NO06G04040.2, NO06G04040.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04040.2
Unique NameNO06G04040.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3368
Alignment locationchr6:1126890..1131121 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1126890..1131121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04040.2 vs.
Match: XP_005855864.1 (hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526]; EKU20489.1 hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526]; EWM26401.1 hypothetical protein Naga_100365g4 [Nannochloropsis gaditana])

HSP 1 Score: 263.1 bits (671), Expect = 7.800e-67
Identity = 123/167 (73.65%), Postives = 143/167 (85.63%), Query Frame = 0 
Query:   23 LVLSLTAISATASVLPRSRGTSRHHLPSAFTFLGLPIPALPNIEMPSSPIEVKLVYQRVIDPIHYGDYCGPTPEITPSTGCQHPLNLAALDDTDEVCRLHDHFYCKCDSIYARQGKTAPSSALIATRSVQSGFRKTYLANLDRDYYLCVHEADQEMLGHFDTLVSEG 190
            L +SL  + A ++    S G  R   P AF+FLGL +PA+P+++MP+SPIEVKLVYQRV+DPIHYGDYCGPTPEITP TGC+HPLNLAALDDTDE+CRLHDHFYCKCDS+Y RQGK+ PSSALIATRS+ + FRKTY ANLD+DYY+CVHEADQEMLG FDTLVSEG
Sbjct:    7 LFISLVPMMARST----SMGDRRRRCP-AFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEG 168
The following BLAST results are available for this feature:
BLAST of NO06G04040.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855864.17.800e-6773.65hypothetical protein NGA_0525000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04040NO06G04040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04040.2NO06G04040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04040.2.cds1NO06G04040.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04040.2.cds2NO06G04040.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04040.2.cds3NO06G04040.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04040.2.cds4NO06G04040.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04040.2 ID=NO06G04040.2|Name=NO06G04040.2|organism=Nannochloropsis oceanica|type=mRNA|length=3368bp
GGGAGGAGGAGGGGAGGGGGAGATTGTAGTTGTAGATTTGTACTTGTGAT
TTTAGGGTGGACGATGGAATGAAAGAATAGTTTATTATTGACAAAAATAC
CACCAAGAAAAAGATCAAGAACGAAGAGAATAACAGCAGGACGAACACCA
ACACACGATTGCGACCCGCGTGGAGAGGTACAGGATCATGGCTCCATCGT
TTCCTCTGCCTCTCCATCCCGTTCATTATGCCACAATTATGTGGTATGTC
TTCGAGAGGGGGGGGGGGGGGAATGCGAACATACATTCAGACTGGGTCAC
ATCCCTTCCATGTGAAGGCAAATCATGAATGAACTGTGCGATACATGTTT
AGAAGAAAGGGAAAGACACGTACCCCAATCCCCCATCCCCCCCTCCCTCC
TTGTTGCTTGATTCCGTGACTCTTTGTTTGCTCTTATTGCAGTCTTTCAG
