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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:1119493..1122163 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04000.2 vs.
Match: EWM26396.1 (calcium-dependent metacaspase cdp ii, partial [Nannochloropsis gaditana]) HSP 1 Score: 229.9 bits (585), Expect = 1.400e-56 Identity = 165/333 (49.55%), Postives = 195/333 (58.56%), Query Frame = 0
Query: 1 MAYPGAKYRRQQQQRGQHESGPVPLPIPVAAVVPQQQSHPSGFAPT-------YVAPPRRPPAY------------YQQQS------QPVMATAYAVPV--GGASSPVGAPYAPVVNAPTSSAPDFAPSAPPPPPPPPPPPPQYQQIQSASSNVYTPIGGVNVANGRVGTIPSR-------------PPQHQQQYQRYPSPSSPSSSSSASSSTYRVPHQEPPQQPPLSSYPSSSSLPQGSTYQSPGNLHGALPFTSTCAGRKKALFVGITYRGTRAELRGCVNDVKNLHSFIKRFYGFQNEEMRVLTDDSSFSEGSPTRHNILSGMRWLVAG 294
M YPGA++R+Q Q+ Q + GP+ + IPVA+V QQ S P AP+ Y A PR PP+Y YQ S QP++ATAYAVPV G S P + P + PSAPP PPP P PP + Q A +N+YTP+GG VAN V T P PP Q R P+PS P SSS+A YR PH+ P P S LP+GSTYQ P +LHGALPF+S C GR+KALFVGITY GTRAEL+GCVNDVKNLH+FI R YGFQ +EMRVLTDD FSEG+PTR NI+ GMRWLV G
Sbjct: 1 MVYPGARFRKQLQE--QQQQGPLSVSIPVASV--QQPSQPP--APSLPQHGSHYPAAPRPPPSYAPVVAAPSAFQNYQSSSPRPQPQQPIIATAYAVPVQNGAFSGPGAYGHGPPI-----------PSAPPLPPPSAPLPPPWPSTQ-APTNLYTPVGGF-VANNAVATPPPSQQGRPSSSLSSFAPPSGYQPPPR-PAPSFPPSSSAA----YRPPHRPPSSSP--------SPLPEGSTYQRPNDLHGALPFSSPCNGRRKALFVGITYAGTRAELKGCVNDVKNLHAFIHRTYGFQPQEMRVLTDDPGFSEGTPTRQNIVQGMRWLVGG 301
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04000.2 ID=NO06G04000.2|Name=NO06G04000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp
ACAGGCAAAGACCATCATAAAGCATTTCGACAGATCTTGATCCTTCGACT
GCGTCGCCATACCTCTTCCACACTCCGATCCCCTCCTAGCCATCATGGCA
TACCCCGGCGCCAAGTACCGGAGGCAACAGCAGCAGCGGGGGCAGCATGA
GTCTGGGCCAGTGCCCTTGCCCATTCCCGTGGCGGCTGTCGTGCCCCAGC
AGCAGTCTCATCCTTCCGGATTTGCGCCGACGTATGTCGCACCGCCTCGC
CGCCCTCCTGCCTACTACCAACAGCAGTCACAGCCTGTCATGGCCACTGC
TTACGCCGTCCCTGTTGGTGGTGCGTCCAGTCCAGTCGGTGCTCCCTATG
CACCTGTCGTAAATGCCCCTACATCGAGCGCACCCGACTTCGCACCTAGC
GCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAATATCAGCA
AATTCAGAGCGCCTCCAGCAATGTGTACACACCCATTGGTGGTGTTAATG
TCGCTAATGGTCGTGTTGGCACGATTCCTTCTCGTCCTCCCCAGCATCAG
CAGCAGTATCAGCGGTACCCCTCTCCCTCCTCGCCCTCCTCTTCCTCTTC
CGCTTCCTCCTCCACATACCGGGTCCCCCACCAAGAACCACCGCAACAAC
CGCCCCTCTCTTCCTACCCCTCCTCTTCCTCCCTCCCTCAAGGAAGCACG
TATCAAAGCCCTGGGAACCTCCATGGCGCTCTACCCTTCACCTCTACCTG
TGCTGGTCGAAAAAAAGCGTTATTTGTCGGGATTACGTATCGCGGGACGC
