NO06G03830.1, NO06G03830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03830.1
Unique NameNO06G03830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2060
Alignment locationchr6:1063385..1065444 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1063385..1065444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03830.1 vs.
Match: EWM26369.1 (sentrin-specific protease 1 [Nannochloropsis gaditana])

HSP 1 Score: 574.7 bits (1480), Expect = 3.500e-160
Identity = 342/642 (53.27%), Postives = 428/642 (66.67%), Query Frame = 0 
Query:    4 SGYISRPSLFPRLKSGSRDDGAGGYSSSTSISTSSSTSMGK----NVSSSSSWGFWGKTPPPPSSSSSGLTTVNRGGQAFSSSVPFSCTTPSSNHSSSLSSLSS------EQCEQAYQIIDAGFWRFVDRVIFARTATKDRAPLVELVEGIRTAPYLLNLYGQDQIDEMLALVEANANYVTLPHGPSKMLQVTWVTLPEFKRMCSSVSAAPNPAPAVTPTSGTATSNSNSGSSSCSSSIIRMRGQAGSPKRRRANPGHEGGLALSRPTTTTTSSSSSSSSSSSSSSPSSSSRRLSIATGLDMNKEKLLSLLQDISDEYHVQEGSHAEEEAAGSEARVEGVLAAFGARQDPMREALAAVEETLQVKTEARKKAGGRDRRDRNAEMEIRMAVDVKEAIVRERMAPLSEDEQEEIHQLLRHGRDTDVVVSGFNVDMRRQDIRTCAPCTWLNDEVINFFMNLLKERDHALVAEAAAKGKERRSNWFFNSFFISKLLDDNNGYKYANVKRWSRKAGDLFSYDKVFFPVNIGNSHWCLAVIHMQEKKIKYFDSLVGTGREYLLHLRRYLEDEHQDKKKKTLDVSGWELVHSDRQVVPQQANGADCGCFATAFAYMLSENLPIKYISQADMPAFRQRLVMSIMKKALTW 636
            + + +RP    R K G  D+    Y +  S  ++SS +       +  +S+SW  + +     S+SS     +  G +A       +   PSS+ S   ++          Q + A   ID+ FW FVDRVIF R   + RAPL++LV+GIR+  YL+N YGQ QID++LA ++  A+Y+ LP G S    V WV++ EF+ MC+S++  P+P+          +     G  + SSS +   G A SPKR R         A  R        S+    S S+  P  S     IA G++M+K+KLL  LQ ISDEY   +G  A   A  +EARVEGVL  FG  +DP+R ALAAVEETL+  + AR++AGG+D RDR AE+E RM  DVKE +VR RM+ L+  E +E+H +LR G+ TDVV  GFNVDMRRQD++TC P TWLNDEVINFFM+LLKERD +  A AAA+G ERR NWFFNSFF+SKLLDDNNGYKYANV+RWSRKAGDLFSYDKVFFPVNI N+HWCLAVI+MQEKKI+YFDSLVGTGREYL+ LR+Y+ DEHQDKKK  LD+S WELV SDRQVVPQQ NGADCGCFA+AFAY+LSE+LPI YISQADMPAFRQRLV SI+KKALTW
