|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr6 | genome | chr6:1060854..1063249 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03820.1 vs.
Match: EWM26360.1 (atp-dependent rna helicase ddx55 [Nannochloropsis gaditana]) HSP 1 Score: 919.8 bits (2376), Expect = 5.100e-264 Identity = 517/732 (70.63%), Postives = 584/732 (79.78%), Query Frame = 0
Query: 7 SSSGGGGPKKPLHPLSFQALKPALHANMLAAIGALGFTQMTPVQASTVPLFLTNKDVCVEAVTGSGKTLAFIVPAVEMILRRERQLKKHEVGAIIISPTRELAKQIFKVATHFCSHAGLRTPLLLIGGTDVVGDNFNRFSQDGADILVATPGRLHDVLERYAHLFDLRELEVLILDEADTLLNMGFKATLTAILGHLPKQRRTGLFSATQTREVRELARAGLRNPATVAVQVVNQRTKEVQATPQTLSNFYWTCKKPEEKLGRLLAFLTKHKKDKVMVFFITCAAVDYFASILTQHPMFKKALG-----GGGREGESG---GSNVAALHGKMVQKKRDGMLGRFTAAAVGGGAVLLCTDVAARGLDVPDVDWIIQYEPPQDPSFFIHRVGRTARAGRMGKSLTFLLEAEAPYVEFLRLKSVPLAQLEEEEVALPESDPEGALVLEGVKDLAMKDREVLEQGTKAYTAFVRAYKEHQCQFIFRFVQLDLEGLARAYALLRLPKMPELTHHPIKVAFEKWSTDTRGIEYKDKKREAARRKRMEETASEREREQRKAEMRKTKKEGDMEKKKVGDGIGEEEAEKRQRKKKKGKHQQILEEWEELGREERLFKRLRNHKISREEYEKELRKRGSDEEGVEEKEDESGDGGSGGDDEEEGSMSSSGLMNDEDRSEIEDDDNEGQPHKKRQGVGRGAQRPQRHKQQQQQQSKKK-SLLHSNKMKQKQRQKAGGWVSQK 730
++S G P H L+FQA+ P+LH LAA+ AL FTQMTPVQAST+PLFLTNKDVCVEAVTGSGKTLAF++PAVEMILRR+ LKKHEVGAIIISPTRELAKQI KV THFCSH GLR PLLL+GGTD+VGDNF RFSQDGADILV TPGRLHDVLERY H +RELEVLILDEADTLLNMGFKATLTAIL HLPKQRRTGLFSATQTREVR+LARAG+RNPATVAVQVVNQ+T+EVQATPQTL NF+WTC +PEEKLGRLLAFL++H++ KVMVFFITCAAVDYFA ILTQHP F++ LG G G++ + G GS VA LHGKMVQKKRDGML RFT AA GG VLLCTDVAARGLDVPDVDWI+QYEPPQDPSFFIHRVGRTARAGR+G+SLTFLLEAE PYVEFLRLK VPLA LEE+EV LP DP G V+EGVK LA++DREVLE+GT+A+TAFVRAYKEHQCQFIFRF QLDL LARAY LLRLPKMPEL+HHPI V F++W+TDTR IEY+DKKREAAR+ R+ E A ER+R + +A RK + G K + + E EKRQRKK+KGKHQQI+EEWEELGREERLFKRLR KISREEYEKELR+RGSDEE G+G + +D S +S +D D E D +G G+ R + RP + Q SKK+ +NKMKQKQ+Q GWVS+K
Sbjct: 2 TASSPDGDNSP-HRLAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLLVGGTDIVGDNFKRFSQDGADILVGTPGRLHDVLERYGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERDRVKEQAAGRKVVR-GRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKELRRRGSDEE---------GEGEASNEDAAHVSAASG---SDSDGGGNESDAEQGAQSATLNGM-RMSARPNGQTRPPPQLSKKQGKFAQNNKMKQKQKQSRRGWVSRK 718