TTTTCTTCCACTTGATTTAAAGCCATCATTCTATTCATTTGATCCATGCT
AAATCTTGCTCTCCTCAGAGTCTTTGTGTATTAAATGTGAATATCTACGT
ATGTACACTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTCCCT
CATCCCAATGACCCATCATGCCCCAGCCCCAAGCAGCTCCCGCACGTCTG
CCACACCATCTGCCTCGCGAATGGGATGTACGATAAAACATAGTAACACA
AGGACATAAACTGGATAATGATCATGATCACTAACAAGGCTCCCTGACCT
GGTACATCCGAGAAGGCAACTGCGAGGGTCAACACCAACGTCAGCACATA
CACCGCCGTACACAGGGCCCGAGTCGGATGGAACATGCTTTTCGCCTGTG
CAAATGGCCCAGATAAGAAGCACGACCCTGCGAGGGAAATGAGATTTCCT
AGGGTGTACATGACGGCGAAAGGCCCGGGACTGCCCGTCAGGAGCTTGGT
GAACCGGAAGAACGAGCCCACCTCGAGGATGAGACCCAGAACGAAACAGC
AGAGGCAGCCAAAAATGCGATGTTGCCAAGTCAAGGAAGGACACCACCAG
CACATGTCTTCTTCCATTTGTTCACACCATGTCTTGGGTCGGGCTTCTAC
TCCCAGGAGGCGGCGGGCCGAGTCCATGAAGGAAGGAGACGAGGAGGCGA
AGGCGGCTTGGGCGGAGGAAGTGGAAGAGTGGGAGGCACCACGGCCAGGA
TTTAGGCCAGCTTCTAGGTTCATTGGGTGGAAGCACGAAGGTACACTGTG
GCGGGGGCTGGGTGTTGTGAGAGGTTCATGTAAGTTGATGGAATGAAGGG
GGGAGGCGGCATGCTGCTCAGATGCGATGCTGTTCAAATAGGCAGACAGA
ACGTTAAGACCTGGACGGGCATTCATGGAGGCATAAACTTAGAGTTTTGT
TGTCAGCGTGATTGGTAGCGTGTGGGCGGTGTGATTTTGAGTGGGTAGGG
GCTTAAGGCACGGGCTGCTGTGGGCACTTGATTATGATAATGATGACGGT
GGTAGTATTTCTTTTCAAGCCGGAGCGTCTGTGGTGGAACAAAAAAGCAC
TGGCCACCATGCCACCCTCTCATGAAGAACATATTGGCTCTGTTGTGTGA
TGTTGTAGTCTATGCTAAGGCGGGTACGAAGGGACGGGGCATGGCAGACG
CGAGACGCCATGCGAAGCAGCGGTCAATATAATAAATAATAATAAATTCA
AGTCGTTCAAGTTGCCTCCGAACCGATCCCATCGAGAGTGCCGTCCACTC
GCCGTGTGCATTTGGTTGTCGTCCCCCTGTCCAACCCAACCATTCCGTCC
ACACCAAGGCATCTTTAGCTGCAATATGCTTGGCATCTCCCGTTTGTGCG
TGTGAAGCGCCTCGGGCACCCTCACTGCCTCGCGTAGTAGAACCATCTCC
GAGTTCCTCTCTCTCCTCATCAAACGCACACGTCACCACTTTTAACAGGC
AGCAGCAGCCCCCCCGTCTTCCGTCCACCCTACGACTATACCGAGCACAA
CAAGGACCAACGATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATG
TGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGA
TCTCGGCTACCGCAAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCAC
CACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCC
TAATATCGAGATGCCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGC
GCGTCATCGACCCAATACACTATGGCGATTATTGCGGCCCTACACCTGAG
ATTACGCCGTCCACGGGCTGTCAGCACCCTCTGAATCTAGCGGCCTTGGA
CGACACGGACGAGGTGTGTCGCCTGCACGACCATTTTTACTGCAAGTGTG
ACTCGATCTACGCCAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATC
GCCACTCGTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCT
CGACCGCGACTATTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGG
GGCATTTCGACACGCTGGTGTCGGAGGGTGAGGGAGGGAGGGAAATAGGG
AGGGAGGGAGGGAGGGAGGGAGCAGACGAGAAAGAGGGAGAACAAGGTAC