GCGCCGAGCTGAGGGGTTGTGTGAATGACGTAAAGAACTTGCATTCCTTT
ATAAAACGGTTTTATGGATTCCAGAATGAGGAGATGCGGGTGTTGACGGA
CGATTCAAGCTTTAGTGAAGGGAGTCCGACGAGGCATAATATCTTGAGTG
GCATGCGATGGCTGGTGGCGGGGGCTCAGCCGGGTGATAGCCTCTTCTTC
CATTTCTCGGGCCACGGAGGGTCGGTCCGGGATTTAAACGGCGACGAGGC
CGACGGGATGGACGAGACGATCCTTCCCATTGACCATGATCGGGCGGGAC
AGATCATAGACGATGAAATCCACGACGTCATGGTGCGGCCCCTCCAAAAA
GGAGTGCGCTTGACGGCCATCTTCGACTCCTGTCACAGGTACGTGTCTCT
TCCTCCCTCACTTCCCTCCCTCCCTCCCTCCTTCCCGCCTTCCCGCTCTC
GGATTGTCTTCCTTCGATCCTTTCTTCGTTGTCGTTATCCGCCGTTGGAT
TTTTTTTCCTGAGTTCGCAAGGACTTCAATTCCTCCCTCCCTCCCTCCCT
GCCTTCATCCACCCATTCCTCCCTCCCTGCTTCCTTCCTTCCTGCAGTGG
CTCAGTGATGGATTTGCCCTTCTCCTACAAAGTCGATGGCTCCCTGCAAA
TTATTCAAGTTGACAACACCGCCGTGGTAAGCAATGGGGGAGGGAGGGGG
GGCGGGCAGGGATGTGCAGCTGTACGATTGTCAAGTGCGTGGTCTTGTTT
TCTCACCCTTCATCCACACGTGATGAGATCCTTCCGCAGGCTCCGATGCT
CCCATCAGTCCTCTTGCCTGATCTTACCCCTCTCTCTTCCTGCCTTGCTC
GTAGCACTGACTCTCCCTGCCTGTCTGATCCTCCCCCCCTTCCATGGATC
GTAGTATACCCTCCCCGTCTAATCCTTCCCCCCTCCTTCTCTATCGTAGT
ACTGACTCTCCCTGCCTGTCTGATCCTCCCCTCCTCCTTCGCCTCCTTTA
GGTCGTGAACGGCCTCGCCAACGTGGGCCTCCACCTCCTGACAGGCAACA
AGACGGCCGCGCTCTTTTCGGGGTTGGAGGCCGTGGGAAAATTGATCATG
GGACCCAAGAATGACGAGGCGGCCCGTCGACGGACAGAGCAGAATAATCA
GAGCGAGGCCGACGTGATCCAATTCGGGGGTTGTCGGGATGATCAGACCA
GTGCCGACGCCCATATCGACGGGCAGGCGAGTGGGGCCATGTCGTGGGCG
TTTATTAAGGCCTTGAGCCAGAGTCCGCACCAGCAATACGCGGAATTACT
GAAGAATATGAGACAATTGTTGAAGTATAGGTATACCCAGATTCCCCAGA
TTTCGACCAGCCATAAGGTTGATTTGTTTACGCCCTTCAATATGTAATTC
GACGAGGGGCGGGAGGGAGGGAAGGAGGGGAGGGGAATCGAGGTTTCTTG
CAGGAGGAGGGGCGTTGCAGCGTGGGTGGCGTAGCGTACATAAGGTCCGT
AGATTGACAGGGGTTGAATAAAGGAGACGAATACATGAGTGGTATGCATT
CGTACGTGTAGTAAAGAACATTGAGAAACTTGTGTTAGTGTGTCCTTGTC
CTAGCGTTCTGAAGGGGAAATCATAGAGTAGGGGCGGAGAAATGATGTTG
ATAATTGCATGTGCACAAAAGAGAGGGGTAGAAAAAGAAAATTACAGAAA
TGGGGATATACTCATGTCTG back to topprotein sequence of NO06G04000.2 >NO06G04000.2-protein ID=NO06G04000.2-protein|Name=NO06G04000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MAYPGAKYRRQQQQRGQHESGPVPLPIPVAAVVPQQQSHPSGFAPTYVAP
PRRPPAYYQQQSQPVMATAYAVPVGGASSPVGAPYAPVVNAPTSSAPDFA
PSAPPPPPPPPPPPPQYQQIQSASSNVYTPIGGVNVANGRVGTIPSRPPQ
HQQQYQRYPSPSSPSSSSSASSSTYRVPHQEPPQQPPLSSYPSSSSLPQG
STYQSPGNLHGALPFTSTCAGRKKALFVGITYRGTRAELRGCVNDVKNLH
SFIKRFYGFQNEEMRVLTDDSSFSEGSPTRHNILSGMRWLVAGAQPGDSL
FFHFSGHGGSVRDLNGDEADGMDETILPIDHDRAGQIIDDEIHDVMVRPL