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03820.1 ID=NO06G03820.1|Name=NO06G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2277bp
AACAGAGCATAATGGCCACCGCGACCACCTCCAGCAGCGGTGGGGGCGGC
CCCAAGAAGCCTCTCCATCCCTTGTCGTTCCAGGCATTAAAACCCGCCTT
ACACGCCAATATGCTCGCGGCCATCGGTGCCCTGGGCTTCACGCAAATGA
CCCCCGTACAAGCCTCCACCGTCCCTCTCTTCCTCACCAACAAGGACGTG
TGTGTCGAAGCCGTCACGGGCTCCGGCAAAACCCTGGCCTTCATCGTACC
GGCCGTGGAGATGATATTACGACGGGAAAGACAGCTGAAGAAACACGAGG
TGGGTGCCATAATTATTTCGCCGACACGGGAACTGGCCAAGCAGATCTTC
AAAGTCGCGACGCACTTTTGCTCTCACGCGGGCTTGAGGACCCCGTTGCT
TTTAATAGGCGGCACCGATGTTGTAGGGGACAATTTCAACCGCTTCTCAC
AAGATGGCGCGGATATTTTGGTGGCGACGCCAGGGAGGTTGCATGATGTG
TTGGAACGCTATGCCCATCTGTTTGATCTGAGAGAGCTCGAAGTCCTCAT
CCTCGACGAAGCTGACACTTTACTCAACATGGGCTTCAAGGCCACCTTAA
CGGCCATTCTGGGCCACCTTCCCAAGCAACGACGTACGGGTTTATTTAGT
GCCACGCAGACGAGAGAGGTGAGGGAGCTGGCAAGGGCGGGATTGAGGAA
CCCGGCGACGGTAGCGGTACAGGTGGTGAACCAACGGACGAAGGAAGTTC
AAGCCACTCCCCAGACACTGTCAAATTTCTATTGGACGTGCAAAAAGCCC
GAGGAAAAACTGGGGAGGCTGTTGGCGTTTCTGACGAAGCATAAGAAGGA
TAAGGTGATGGTCTTTTTCATAACTTGTGCGGCAGTCGACTACTTTGCGT
CTATTTTGACACAGCACCCTATGTTCAAGAAGGCACTAGGAGGTGGGGGG
AGGGAGGGAGAAAGTGGGGGGAGCAACGTGGCGGCGTTGCATGGAAAAAT
GGTGCAGAAGAAAAGGGATGGTATGCTGGGTCGATTCACTGCAGCAGCAG
TCGGTGGAGGGGCTGTGTTGTTGTGCACAGATGTTGCGGCGCGGGGGTTA
GACGTGCCAGATGTAGACTGGATCATCCAGTACGAGCCACCGCAAGACCC
TTCCTTTTTTATTCACCGCGTGGGGAGGACGGCGCGGGCGGGGAGGATGG
GGAAGTCTTTGACGTTCTTGCTGGAGGCGGAGGCGCCGTATGTCGAGTTT
TTGCGGTTGAAGAGTGTGCCCTTGGCGCAGCTGGAGGAGGAGGAGGTGGC
CTTACCGGAAAGCGACCCGGAGGGGGCTTTGGTGCTTGAGGGGGTGAAAG
ATTTGGCGATGAAGGATAGGGAGGTGTTAGAACAGGGGACCAAGGCATAC
ACGGCCTTCGTGCGGGCGTACAAGGAGCATCAGTGTCAGTTTATTTTCCG
ATTTGTGCAGTTGGACCTGGAAGGGTTGGCACGTGCTTATGCTTTATTGA
GGCTACCGAAGATGCCGGAGCTGACGCACCACCCGATCAAGGTGGCTTTC
GAGAAGTGGTCAACGGACACCCGAGGCATTGAATATAAGGATAAAAAGAG
GGAGGCGGCTCGGAGGAAAAGGATGGAGGAGACGGCGAGTGAGAGGGAGA