Sbjct:    5 TSFFTRPRFMLRRKWGHHDEREARYGTKPSAESNSSETPNSFFRGSWRTSTSWAPFSQVYNGASTSS-----MVPGNEACQYDQQDTGHFPSSDPSIPEATTPHWPPSHPHQRQTACSPIDSNFWHFVDRVIFTREEVRGRAPLIKLVDGIRSERYLINCYGQTQIDKLLAPIDTKADYIHLPRGLSGRPLVKWVSMSEFRGMCASLTPIPSPS--------AVSMGFRKGVLAESSSPVA--GYAFSPKRHRGEGYSHDQSAAPRALVEGGDPSTCFRESHSTPLPPPS-----IAAGINMDKQKLLEHLQQISDEYLADDG--ATTAALEAEARVEGVLGGFGGARDPLRHALAAVEETLRKHSAARREAGGKDWRDRAAEIEARMVKDVKEEMVRARMSSLAPAEVKEVHHVLRQGKATDVVARGFNVDMRRQDLQTCNPGTWLNDEVINFFMSLLKERDDSFCAAAAARGVERRKNWFFNSFFMSKLLDDNNGYKYANVRRWSRKAGDLFSYDKVFFPVNIRNTHWCLAVIYMQEKKIQYFDSLVGTGREYLVALRQYIADEHQDKKKSALDISDWELVSSDRQVVPQQGNGADCGCFASAFAYLLSEDLPINYISQADMPAFRQRLVYSIVKKALTW 624
The following BLAST results are available for this feature:
BLAST of NO06G03830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26369.13.500e-16053.27sentrin-specific protease 1 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03830NO06G03830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03830.1NO06G03830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03830.1.cds1NO06G03830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03830.1 ID=NO06G03830.1|Name=NO06G03830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp
AACAGGCAATGAATCGCAGTGGCTACATTAGTAGGCCTTCCCTCTTTCCG
CGGCTGAAATCGGGCAGCAGGGACGACGGAGCAGGCGGGTACAGCAGCAG
CACCAGCATCAGCACAAGCAGTAGCACCAGCATGGGCAAGAACGTCTCGT
CCTCCTCGTCTTGGGGTTTTTGGGGCAAAACACCACCACCGCCGAGTAGC
AGCAGCAGCGGTTTGACGACCGTGAATCGCGGCGGACAGGCTTTCTCATC
TTCTGTCCCTTTCAGCTGCACTACCCCCAGCAGCAACCACTCAAGTTCCC
TGTCTTCCCTCTCTTCCGAACAGTGCGAGCAGGCCTACCAGATCATTGAC
GCCGGATTCTGGCGCTTCGTGGACCGCGTTATTTTCGCTCGGACTGCTAC
GAAGGACCGCGCACCGTTGGTGGAGCTTGTCGAGGGCATCCGCACCGCAC
CCTACCTGCTCAATCTCTACGGCCAAGATCAAATTGATGAAATGCTGGCC
CTCGTTGAAGCCAACGCAAATTATGTGACCTTGCCGCATGGACCGTCCAA
GATGCTCCAAGTGACTTGGGTGACGTTGCCCGAGTTCAAGAGGATGTGTT
CTTCTGTATCTGCTGCTCCTAATCCTGCTCCTGCCGTCACCCCTACTTCC
GGCACAGCCACCAGCAATAGCAACAGCGGTAGCAGCAGCTGTAGCAGCAG
TATCATCCGTATGAGAGGCCAGGCTGGCTCTCCGAAACGCCGTCGTGCCA
ACCCCGGTCATGAAGGCGGTCTAGCTCTGTCCAGACCCACCACCACCACC
ACCTCTTCCTCCTCTTCCTCCTCATCCTCCTCCTCCTCTTCCTCTCCTTC
CTCCTCCTCACGCCGCCTCTCCATCGCCACCGGTCTGGATATGAATAAGG
AAAAGCTGCTGTCACTGCTTCAGGACATTTCAGATGAATACCACGTACAG
GAAGGATCGCACGCAGAGGAGGAAGCTGCAGGGTCAGAGGCAAGGGTGGA
GGGAGTCCTGGCGGCCTTTGGCGCCCGGCAAGATCCGATGCGGGAGGCAT
TGGCTGCGGTGGAAGAGACGCTGCAAGTAAAGACGGAGGCGAGAAAGAAG
GCGGGGGGAAGGGATCGAAGGGACAGAAACGCGGAGATGGAGATACGGAT
GGCGGTGGATGTAAAGGAGGCAATAGTGAGGGAGCGTATGGCCCCGCTGT
