NO06G03950.1, NO06G03950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03950.1
Unique NameNO06G03950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2594
Alignment locationchr6:1105732..1109700 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1105732..1109700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03950.1 vs.
Match: EWM26391.1 (voltage-dependent anion-selective channel [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 1.300e-37
Identity = 79/85 (92.94%), Postives = 82/85 (96.47%), Query Frame = 0 
Query:    1 MSKTTPAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVTITTENELAGKDGKYDLKAKISGKYKHGATGFSVDKLQLKETGGI 86
            MSKTTPAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGV +TTENEL GKDGK+DLKAKISGKYKH ATGFSVDKLQLKETGG+
Sbjct:    1 MSKTTPAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL 85
The following BLAST results are available for this feature:
BLAST of NO06G03950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26391.11.300e-3792.94voltage-dependent anion-selective channel [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03950NO06G03950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03950.1NO06G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03950.1.cds1NO06G03950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03950.1.cds2NO06G03950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03950.1.cds3NO06G03950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03950.1.cds4NO06G03950.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03950.1.cds5NO06G03950.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03950.1.cds6NO06G03950.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03950.1.cds7NO06G03950.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03950.1.cds8NO06G03950.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03950.1.cds9NO06G03950.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03950.1 ID=NO06G03950.1|Name=NO06G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2594bp
GCTGTGAATGGGGGAATGGGGGAGAAAATTCGAATAGGTGCAGGTCAGCG
TAGAGATAAATTGAGACCATGCCCATCATCATAAATCACAAACAGCATCA
TTAAGATCATCCACGCGTGCTATATTTTTTTGTGTACAGGCGCGTCTTTA