GGGAGCAGCGGAAGGCGGAGATGAGAAAGACGAAAAAGGAGGGGGATATG
GAAAAGAAGAAGGTAGGAGATGGTATTGGAGAGGAGGAAGCGGAGAAGAG
ACAAAGGAAAAAAAAGAAGGGGAAGCACCAGCAGATTTTGGAGGAGTGGG
AGGAGTTGGGGAGGGAGGAGAGGTTGTTCAAGAGGCTCCGGAATCACAAA
ATCAGCAGAGAAGAATACGAGAAGGAGTTGAGGAAGAGGGGGAGTGATGA
GGAGGGGGTGGAAGAGAAGGAGGATGAGAGTGGCGATGGTGGTAGCGGGG
GGGATGATGAGGAAGAAGGGTCGATGTCGTCATCGGGTTTGATGAATGAT
GAGGACAGGAGTGAGATTGAGGATGATGACAACGAGGGGCAGCCACACAA
AAAGAGGCAGGGTGTAGGAAGAGGAGCACAGCGGCCGCAGCGACACAAAC
AGCAGCAGCAGCAGCAGTCAAAGAAAAAGAGTCTTTTGCACAGCAACAAG
ATGAAGCAGAAGCAGAGGCAGAAGGCGGGCGGGTGGGTCTCGCAAAAACG
AGGGTGAGAAAAAGACCTGGGACGTGTTTCAAATTGACAAGATAATTAAA
GAAAGCAAGCGACGAAAAATTTTCGAA back to topprotein sequence of NO06G03820.1 >NO06G03820.1-protein ID=NO06G03820.1-protein|Name=NO06G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=732bp
MATATTSSSGGGGPKKPLHPLSFQALKPALHANMLAAIGALGFTQMTPVQ
ASTVPLFLTNKDVCVEAVTGSGKTLAFIVPAVEMILRRERQLKKHEVGAI
IISPTRELAKQIFKVATHFCSHAGLRTPLLLIGGTDVVGDNFNRFSQDGA
DILVATPGRLHDVLERYAHLFDLRELEVLILDEADTLLNMGFKATLTAIL
GHLPKQRRTGLFSATQTREVRELARAGLRNPATVAVQVVNQRTKEVQATP
QTLSNFYWTCKKPEEKLGRLLAFLTKHKKDKVMVFFITCAAVDYFASILT
QHPMFKKALGGGGREGESGGSNVAALHGKMVQKKRDGMLGRFTAAAVGGG
AVLLCTDVAARGLDVPDVDWIIQYEPPQDPSFFIHRVGRTARAGRMGKSL
TFLLEAEAPYVEFLRLKSVPLAQLEEEEVALPESDPEGALVLEGVKDLAM
KDREVLEQGTKAYTAFVRAYKEHQCQFIFRFVQLDLEGLARAYALLRLPK
MPELTHHPIKVAFEKWSTDTRGIEYKDKKREAARRKRMEETASEREREQR
KAEMRKTKKEGDMEKKKVGDGIGEEEAEKRQRKKKKGKHQQILEEWEELG
REERLFKRLRNHKISREEYEKELRKRGSDEEGVEEKEDESGDGGSGGDDE
EEGSMSSSGLMNDEDRSEIEDDDNEGQPHKKRQGVGRGAQRPQRHKQQQQ
QQSKKKSLLHSNKMKQKQRQKAGGWVSQKRG* back to topmRNA from alignment at chr6:1060854..1063249- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03820.1 ID=NO06G03820.1|Name=NO06G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp|location=Sequence derived from alignment at chr6:1060854..1063249- (Nannochloropsis oceanica)
AACAGAGCATAATGGCCACCGCGACCACCTCCAGCAGCGGTGGGGGCGGC
CCCAAGAAGCCTCTCCATCCCTTGTCGTTCCAGGTATATTTCCTTTCGCT
TTCATATCCTATGGTCCCAACCGACCTCCCCTGTCTCTCCCTGCGTCCAC