TGAATGGTTGACTTAAACGTGAACTAAATAAATAAATCAATAAGTAAATG
TCGGTAAACACATGTAAACAAACAAGGAAGCGTTGTCCCGGACCATTCGT
CCCCCCTTTCCCTTCCGCCCCCTTTCCCTCCCGTCAGGCCGCCTGCCTGC
CAAATACTGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGACG
TATTTAGGAGGAATATGGCGGTGGACGCCGAGATCCTCGACCTGCAAGCA
CAGGGCGGGATGGAAAGAGGGCGAGCCTACTGGTTTGGGGAGGACGAGAA
GAAGGGGGAGGAAGGAATGGTGCAGGGCAGCAGCCATGAGTCCCGGATGA
TCAATGGGAAGAGCAAGGGACTCAAGTCGTCCTCACAGGTAGTGACGGCG
ACGACGAGCAGCAACGGCAAGCCTTGATGAAGGGGGAAGGAGTACGAGAA
GAGCTGTAAATTTATGTGTTCCATGTGCGGGGAATTGTGACGTTGAACAG
AACATGCGAATGAAAATCACTATTTACGTACACACCCTCCCACACACACT
CTCACATACATATATATATGTATATGTCGTGAGTGTTGTATGTGCGGTGT
ATGTCGGTGGAAAATGAGAAAAGTGAGACATAACGTGACTGAGGCATATA
GTTAGAAATTGTACGGAGACGAGTGAGAAGGCAAGACACTTCCAAAAAGA
AGGAAAAGAATCCCGAAT
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protein sequence of NO06G04040.2

>NO06G04040.2-protein ID=NO06G04040.2-protein|Name=NO06G04040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MTAPPCPRQLLQCAATTFHLLSLVLSLTAISATASVLPRSRGTSRHHLPS
AFTFLGLPIPALPNIEMPSSPIEVKLVYQRVIDPIHYGDYCGPTPEITPS
TGCQHPLNLAALDDTDEVCRLHDHFYCKCDSIYARQGKTAPSSALIATRS
VQSGFRKTYLANLDRDYYLCVHEADQEMLGHFDTLVSEGEGGREIGREGG
REGADEKEGEQGTEWLT*
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mRNA from alignment at chr6:1126890..1131121+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04040.2 ID=NO06G04040.2|Name=NO06G04040.2|organism=Nannochloropsis oceanica|type=mRNA|length=4232bp|location=Sequence derived from alignment at chr6:1126890..1131121+ (Nannochloropsis oceanica)
GGGAGGAGGAGGGGAGGGGGAGATTGTAGTTGTAGATTTGTACTTGTGAT
TTTAGGGTGGACGATGGAATGAAAGAATAGTTTATTATTGACAAAAATAC
CACCAAGAAAAAGATCAAGAACGAAGAGAATAACAGCAGGACGAACACCA
ACACACGATTGCGACCCGCGTGGAGAGGTACAGGATCATGGCTCCATCGT
TTCCTCTGCCTCTCCATCCCGTTCATTATGCCACAATTATGTGGTATGTC
TTCGAGAGGGGGGGGGGGGGGAATGCGAACATACATTCAGACTGGGTCAC
ATCCCTTCCATGTGAAGGCAAATCATGAATGAACTGTGCGATACATGTTT
AGAAGAAAGGGAAAGACACGTACCCCAATCCCCCATCCCCCCCTCCCTCC
TTGTTGCTTGATTCCGTGACTCTTTGTTTGCTCTTATTGCAGTCTTTCAG
TTTTCTTCCACTTGATTTAAAGCCATCATTCTATTCATTTGATCCATGCT
AAATCTTGCTCTCCTCAGAGTCTTTGTGTATTAAATGTGAATATCTACGT
ATGTACACTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTCCCT
CATCCCAATGACCCATCATGCCCCAGCCCCAAGCAGCTCCCGCACGTCTG
CCACACCATCTGCCTCGCGAATGGGATGTACGATAAAACATAGTAACACA
AGGACATAAACTGGATAATGATCATGATCACTAACAAGGCTCCCTGACCT
GGTACATCCGAGAAGGCAACTGCGAGGGTCAACACCAACGTCAGCACATA
CACCGCCGTACACAGGGCCCGAGTCGGATGGAACATGCTTTTCGCCTGTG