TCTGGTAACGGGTTTGGACCTGCTCGTGACAGGGGGAAGGGGCGTCAAAG
CGAGACACCGCGCAACCAACCAGGAGAAGTTGGCAACATAGCATATGCTA
CTGCACTCTAAGTTTTCTAAAAAGGCGTTCGTTGAGCTGGTCATTCATTA
TTGTCTATGGTTGGGTTCGTTTAGGGAGAGTGAAATGAACGGGCTTGCAT
TGCTTGCTTTTGCGACAGGGGGTTAAAGCGCTCGCCAACGCCGATCTGTG
AGGTAGACGAGGCGTGCGCGTACTTTCCTTTGGACAGCGCTTCAGAGTAT
GTGAAGCACTATAGCTTTTCACGCTCAAGTATAAGTTGTGCATAGTTTGT
GGGTTCTCTGATGCCTTCCCATTTTTACCTCCCCGTATCCGTGCTTGGGT
GGCCGTTGTTGAAAGCCCAACACTTGACTGCTGTAATTTCTGTTGCGTGG
GGGAGCGTGGCGTCAAGAAAGGGAAGCATACGTCAAAGAGCGTTCGACGG
CATCGTGTGAGTTAAAAGATGAGCCGCCGCGGGCTGGTTAAGGGCCCTTA
CACAGAGATGGATGGCATTCGCACGAGGTGGTGTCAAGTGGCAAGTTGCT
GGCGCCAAAGAAGCAAGCAACCAGGGGGCGTCACCACATTTGCCTGGCAT
GTGAATCTGAGCGTGTCTTTGAGTATAGCACGCCGTACAGCGTGGCTTCC
GACGCAACGGGACAGCTAGTATCATACTCTCCTAGCCATCCCTGGCTCTC
GGGTCCCAACTTTCACACAAACACACAAACACACGCGTACACACACAGAT
CCTCCTTCTACCTCTCCAAGCAACCATGAGCAAAACTACCCCGGCTTTTT
TCAAGGACTTTAACAAGCCAGCTGACACCATCCTCAACGATGACTACTCG
CTCAAGCGCACGCTCAAGGTCAAGCACGTCACCCCTGACGGCGTGACCAT
CACCACCGAGAACGAGCTGGCCGGAAAGGACGGGAAGTACGACCTGAAGG
CTAAGATTTCGGGGAAGTATAAGCACGGTGCCACCGGCTTTTCGGTGGAC
AAGCTACAGCTTAAGGAGACGGGCGGCATAGTGGGTGAGTTCGCCCTGGC
AGGCGTGGCCCCCGGTCTGACCTTCACCTTTAAGGGGGAAGAGAAGCCCA
CAGGTGAGCTTGGCCTCGAATACACGGGGGCGCGGTTTGCGGTCAAGAGC
GAGGTGGACCTGGTCCAATTGAGTAAGCTCAAGGCCTCGGCGGTGCTGGC
GCACGAGGGCGGCAAGGTGGGTGGTGATGTGGAGGTGGCCCTGCCGGACG
GGAAGAGCGATCTCGGTCTCAACCGTTGGTCGGTGGGAAGTGCCTATGGC
ACCTCCACCTCCTTCGCCTCCATTGTCGCCGCCAGCGGCAAGACCGGGAT
GGACTATTCGATCTACGGCGTGGTGAAGACCAGCCCCCCCCTCTCCGTGG
CCGGCAAGCTCACCTACCCCTCGGGCGGCAACTACGGCGTTACTTTAGGT
GGGATTTACAAGTGCTCAGCCACCTCCACCCTCAAGGGCAAGATCAACAT
GAGCGGTCTCCTGTCGACCTCAATCATCCACAACGTCCACCCCAAGGTGC
AAGTGACGGCCACGGCCGAAGGCTCCCTCAAGACCATGCAGGACTACAGG
ATGGGCTTCGGGGCCACGCTCGGGTAGTTAGGTTGATGTAGGGAAGGAGG
GACGGGGGAGAGGGGGTAGGGAAGGAGGGAAGGACGGAGGGATGGAGGGA
GGGGGCAGCAGAAGAATGGCTCGTACCTTCTCCTCTTTTCCCTACTCTCT
CCTCCTTCTTAATGCTGGAGGTGTTGGGAGGGTCATGTGAACGAAGGAAG
GAGGAAAGCTCATATTTATTGCCCTTGCTTTTCGGTTCAATCACTATTAT
AGAGAGATGAATATGGGAAAAAAGCGATCCCTAAAAAAAACAGAAAAACA
CCAAAAAAAAATCGAAAGGGATGCGATGTTGGGAAAGAAAGAAAGGCTTT
GTCATTCTTAATTCTTGGACCATACCCGGATGATGATGGCACGAAAGCCA
CATACATATTATCCACCTCCACTTGCAGTGGAGGACGGGAGGGAGGGAGG