CGGAGGATGAGCAGGAAGAGATTCATCAGTTGTTGCGGCACGGAAGGGAC
ACTGACGTGGTAGTAAGCGGGTTTAACGTGGATATGCGACGCCAAGACAT
CCGGACGTGTGCCCCTTGCACCTGGTTGAACGACGAGGTGATCAACTTTT
TCATGAATCTGCTCAAGGAAAGAGACCATGCTTTGGTAGCAGAGGCAGCG
GCCAAGGGGAAAGAGAGGCGTAGCAACTGGTTTTTCAACTCCTTCTTCAT
CAGTAAGCTTCTTGACGACAACAATGGGTATAAATACGCGAATGTCAAGC
GTTGGTCTCGCAAGGCCGGGGATTTGTTCAGCTACGACAAGGTCTTTTTC
CCTGTCAATATTGGTAATTCGCACTGGTGCCTCGCTGTCATTCACATGCA
AGAAAAAAAGATCAAGTACTTCGATTCTCTTGTAGGCACCGGTCGAGAAT
ACCTCCTCCACCTCCGCCGATACCTGGAGGATGAGCATCAGGATAAAAAG
AAAAAGACGTTGGATGTGAGTGGGTGGGAATTGGTTCATTCGGACAGGCA
AGTGGTGCCCCAGCAGGCTAACGGTGCGGATTGTGGCTGTTTTGCTACAG
CATTCGCCTACATGTTGAGCGAAAATTTGCCGATCAAGTACATCTCACAG
GCAGACATGCCGGCATTCAGGCAGCGGTTGGTCATGAGCATTATGAAGAA
GGCGCTGACTTGGTGAGATAGGTAGGGAGGGGTAGAGGTAGGGATGAAAA
GACAGCGAAAACATAGGCCAACTGTCCAGCATCCAATACCTAAGAGAGTG
AGCAATAAATTGCAACATACAAGCGTCACAAACATTAAAGCAACACCAAA
ATCATTGTAA
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protein sequence of NO06G03830.1

>NO06G03830.1-protein ID=NO06G03830.1-protein|Name=NO06G03830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MNRSGYISRPSLFPRLKSGSRDDGAGGYSSSTSISTSSSTSMGKNVSSSS
SWGFWGKTPPPPSSSSSGLTTVNRGGQAFSSSVPFSCTTPSSNHSSSLSS
LSSEQCEQAYQIIDAGFWRFVDRVIFARTATKDRAPLVELVEGIRTAPYL
LNLYGQDQIDEMLALVEANANYVTLPHGPSKMLQVTWVTLPEFKRMCSSV
SAAPNPAPAVTPTSGTATSNSNSGSSSCSSSIIRMRGQAGSPKRRRANPG
HEGGLALSRPTTTTTSSSSSSSSSSSSSSPSSSSRRLSIATGLDMNKEKL
LSLLQDISDEYHVQEGSHAEEEAAGSEARVEGVLAAFGARQDPMREALAA
VEETLQVKTEARKKAGGRDRRDRNAEMEIRMAVDVKEAIVRERMAPLSED
EQEEIHQLLRHGRDTDVVVSGFNVDMRRQDIRTCAPCTWLNDEVINFFMN
LLKERDHALVAEAAAKGKERRSNWFFNSFFISKLLDDNNGYKYANVKRWS
RKAGDLFSYDKVFFPVNIGNSHWCLAVIHMQEKKIKYFDSLVGTGREYLL
HLRRYLEDEHQDKKKKTLDVSGWELVHSDRQVVPQQANGADCGCFATAFA
YMLSENLPIKYISQADMPAFRQRLVMSIMKKALTW*
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mRNA from alignment at chr6:1063385..1065444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03830.1 ID=NO06G03830.1|Name=NO06G03830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp|location=Sequence derived from alignment at chr6:1063385..1065444+ (Nannochloropsis oceanica)
AACAGGCAATGAATCGCAGTGGCTACATTAGTAGGCCTTCCCTCTTTCCG
CGGCTGAAATCGGGCAGCAGGGACGACGGAGCAGGCGGGTACAGCAGCAG