QKGVRLTAIFDSCHRYVSLPPSLPSLPPSFPPSRSRIVFLRSFLRCRYPP
LDFFS* back to topmRNA from alignment at chr6:1119493..1122163- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04000.2 ID=NO06G04000.2|Name=NO06G04000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp|location=Sequence derived from alignment at chr6:1119493..1122163- (Nannochloropsis oceanica)
ACAGGCAAAGACCATCATAAAGCATTTCGACAGATCTTGATCCTTCGACT
GCGTCGCCATACCTCTTCCACACTCCGATCCCCTCCTAGCCATCATGGCA
TACCCCGGCGCCAAGTACCGGAGGCAACAGCAGCAGCGGGGGCAGCATGA
GTCTGGGCCAGTGCCCTTGCCCATTCCCGTGGCGGCTGTCGTGCCCCAGC
AGCAGTCTCATCCTTCCGGATTTGCGCCGACGTATGTCGCACCGCCTCGC
CGCCCTCCTGCCTACTACCAACAGCAGTCACAGCCTGTCATGGCCACTGC
TTACGCCGTCCCTGTTGGTGGTGCGTCCAGTCCAGTCGGTGCTCCCTATG
CACCTGTCGTAAATGCCCCTACATCGAGCGCACCCGACTTCGCACCTAGC
GCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAATATCAGCA
AATTCAGAGCGCCTCCAGCAATGTGTACACACCCATTGGTGGTGTTAATG
TCGCTAATGGTCGTGTTGGCACGATTCCTTCTCGTCCTCCCCAGCATCAG
CAGCAGTATCAGCGGTACCCCTCTCCCTCCTCGCCCTCCTCTTCCTCTTC
CGCTTCCTCCTCCACATACCGGGTCCCCCACCAAGAACCACCGCAACAAC
CGCCCCTCTCTTCCTACCCCTCCTCTTCCTCCCTCCCTCAAGGAAGCACG
TATCAAAGCCCTGGGAACCTCCATGGCGCTCTACCCTTCACCTCTACCTG
TGCTGGTCGAAAAAAAGCGTTATTTGTCGGGATTACGTATCGCGGGACGC
GCGCCGAGCTGAGGGGTTGTGTGAATGACGTAAAGAACTTGCATTCCTTT
ATAAAACGGTTTTATGGATTCCAGAATGAGGAGATGCGGGTGTTGACGGA
CGATTCAAGCTTTAGTGAAGGGAGTCCGACGAGGCATAATATCTTGAGTG
GCATGCGATGGCTGGTGGCGGGGGCTCAGCCGGGTGATAGGTAGGCGGGA
GAGGGGAAAGGAGGGAGGAAGAGAGGGACGGCGAGGGAGGGCTTAGATGA
GTATTGATGCACAGATAAAGGGATTCTTACAATACTCACTCACACACTCC
CTCCCGCTCCTTCCCCCTCTCGCTCGCCTCCTCCATACAAGCCTCTTCTT
CCATTTCTCGGGCCACGGAGGGTCGGTCCGGGATTTAAACGGCGACGAGG
CCGACGGGATGGACGAGACGATCCTTCCCATTGACCATGATCGGGCGGGA
CAGATCATAGACGATGAAATCCACGACGTCATGGTGCGGCCCCTCCAAAA
AGGAGTGCGCTTGACGGCCATCTTCGACTCCTGTCACAGGTACGTGTCTC
TTCCTCCCTCACTTCCCTCCCTCCCTCCCTCCTTCCCGCCTTCCCGCTCT
CGGATTGTCTTCCTTCGATCCTTTCTTCGTTGTCGTTATCCGCCGTTGGA
TTTTTTTTCCTGAGTTCGCAAGGACTTCAATTCCTCCCTCCCTCCCTCCC
TGCCTTCATCCACCCATTCCTCCCTCCCTGCTTCCTTCCTTCCTGCAGTG
GCTCAGTGATGGATTTGCCCTTCTCCTACAAAGTCGATGGCTCCCTGCAA
ATTATTCAAGTTGACAACACCGCCGTGGTAAGCAATGGGGGAGGGAGGGG
GGGCGGGCAGGGATGTGCAGCTGTACGATTGTCAAGTGCGTGGTCTTGTT
TTCTCACCCTTCATCCACACGTGATGAGATCCTTCCGCAGGCTCCGATGC
TCCCATCAGTCCTCTTGCCTGATCTTACCCCTCTCTCTTCCTGCCTTGCT
CGTAGCACTGACTCTCCCTGCCTGTCTGATCCTCCCCCCCTTCCATGGAT
CGTAGTATACCCTCCCCGTCTAATCCTTCCCCCCTCCTTCTCTATCGTAG