ACGACGGTATGTCAGGTCGTTAAGGTTTTATGGAAGCACTTGTGGCGGTC
ATGGGAGTGAGTGTTAGCATTGTGGCAGGCACAAGCCAGAGAAGACGAAG
AGGGAAAGGAGAAGTAAGGATGAAGAAGAAAGTTTCTCGGGAAAAGTGGG
AGAGAGAGGTTTTCGTGAAGCATAATCAGGAGGAGCATAAGGATGAGGAG
GAGAAAAAGGAAGAGGAGGAATAGATGGGGAAAAAAGATGAGGAGATAAA
CGCAGCAAAGAAAATAAGAAACGAAAACAACGAAGACAAGAAATCAACTT
TTTGGATCGATTTGCGTAAATCGTGAAGATTACGATTCTCAGCA
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protein sequence of NO06G03950.1

>NO06G03950.1-protein ID=NO06G03950.1-protein|Name=NO06G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MSKTTPAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVTITTENELAG
KDGKYDLKAKISGKYKHGATGFSVDKLQLKETGGIVGEFALAGVAPGLTF
TFKGEEKPTGELGLEYTGARFAVKSEVDLVQLSKLKASAVLAHEGGKVGG
DVEVALPDGKSDLGLNRWSVGSAYGTSTSFASIVAASGKTGMDYSIYGVV
KTSPPLSVAGKLTYPSGGNYGVTLGGIYKCSATSTLKGKINMSGLLSTSI
IHNVHPKVQVTATAEGSLKTMQDYRMGFGATLG*
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mRNA from alignment at chr6:1105732..1109700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03950.1 ID=NO06G03950.1|Name=NO06G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=3969bp|location=Sequence derived from alignment at chr6:1105732..1109700- (Nannochloropsis oceanica)
GCTGTGAATGGGGGAATGGGGGAGAAAATTCGAATAGGTGCAGGTCAGCG
TAGAGATAAATTGAGACCATGCCCATCATCATAAATCACAAACAGCATCA
TTAAGATCATCCACGCGTGCTATATTTTTTTGTGTACAGGCGCGTCTTTA
TCTGGTAACGGGTTTGGACCTGCTCGTGACAGGGGGAAGGGGCGTCAAAG
CGAGACACCGCGCAACCAACCAGGAGAAGTTGGCAACATAGCATATGCTA
CTGCACTCTAAGTTTTCTAAAAAGGCGTTCGTTGAGCTGGTCATTCATTA
TTGTCTATGGTTGGGTTCGTTTAGGGAGAGTGAAATGAACGGGCTTGCAT
TGCTTGCTTTTGCGACAGGGGGTTAAAGCGCTCGCCAACGCCGATCTGTG
AGGTAGACGAGGCGTGCGCGTACTTTCCTTTGGACAGCGCTTCAGAGTAT
GTGAAGCACTATAGCTTTTCACGCTCAAGTATAAGTTGTGCATAGTTTGT
GGGTTCTCTGATGCCTTCCCATTTTTACCTCCCCGTATCCGTGCTTGGGT
GGCCGTTGTTGAAAGCCCAACACTTGACTGCTGTAATTTCTGTTGCGTGG
GGGAGCGTGGCGTCAAGAAAGGGAAGCATACGTCAAAGAGCGTTCGACGG
CATCGTGTGAGTTAAAAGATGAGCCGCCGCGGGCTGGTTAAGGGCCCTTA
CACAGAGATGGATGGCATTCGCACGAGGTGGTGTCAAGTGGCAAGTTGCT
GGCGCCAAAGAAGCAAGCAACCAGGGGGCGTCACCACATTTGCCTGGCAT
GTGAATCTGAGCGTGTCTTTGAGTATAGCACGCCGTACAGCGTGGCTTCC
GACGCAACGGGACAGCTAGTATCATACTCTCCTAGCCATCCCTGGCTCTC
GGGTCCCAACTTTCACACAAACACACAAACACACGCGTACACACACAGAT