CACCAGCATCAGCACAAGCAGTAGCACCAGCATGGGCAAGAACGTCTCGT
CCTCCTCGTCTTGGGGTTTTTGGGGCAAAACACCACCACCGCCGAGTAGC
AGCAGCAGCGGTTTGACGACCGTGAATCGCGGCGGACAGGCTTTCTCATC
TTCTGTCCCTTTCAGCTGCACTACCCCCAGCAGCAACCACTCAAGTTCCC
TGTCTTCCCTCTCTTCCGAACAGTGCGAGCAGGCCTACCAGATCATTGAC
GCCGGATTCTGGCGCTTCGTGGACCGCGTTATTTTCGCTCGGACTGCTAC
GAAGGACCGCGCACCGTTGGTGGAGCTTGTCGAGGGCATCCGCACCGCAC
CCTACCTGCTCAATCTCTACGGCCAAGATCAAATTGATGAAATGCTGGCC
CTCGTTGAAGCCAACGCAAATTATGTGACCTTGCCGCATGGACCGTCCAA
GATGCTCCAAGTGACTTGGGTGACGTTGCCCGAGTTCAAGAGGATGTGTT
CTTCTGTATCTGCTGCTCCTAATCCTGCTCCTGCCGTCACCCCTACTTCC
GGCACAGCCACCAGCAATAGCAACAGCGGTAGCAGCAGCTGTAGCAGCAG
TATCATCCGTATGAGAGGCCAGGCTGGCTCTCCGAAACGCCGTCGTGCCA
ACCCCGGTCATGAAGGCGGTCTAGCTCTGTCCAGACCCACCACCACCACC
ACCTCTTCCTCCTCTTCCTCCTCATCCTCCTCCTCCTCTTCCTCTCCTTC
CTCCTCCTCACGCCGCCTCTCCATCGCCACCGGTCTGGATATGAATAAGG
AAAAGCTGCTGTCACTGCTTCAGGACATTTCAGATGAATACCACGTACAG
GAAGGATCGCACGCAGAGGAGGAAGCTGCAGGGTCAGAGGCAAGGGTGGA
GGGAGTCCTGGCGGCCTTTGGCGCCCGGCAAGATCCGATGCGGGAGGCAT
TGGCTGCGGTGGAAGAGACGCTGCAAGTAAAGACGGAGGCGAGAAAGAAG
GCGGGGGGAAGGGATCGAAGGGACAGAAACGCGGAGATGGAGATACGGAT
GGCGGTGGATGTAAAGGAGGCAATAGTGAGGGAGCGTATGGCCCCGCTGT
CGGAGGATGAGCAGGAAGAGATTCATCAGTTGTTGCGGCACGGAAGGGAC
ACTGACGTGGTAGTAAGCGGGTTTAACGTGGATATGCGACGCCAAGACAT
CCGGACGTGTGCCCCTTGCACCTGGTTGAACGACGAGGTGATCAACTTTT
TCATGAATCTGCTCAAGGAAAGAGACCATGCTTTGGTAGCAGAGGCAGCG
GCCAAGGGGAAAGAGAGGCGTAGCAACTGGTTTTTCAACTCCTTCTTCAT
CAGTAAGCTTCTTGACGACAACAATGGGTATAAATACGCGAATGTCAAGC
GTTGGTCTCGCAAGGCCGGGGATTTGTTCAGCTACGACAAGGTCTTTTTC
CCTGTCAATATTGGTAATTCGCACTGGTGCCTCGCTGTCATTCACATGCA
AGAAAAAAAGATCAAGTACTTCGATTCTCTTGTAGGCACCGGTCGAGAAT
ACCTCCTCCACCTCCGCCGATACCTGGAGGATGAGCATCAGGATAAAAAG
AAAAAGACGTTGGATGTGAGTGGGTGGGAATTGGTTCATTCGGACAGGCA
AGTGGTGCCCCAGCAGGCTAACGGTGCGGATTGTGGCTGTTTTGCTACAG
CATTCGCCTACATGTTGAGCGAAAATTTGCCGATCAAGTACATCTCACAG
GCAGACATGCCGGCATTCAGGCAGCGGTTGGTCATGAGCATTATGAAGAA
GGCGCTGACTTGGTGAGATAGGTAGGGAGGGGTAGAGGTAGGGATGAAAA
GACAGCGAAAACATAGGCCAACTGTCCAGCATCCAATACCTAAGAGAGTG
AGCAATAAATTGCAACATACAAGCGTCACAAACATTAAAGCAACACCAAA
ATCATTGTAA
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Coding sequence (CDS) from alignment at chr6:1063385..1065444+

