGGAACCCCCCGCCGCCTTCTCCGCCCCTCC
CCCGCGCTAGCGGACGGTGAGAGAGTAGCCCGTAGACCGGGCAAGGGTGA
GATTGATGCCTTGTTGGAAGGCAGTGAGGAGGAGCTATGGCCAGACGTGG
ACCCGCCATATCAAAAATCGGATTTCGCGCGGTTGGATGAGACGGATGAT
GGGCTCTTTTATGACGAGCCCAAGGTGAAGAGGGAGGGAGACTGGGAAGG
AGGGAGCTGAAGCGGGGAGTCTTGGATTACAGGAAAAGGTCCAGCCACTC
GGCATGAAGAAAAAATGAACACATTTCCTCCCTCCTTCCCTCCCTCCTTC
CTCCAGCTGGTCGAGCACATTGACAAGGCGGCAGTGCAGGCCATGACCAA
ATACTACCAACAGATGCTGGAGGAGGTTGGGTTGGACATGTACGGGGATA
AGACCCGACCGTTGGATATACTGGACGTCGGGGCGTCATGGTGAGTGGGA
AGCTTAACCTCACATAGTCTATTTCCCCTCTCTGGGTGAAACGAAGGAGG
AGTTGGCGTTTGCGTGTCCTCTTAACGCCTTGTACTCACCATTGCGTGAC
AAACAAACACGCACCAACACACATGCAGGGTGAGCCACCTCCCCTCCTCC
TACACTCCTGCGCGGACCACCACCACCGGCAGCAGCAGCAGCAGCAGCAG
CAGTCGTGTGGCGGGCCTGGGAATGAATGCTGAGGAACTTAAACTGAACC
CCCAGCTGACTGAGTACGTTTAATATATCCATCTTTGGGGATTGGGGGGG
GGGATGTAATGTGTGCATTGTTTGCCTCATGCCGGCTCTCTCTCTGGTGC
ATCGCGTCCATCTCCTCTCGCCCCTCTTTCGACGTATTTCCTCTCTACAT
TTGATGACACTCCTAGGTTCACGGTGTGCGACCTCAATAAGACACCACGC
CTGCCCTACGATGACGCCAGTTTCGACGTAGTCGTTTGCGGTGCGTTTCC
CTCCCTCTCTCCCTCCTTTACTGGCCTCATTTTTTCCCTTCGCGCAAATC
TCGTCTTCATACTACCTTGAAGATAAATCACCCACACTTTGAAATGTCTG
CCTTACTCTCTCACTTTCTTTAACCCTCTCCTCCTTCCCTCCAGCCCTCA
CAATTGACTACCTCACTCGTCCTATCTCCGTCTGTCGGGAAATGACTCGT
GTCCTTCGCCCACGGGGCCGCGTCTGCATTGTCTTCTCCAACCGCTTGTT
CTTCACGAAGGCCGTTGCAAACTGGGCGGGGAAAGATGACGTTGATCATG
TGTTGGACGTGGCGAGCTACCTGCACTACGCTAGCGCGGGAGGGGGAGGA
ATGGAGGGAGGAAGGGCGGAGGTGGGGAGGCTTGACAAGCCTAAGGCCCG
GGACGTCAGCCCAACTCCAACGAAAGGAGACCCACTTTACGTGGTATGGG
CAAACAAACTGTGAGTTATGGCCGAGGTATTGGGGTCATCATTCGTGTAA
AAGAAAGAACCAAAAAAAGAATGCTCTGCGTAGATAGAGCCCTGATTGGG
CAGGGTGAAAGCAACGAAAACGAAAATGGAAACCAAAATAAATAAACAAG
AGATATGCAGTGGAAAAGGTGTGCCCGTCTCTCCTCTGTTAATGTGAGAT
ACACATTCCTTTATATTACTCTGATGAAAGCAGAGGGTGCTGCTGCTGCT
AGTCTGACTTCACCGGCTTCAGGAAACTGAATAAGCCCCCCCTTCTCCTG
TTTTTTGTAGCCTCTACGAGGTCTACGAGGAGGCCATCAACATGGTTGTT
TGTTATGTTGGTTCCGAGGTTGCCCTTGCTCAATTGCCGCTGTTTCCCCG
GCGGTGGTTCTAACTGATGCCACAACCTGAGATCT