CCTCCTTCTACCTCTCCAAGCAACCATGAGCAAAACTACCCCGGCTTTTT
TCAAGGACTTTAACAAGCCAGCTGACAGTAAGTTCATGGTGAACAGATGG
AGAATGGGATGGATGTGTGCGTGGGAGAGTGAGAGGGGACAGGGGAAGGC
ATTTTGATCGACATGTTTTGATCGACATGAGCAGCACCAGCAGCATCACC
ATGACATGTTAGGAGCAGCAGGGCTGCATGCGGCAGTGATGGCACAGTGG
CAAAGTTCTCTCACACTATTTTCACATCTTTCGCGTCCCCTTTTCACAGC
CATCCTCAACGATGACTACTCGCTCAAGCGCACGCTCAAGGTCAAGCACG
TCACCCCTGACGGCGTGGTACGTACCTCTAGGATTGGAGGCCGGTCCTCC
CTGCTTTCCTCCCTCTCCTCTTTGTCTTTGCCTCCTTCGTGCTGTATGGT
TTTTCCACGCATCTCCTGCATGACGTCCGCACGGGGTTCACGCAGTAAAT
AAATAGCATGCATATCAAACACTCCATTTCTGTCGTCTTACTCCACCCAT
CCCTCCCTCCCATTTCCTTCCCTTCTCCTTGTCTCATGAAGACCATCACC
ACCGAGAACGAGCTGGCCGGAAAGGACGGGAAGTACGACCTGAAGGCTAA
GATTTCGGGGAAGTATAAGCACGGTGCCACCGGCTTTTCGGTGGACAAGC
TACAGCTTAAGGAGACGGGCGGCATGTAAGGAGGGAGAGAGGGAGAGAGG
GAGAAAGGGAGAGAAAGAGAGTGGACTCTATGGTTTGTATAAAGAAATTA
TGATTCGGGGCTGGACGCCTGATGATCACACATGAGATAATTGTTCTTCT
CTTTGACGTACCTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCACAGAGTGGGTGAGTTCGCCCTGGCAGGCGTGGCCCCCGGTCTGAC
CTTCACCTTTAAGGGGGAAGAGAAGCCCACAGGTGAGCTTGGCCTCGAAT
ACACGGGGGCGCGGTTTGCGGTCAAGAGCGAGGTGAGGAAAAGAGGGAGG
GAGGGAGGGAGGAAAAGAGGGGAAGTGCGAGGGTACGTCAGGTTGCGGCA
TGGTGATGTGGTGCCAACAGACCATTTCCTTCCTCCCTTTCTTCCTCCCT
CCCTCCCTCCCTCCCTCCCCCCTTCCCTTTATTTCAGGTGGACCTGGTCC
AATTGAGTAAGCTCAAGGCCTCGGCGGTGCTGGCGCACGAGGGCGGCAAG
GTACGACCTTTTCCTCCCTCCCTCCCTCCCTCCCTCTCTTCCCCTCCATC
ACCCTCTTACCTACCCCCTCCCTCCCTCCCTCTTTAGGTGGGTGGTGATG
TGGAGGTGGCCCTGCCGGACGGGAAGAGCGATCTCGGTCTCAACCGTTGG
TCGGTGGGAAGTGCCTATGGCACCTCCACCTCCTTCGCCTCCATTGTCGC
CGCCAGCGGTACGTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTTTGATTC
ATCGATCATGGTTTGGCCTGAGAGGGCAGGATTCCAGAGATGTGGTGACA
GAGGTGGTGGAGGTGCTGCTGCTGCTGCTGCTGCTCCCTATCAGCAAGGC
TCACCCCTCCCTCCCTCCCTCCCTCCTTCCCATCCACAGGCAAGACCGGG
ATGGACTATTCGATCTACGGCGTGGTGAAGACCAGCCCCCCCCTCTCCGT
GGCCGGCAAGCTCACCTACCCCTCGGGCGGTACGTCAGGCGGGAAGGAGG
GGGGGAGGGGAAAGAGACGAGGAGGAAGGGAGCGATCGACAGATAGAAAG
ACATTCAACGAACTTCCTCCCTCCATCCCTCCCTCCATCCCTCCCTCCCT
CCTTTCTATCCTCCCCCCCTCCCTCAATTCCTTCTTTCTTCCCTCCCTCG
CTGCAGGCAACTACGGCGTTACTTTAGGTGGGATTTACAAGTGCTCAGCC
ACCTCCACCCTCAAGGGCAAGATCAACATGAGCGGTCTCCTGTCGACCTC
AATCATCCACGTAAGGAGAGAGGGGAAGGGGTGGGAGGGTGAGAAGAATG
GAATGGGATTGGATGAAGGACGGTAGCCCCCGAAAGCAACAAACCAGCAA