CAAATGGCCCAGATAAGAAGCACGACCCTGCGAGGGAAATGAGATTTCCT
AGGGTGTACATGACGGCGAAAGGCCCGGGACTGCCCGTCAGGAGCTTGGT
GAACCGGAAGAACGAGCCCACCTCGAGGATGAGACCCAGAACGAAACAGC
AGAGGCAGCCAAAAATGCGATGTTGCCAAGTCAAGGAAGGACACCACCAG
CACATGTCTTCTTCCATTTGTTCACACCATGTCTTGGGTCGGGCTTCTAC
TCCCAGGAGGCGGCGGGCCGAGTCCATGAAGGAAGGAGACGAGGAGGCGA
AGGCGGCTTGGGCGGAGGAAGTGGAAGAGTGGGAGGCACCACGGCCAGGA
TTTAGGCCAGCTTCTAGGTTCATTGGGTGGAAGCACGAAGGTACACTGTG
GCGGGGGCTGGGTGTTGTGAGAGGTTCATGTAAGTTGATGGAATGAAGGG
GGGAGGCGGCATGCTGCTCAGATGCGATGCTGTTCAAATAGGCAGACAGA
ACGTTAAGACCTGGACGGGCATTCATGGAGGCATAAACTTAGAGTTTTGT
TGTCAGCGTGATTGGTAGCGTGTGGGCGGTGTGATTTTGAGTGGGTAGGG
GCTTAAGGCACGGGCTGCTGTGGGCACTTGATTATGATAATGATGACGGT
GGTAGTATTTCTTTTCAAGCCGGAGCGTCTGTGGTGGAACAAAAAAGCAC
TGGCCACCATGCCACCCTCTCATGAAGAACATATTGGCTCTGTTGTGTGA
TGTTGTAGTCTATGCTAAGGCGGGTACGAAGGGACGGGGCATGGCAGACG
CGAGACGCCATGCGAAGCAGCGGTCAATATAATAAATAATAATAAATTCA
AGTCGTTCAAGTTGCCTCCGAACCGATCCCATCGAGAGTGCCGTCCACTC
GCCGTGTGCATTTGGTTGTCGTCCCCCTGTCCAACCCAACCATTCCGTCC
ACACCAAGGCATCTTTAGCTGCAATATGCTTGGCATCTCCCGTTTGTGCG
TGTGAAGCGCCTCGGGCACCCTCACTGCCTCGCGTAGTAGAACCATCTCC
GAGTTCCTCTCTCTCCTCATCAAACGCACACGTCACCACTTTTAACAGGC
AGCAGCAGCCCCCCCGTCTTCCGTCCACCCTACGACTATACCGAGCACAA
CAAGGACCAACGATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATG
TGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGA
TCTCGGCTACCGCAAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCAC
CACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCC
TAATATCGAGATGCCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGC
GCGTCATCGACCCAATGTATGTGGAGGGATGGAAAGGGAGGAAGGTGAAG
GGAGGGAGGAGAGGCGAGGTAAATAGAATCTCGGCTTGGGGTCATTCACG
CACGATTAATCCTTCCATTTATACATGTATATATGTACATATGCCCTTAT
TTTCAATCTTTCAGACACTATGGCGATTATTGCGGCCCTACACCTGAGGT
ACGTCCCTCACCTGTCCCTCTTCCCTCTCTCCCTTTTTCCTTTTTGGGGG
GGTGTAGGTGCGTGCTCACGAGAATGCAGGCCATGCTGAAGCTGTCGTGC
CTTTTCCATCCTTCCTACCATCTTCCACCTTCCGTTCAGATAACCCTCTG
CACGGGCTGTCGGCACCCGCCGAATCTAGTATTGAATGAATGATTGATTG
AATGCTCGATCAATCTAACAGCCTTATCATTCCTAATCTAGGAGTCTCAT
CCTTCCTAATCTAGTAGCCTCATTCTTTTGAAACTTCCCCCCTCTCCCCC
CTTCCTCTTTTCTCCCTCCTTCCATCAGATTACGCCGTCCACGGGCTGTC
AGCACCCTCTGAATCTAGCGGCCTTGGACGACACGGACGAGGTGTGTCGC
CTGCACGACCATTTTTACTGCAAGTGTGACTCGATCTACGCCAGGTAGGG
AGGTAGGGAAGGAGGGAGGGAGGCATGGGACGACATGCTTGGTAGGGGTA
GGGATGAAGAAAGAGGGAGGGAGGCAAGGAGGCAGGGGGTGGGAAAGGGC
GTTGAATGGAAGGAAAGCACGATAGACACTAGGACTCCTGGAGGCCTTGC
TTTGTCGGTCAATGGGATGCCGATTTGATTTGTTTGACCTGGTGGTCAAG
ACTCACCCTTTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCT
CTTCCTTAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGCCACTC
GTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCGACCGC
GACTATTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGGCATTT
CGACACGCTGGTGTCGGAGGGTGAGGGAGGGAGGGAAATAGGGAGGGAGG
GAGGGAGGGAGGGAGCAGACGAGAAAGAGGGAGAACAAGGTACTGAATGG
TTGACTTAAACGTGAACTAAATAAATAAATCAATAAGTAAATGTCGGTAA
ACACATGTAAACAAACAAGGAAGCGTTGTCCCGGACCATTCGTCCCCCCT
TTCCCTTCCGCCCCCTTTCCCTCCCGTCAGGCCGCCTGCCTGCCAAATAC
TGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGACGTATTTAG
GAGGAATATGGCGGTGGACGCCGAGATCCTCGACCTGGTGAGAGACGGAG
GGAGGGAGCGAGGACGAGAGAAGGGTTGAGTGGAGTTGTGGATGCATGCG
TACTGATTTATATATTGATATTTTCCTTCCTCCTTATGTATACATACATT
TCACACAGCAAGCACAGGGCGGGATGGAAAGAGGGCGAGCCTACTGGTTT
GGGGAGGACGAGAAGAAGGGGGAGGAAGGAATGGTGCAGGGCAGCAGCCA
TGAGTCCCGGATGATCAATGGGAAGAGCAAGGGACTCAAGTCGTCCTCAC
AGGTAGTGACGGCGACGACGAGCAGCAACGGCAAGCCTTGATGAAGGGGG
AAGGAGTACGAGAAGAGCTGTAAATTTATGTGTTCCATGTGCGGGGAATT
GTGACGTTGAACAGAACATGCGAATGAAAATCACTATTTACGTACACACC
CTCCCACACACACTCTCACATACATATATATATGTATATGTCGTGAGTGT
TGTATGTGCGGTGTATGTCGGTGGAAAATGAGAAAAGTGAGACATAACGT
GACTGAGGCATATAGTTAGAAATTGTACGGAGACGAGTGAGAAGGCAAGA
CACTTCCAAAAAGAAGGAAAAGAATCCCGAAT
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Coding sequence (CDS) from alignment at chr6:1126890..1131121+

>NO06G04040.2 ID=NO06G04040.2|Name=NO06G04040.2|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr6:1126890..1131121+ (Nannochloropsis oceanica)
ATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATGTGCTGCCACTAC
CTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGATCTCGGCTACCG
CAAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCACCACCTTCCCAGT
GCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCCTAATATCGAGAT
GCCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGCGCGTCATCGACC
CAATACACTATGGCGATTATTGCGGCCCTACACCTGAGATTACGCCGTCC
ACGGGCTGTCAGCACCCTCTGAATCTAGCGGCCTTGGACGACACGGACGA
GGTGTGTCGCCTGCACGACCATTTTTACTGCAAGTGTGACTCGATCTACG
CCAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGCCACTCGTTCA
GTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCGACCGCGACTA
TTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGGCATTTCGACA
CGCTGGTGTCGGAGGGTGAGGGAGGGAGGGAAATAGGGAGGGAGGGAGGG
AGGGAGGGAGCAGACGAGAAAGAGGGAGAACAAGGTACTGAATGGTTGAC
TTAA
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Synonyms
Publications