Coding sequence (CDS) from alignment at chr6:1139019..1142053-

>NO06G04080.1 ID=NO06G04080.1|Name=NO06G04080.1|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at chr6:1139019..1142053- (Nannochloropsis oceanica)
ATGACAAGTAGGGCACGTAGACGAAGTAGGCCACCACCCACGACCCTGTT
TTTTGGTGCCACAATTATGGCCGGCGCTCTCGCCCTCTCCCTTTCTTGCC
TCACCAAGGGTGGCAGCACCATCATTAAGCGCCGTTCTGCCCCTGCCTTC
TTGCTCTTACCTCGCTCACCTTGCTCTCTCCACGTGGCCAAGCCCTCCAC
CACGAGTTGCACCACTCTTCATGGCCGTGGTGGCGGTGCGGGCAGGAAAG
GAGAGGACAAGTTGTCGAAGGGCAAAAAAAAAGGCGACCTCCCAGAGAAG
ACTTGCGTGGTATGCGGTAGGCCTTTCACATGGCGTGCCAAGTGGGCCAA
GGTCTGGGACGAGGTTAAGTATTGCTCGGATAAGTGTCGAGGACAGCGGT
CCAAGGGAAGCGAAGGCGGTGGGGTTGGAGGAGGGGAGGGAGGGGGCAGC
CTGAAGAGCAATCGAGCGACCACAACAACCACAGCAACGACTATGGCAAA
GGCGACGACGCATATGCCAGTGGCAAGTTCCTTCATGATTACGCCTCGAC
GGTCTTTCTTATCGTCCACTGTCAAAGGGCTGGGGGGAGGCATGGCTGCC
GCAGTCATAGCGGGCGCATTCTTCACAAGCTTAGAGGAAGGAGGAGGAAC
CCCCCGCCGCCTTCTCCGCCCCTCCCCCGCGCTAGCGGACGGTGAGAGAG
TAGCCCGTAGACCGGGCAAGGGTGAGATTGATGCCTTGTTGGAAGGCAGT
GAGGAGGAGCTATGGCCAGACGTGGACCCGCCATATCAAAAATCGGATTT
CGCGCGGTTGGATGAGACGGATGATGGGCTCTTTTATGACGAGCCCAAGC
TGGTCGAGCACATTGACAAGGCGGCAGTGCAGGCCATGACCAAATACTAC
CAACAGATGCTGGAGGAGGTTGGGTTGGACATGTACGGGGATAAGACCCG
ACCGTTGGATATACTGGACGTCGGGGCGTCATGGGTGAGCCACCTCCCCT
CCTCCTACACTCCTGCGCGGACCACCACCACCGGCAGCAGCAGCAGCAGC
AGCAGCAGTCGTGTGGCGGGCCTGGGAATGAATGCTGAGGAACTTAAACT
GAACCCCCAGCTGACTGAGTTCACGGTGTGCGACCTCAATAAGACACCAC
GCCTGCCCTACGATGACGCCAGTTTCGACGTAGTCGTTTGCGCCCTCACA
ATTGACTACCTCACTCGTCCTATCTCCGTCTGTCGGGAAATGACTCGTGT
CCTTCGCCCACGGGGCCGCGTCTGCATTGTCTTCTCCAACCGCTTGTTCT
TCACGAAGGCCGTTGCAAACTGGGCGGGGAAAGATGACGTTGATCATGTG
TTGGACGTGGCGAGCTACCTGCACTACGCTAGCGCGGGAGGGGGAGGAAT
GGAGGGAGGAAGGGCGGAGGTGGGGAGGCTTGACAAGCCTAAGGCCCGGG
ACGTCAGCCCAACTCCAACGAAAGGAGACCCACTTTACGTGGTATGGGCA
AACAAACTGTGA

Synonyms

Publications