TAGCACATGAACGCACGCCCCTCAACCCGCCTTCCCTCCCTCCCTTCCTC
CCTCAGAACGTCCACCCCAAGGTGCAAGTGACGGCCACGGCCGAAGGCTC
CCTCAAGACCATGCAGGACTACAGGATGGGCTTCGGGGCCACGCTCGGGT
AGTTAGGTTGATGTAGGGAAGGAGGGACGGGGGAGAGGGGGTAGGGAAGG
AGGGAAGGACGGAGGGATGGAGGGAGGGGGCAGCAGAAGAATGGCTCGTA
CCTTCTCCTCTTTTCCCTACTCTCTCCTCCTTCTTAATGCTGGAGGTGTT
GGGAGGGTCATGTGAACGAAGGAAGGAGGAAAGCTCATATTTATTGCCCT
TGCTTTTCGGTTCAATCACTATTATAGAGAGATGAATATGGGAAAAAAGC
GATCCCTAAAAAAAACAGAAAAACACCAAAAAAAAATCGAAAGGGATGCG
ATGTTGGGAAAGAAAGAAAGGCTTTGTCATTCTTAATTCTTGGACCATAC
CCGGATGATGATGGCACGAAAGCCACATACATATTATCCACCTCCACTTG
CAGTGGAGGACGGGAGGGAGGGAGGACGACGGTATGTCAGGTCGTTAAGG
TTTTATGGAAGCACTTGTGGCGGTCATGGGAGTGAGTGTTAGCATTGTGG
CAGGCACAAGCCAGAGAAGACGAAGAGGGAAAGGAGAAGTAAGGATGAAG
AAGAAAGTTTCTCGGGAAAAGTGGGAGAGAGAGGTTTTCGTGAAGCATAA
TCAGGAGGAGCATAAGGATGAGGAGGAGAAAAAGGAAGAGGAGGAATAGA
TGGGGAAAAAAGATGAGGAGATAAACGCAGCAAAGAAAATAAGAAACGAA
AACAACGAAGACAAGAAATCAACTTTTTGGATCGATTTGCGTAAATCGTG
AAGATTACGATTCTCAGCA
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Coding sequence (CDS) from alignment at chr6:1105732..1109700-

>NO06G03950.1 ID=NO06G03950.1|Name=NO06G03950.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr6:1105732..1109700- (Nannochloropsis oceanica)
ATGAGCAAAACTACCCCGGCTTTTTTCAAGGACTTTAACAAGCCAGCTGA
CACCATCCTCAACGATGACTACTCGCTCAAGCGCACGCTCAAGGTCAAGC
ACGTCACCCCTGACGGCGTGACCATCACCACCGAGAACGAGCTGGCCGGA
AAGGACGGGAAGTACGACCTGAAGGCTAAGATTTCGGGGAAGTATAAGCA
CGGTGCCACCGGCTTTTCGGTGGACAAGCTACAGCTTAAGGAGACGGGCG
GCATAGTGGGTGAGTTCGCCCTGGCAGGCGTGGCCCCCGGTCTGACCTTC
ACCTTTAAGGGGGAAGAGAAGCCCACAGGTGAGCTTGGCCTCGAATACAC
GGGGGCGCGGTTTGCGGTCAAGAGCGAGGTGGACCTGGTCCAATTGAGTA
AGCTCAAGGCCTCGGCGGTGCTGGCGCACGAGGGCGGCAAGGTGGGTGGT
GATGTGGAGGTGGCCCTGCCGGACGGGAAGAGCGATCTCGGTCTCAACCG
TTGGTCGGTGGGAAGTGCCTATGGCACCTCCACCTCCTTCGCCTCCATTG
TCGCCGCCAGCGGCAAGACCGGGATGGACTATTCGATCTACGGCGTGGTG
AAGACCAGCCCCCCCCTCTCCGTGGCCGGCAAGCTCACCTACCCCTCGGG
CGGCAACTACGGCGTTACTTTAGGTGGGATTTACAAGTGCTCAGCCACCT
CCACCCTCAAGGGCAAGATCAACATGAGCGGTCTCCTGTCGACCTCAATC
ATCCACAACGTCCACCCCAAGGTGCAAGTGACGGCCACGGCCGAAGGCTC
CCTCAAGACCATGCAGGACTACAGGATGGGCTTCGGGGCCACGCTCGGGT
AG
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Synonyms
Publications