>NO06G03830.1 ID=NO06G03830.1|Name=NO06G03830.1|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at chr6:1063385..1065444+ (Nannochloropsis oceanica)
ATGAATCGCAGTGGCTACATTAGTAGGCCTTCCCTCTTTCCGCGGCTGAA
ATCGGGCAGCAGGGACGACGGAGCAGGCGGGTACAGCAGCAGCACCAGCA
TCAGCACAAGCAGTAGCACCAGCATGGGCAAGAACGTCTCGTCCTCCTCG
TCTTGGGGTTTTTGGGGCAAAACACCACCACCGCCGAGTAGCAGCAGCAG
CGGTTTGACGACCGTGAATCGCGGCGGACAGGCTTTCTCATCTTCTGTCC
CTTTCAGCTGCACTACCCCCAGCAGCAACCACTCAAGTTCCCTGTCTTCC
CTCTCTTCCGAACAGTGCGAGCAGGCCTACCAGATCATTGACGCCGGATT
CTGGCGCTTCGTGGACCGCGTTATTTTCGCTCGGACTGCTACGAAGGACC
GCGCACCGTTGGTGGAGCTTGTCGAGGGCATCCGCACCGCACCCTACCTG
CTCAATCTCTACGGCCAAGATCAAATTGATGAAATGCTGGCCCTCGTTGA
AGCCAACGCAAATTATGTGACCTTGCCGCATGGACCGTCCAAGATGCTCC
AAGTGACTTGGGTGACGTTGCCCGAGTTCAAGAGGATGTGTTCTTCTGTA
TCTGCTGCTCCTAATCCTGCTCCTGCCGTCACCCCTACTTCCGGCACAGC
CACCAGCAATAGCAACAGCGGTAGCAGCAGCTGTAGCAGCAGTATCATCC
GTATGAGAGGCCAGGCTGGCTCTCCGAAACGCCGTCGTGCCAACCCCGGT
CATGAAGGCGGTCTAGCTCTGTCCAGACCCACCACCACCACCACCTCTTC
CTCCTCTTCCTCCTCATCCTCCTCCTCCTCTTCCTCTCCTTCCTCCTCCT
CACGCCGCCTCTCCATCGCCACCGGTCTGGATATGAATAAGGAAAAGCTG
CTGTCACTGCTTCAGGACATTTCAGATGAATACCACGTACAGGAAGGATC
GCACGCAGAGGAGGAAGCTGCAGGGTCAGAGGCAAGGGTGGAGGGAGTCC
TGGCGGCCTTTGGCGCCCGGCAAGATCCGATGCGGGAGGCATTGGCTGCG
GTGGAAGAGACGCTGCAAGTAAAGACGGAGGCGAGAAAGAAGGCGGGGGG
AAGGGATCGAAGGGACAGAAACGCGGAGATGGAGATACGGATGGCGGTGG
ATGTAAAGGAGGCAATAGTGAGGGAGCGTATGGCCCCGCTGTCGGAGGAT
GAGCAGGAAGAGATTCATCAGTTGTTGCGGCACGGAAGGGACACTGACGT
GGTAGTAAGCGGGTTTAACGTGGATATGCGACGCCAAGACATCCGGACGT
GTGCCCCTTGCACCTGGTTGAACGACGAGGTGATCAACTTTTTCATGAAT
CTGCTCAAGGAAAGAGACCATGCTTTGGTAGCAGAGGCAGCGGCCAAGGG
GAAAGAGAGGCGTAGCAACTGGTTTTTCAACTCCTTCTTCATCAGTAAGC
TTCTTGACGACAACAATGGGTATAAATACGCGAATGTCAAGCGTTGGTCT
CGCAAGGCCGGGGATTTGTTCAGCTACGACAAGGTCTTTTTCCCTGTCAA
TATTGGTAATTCGCACTGGTGCCTCGCTGTCATTCACATGCAAGAAAAAA
AGATCAAGTACTTCGATTCTCTTGTAGGCACCGGTCGAGAATACCTCCTC
CACCTCCGCCGATACCTGGAGGATGAGCATCAGGATAAAAAGAAAAAGAC
GTTGGATGTGAGTGGGTGGGAATTGGTTCATTCGGACAGGCAAGTGGTGC
CCCAGCAGGCTAACGGTGCGGATTGTGGCTGTTTTGCTACAGCATTCGCC
TACATGTTGAGCGAAAATTTGCCGATCAAGTACATCTCACAGGCAGACAT
GCCGGCATTCAGGCAGCGGTTGGTCATGAGCATTATGAAGAAGGCGCTGA
CTTGGTGA
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Synonyms
Publications