TACTGACTCTCCCTGCCTGTCTGATCCTCCCCTCCTCCTTCGCCTCCTTT
AGGTCGTGAACGGCCTCGCCAACGTGGGCCTCCACCTCCTGACAGGCAAC
AAGACGGCCGCGCTCTTTTCGGGGTTGGAGGCCGTGGGAAAATTGATCAT
GGGACCCAAGAATGACGAGGCGGCCCGTCGACGGACAGAGCAGAATAATC
AGAGCGAGGCCGACGTGATCCAATTCGGGGGTTGTCGGGATGATCAGACC
AGTGCCGACGCCCATATCGACGGGCAGGCGAGTGGGGCCATGTCGTGGGC
GTTTATTAAGGCCTTGAGCCAGAGTCCGCACCAGCAATACGCGGAATTAC
TGAAGAATATGAGACAATTGTTGAAGTATAGGTATACCCAGATTCCCCAG
ATTTCGACCAGCCATAAGGTTGATTTGTTTACGCCCTTCAATATGTAATT
CGACGAGGGGCGGGAGGGAGGGAAGGAGGGGAGGGGAATCGAGGTTTCTT
GCAGGAGGAGGGGCGTTGCAGCGTGGGTGGCGTAGCGTACATAAGGTCCG
TAGATTGACAGGGGTTGAATAAAGGAGACGAATACATGAGTGGTATGCAT
TCGTACGTGTAGTAAAGAACATTGAGAAACTTGTGTTAGTGTGTCCTTGT
CCTAGCGTTCTGAAGGGGAAATCATAGAGTAGGGGCGGAGAAATGATGTT
GATAATTGCATGTGCACAAAAGAGAGGGGTAGAAAAAGAAAATTACAGAA
ATGGGGATATACTCATGTCTG back to topCoding sequence (CDS) from alignment at chr6:1119493..1122163- >NO06G04000.2 ID=NO06G04000.2|Name=NO06G04000.2|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr6:1119493..1122163- (Nannochloropsis oceanica)
ATGGCATACCCCGGCGCCAAGTACCGGAGGCAACAGCAGCAGCGGGGGCA
GCATGAGTCTGGGCCAGTGCCCTTGCCCATTCCCGTGGCGGCTGTCGTGC
CCCAGCAGCAGTCTCATCCTTCCGGATTTGCGCCGACGTATGTCGCACCG
CCTCGCCGCCCTCCTGCCTACTACCAACAGCAGTCACAGCCTGTCATGGC
CACTGCTTACGCCGTCCCTGTTGGTGGTGCGTCCAGTCCAGTCGGTGCTC
CCTATGCACCTGTCGTAAATGCCCCTACATCGAGCGCACCCGACTTCGCA
CCTAGCGCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAATA
TCAGCAAATTCAGAGCGCCTCCAGCAATGTGTACACACCCATTGGTGGTG
TTAATGTCGCTAATGGTCGTGTTGGCACGATTCCTTCTCGTCCTCCCCAG
CATCAGCAGCAGTATCAGCGGTACCCCTCTCCCTCCTCGCCCTCCTCTTC
CTCTTCCGCTTCCTCCTCCACATACCGGGTCCCCCACCAAGAACCACCGC
AACAACCGCCCCTCTCTTCCTACCCCTCCTCTTCCTCCCTCCCTCAAGGA
AGCACGTATCAAAGCCCTGGGAACCTCCATGGCGCTCTACCCTTCACCTC
TACCTGTGCTGGTCGAAAAAAAGCGTTATTTGTCGGGATTACGTATCGCG
GGACGCGCGCCGAGCTGAGGGGTTGTGTGAATGACGTAAAGAACTTGCAT
TCCTTTATAAAACGGTTTTATGGATTCCAGAATGAGGAGATGCGGGTGTT
GACGGACGATTCAAGCTTTAGTGAAGGGAGTCCGACGAGGCATAATATCT
TGAGTGGCATGCGATGGCTGGTGGCGGGGGCTCAGCCGGGTGATAGCCTC
TTCTTCCATTTCTCGGGCCACGGAGGGTCGGTCCGGGATTTAAACGGCGA
CGAGGCCGACGGGATGGACGAGACGATCCTTCCCATTGACCATGATCGGG
CGGGACAGATCATAGACGATGAAATCCACGACGTCATGGTGCGGCCCCTC
CAAAAAGGAGTGCGCTTGACGGCCATCTTCGACTCCTGTCACAGGTACGT
GTCTCTTCCTCCCTCACTTCCCTCCCTCCCTCCCTCCTTCCCGCCTTCCC
GCTCTCGGATTGTCTTCCTTCGATCCTTTCTTCGTTGTCGTTATCCGCCG
TTGGATTTTTTTTCCTGA back to top
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