ACCTTTCCACTCCCTGTTCATTACTATCGATCAATGCAAACACCTTTTCC
AGGCATTAAAACCCGCCTTACACGCCAATATGCTCGCGGCCATCGGTGCC
CTGGGCTTCACGCAAATGACCCCCGTACAAGCCTCCACCGTCCCTCTCTT
CCTCACCAACAAGGACGTGTGTGTCGAAGCCGTCACGGGCTCCGGCAAAA
CCCTGGCCTTCATCGTACCGGCCGTGGAGATGATATTACGACGGGAAAGA
CAGCTGAAGAAACACGAGGTGGGTGCCATAATTATTTCGCCGACACGGGA
ACTGGCCAAGCAGATCTTCAAAGTCGCGACGCACTTTTGCTCTCACGCGG
GCTTGAGGACCCCGTTGCTTTTAATAGGCGGCACCGATGTTGTAGGGGAC
AATTTCAACCGCTTCTCACAAGATGGCGCGGATATTTTGGTGGCGACGCC
AGGGAGGTTGCATGATGTGTTGGAACGCTATGCCCATCTGTTTGATCTGA
GAGAGCTCGAAGTCCTCATCCTCGACGAAGCTGACACTTTACTCAACATG
GGCTTCAAGGCCACCTTAACGGCCATTCTGGGCCACCTTCCCAAGCAACG
ACGTACGGGTTTATTTAGTGCCACGCAGACGAGAGAGGTGAGGGAGCTGG
CAAGGGCGGGATTGAGGAACCCGGCGACGGTAGCGGTACAGGTGGTGAAC
CAACGGACGAAGGAAGTTCAAGCCACTCCCCAGACACTGTCAAATTTCTA
TTGGACGTGCAAAAAGCCCGAGGAAAAACTGGGGAGGCTGTTGGCGTTTC
TGACGAAGCATAAGAAGGATAAGGTGATGGTCTTTTTCATAACTTGTGCG
GCAGTCGACTACTTTGCGTCTATTTTGACACAGCACCCTATGTTCAAGAA
GGCACTAGGAGGTGGGGGGAGGGAGGGAGAAAGTGGGGGGAGCAACGTGG
CGGCGTTGCATGGAAAAATGGTGCAGAAGAAAAGGGATGGTATGCTGGGT
CGATTCACTGCAGCAGCAGTCGGTGGAGGGGCTGTGTTGTTGTGCACAGA
TGTTGCGGCGCGGGGGTTAGACGTGCCAGATGTAGACTGGATCATCCAGT
ACGAGCCACCGCAAGACCCTTCCTTTTTTATTCACCGCGTGGGGAGGACG
GCGCGGGCGGGGAGGATGGGGAAGTCTTTGACGTTCTTGCTGGAGGCGGA
GGCGCCGTATGTCGAGTTTTTGCGGTTGAAGAGTGTGCCCTTGGCGCAGC
TGGAGGAGGAGGAGGTGGCCTTACCGGAAAGCGACCCGGAGGGGGCTTTG
GTGCTTGAGGGGGTGAAAGATTTGGCGATGAAGGATAGGGAGGTGTTAGA
ACAGGGGACCAAGGCATACACGGCCTTCGTGCGGGCGTACAAGGAGCATC
AGTGTCAGTTTATTTTCCGATTTGTGCAGTTGGACCTGGAAGGGTTGGCA
CGTGCTTATGCTTTATTGAGGCTACCGAAGATGCCGGAGCTGACGCACCA
CCCGATCAAGGTGGCTTTCGAGAAGTGGTCAACGGACACCCGAGGCATTG
AATATAAGGATAAAAAGAGGGAGGCGGCTCGGAGGAAAAGGATGGAGGAG
ACGGCGAGTGAGAGGGAGAGGGAGCAGCGGAAGGCGGAGATGAGAAAGAC
GAAAAAGGAGGGGGATATGGAAAAGAAGAAGGTAGGAGATGGTATTGGAG
AGGAGGAAGCGGAGAAGAGACAAAGGAAAAAAAAGAAGGGGAAGCACCAG
CAGATTTTGGAGGAGTGGGAGGAGTTGGGGAGGGAGGAGAGGTTGTTCAA
GAGGCTCCGGAATCACAAAATCAGCAGAGAAGAATACGAGAAGGAGTTGA
GGAAGAGGGGGAGTGATGAGGAGGGGGTGGAAGAGAAGGAGGATGAGAGT
GGCGATGGTGGTAGCGGGGGGGATGATGAGGAAGAAGGGTCGATGTCGTC
ATCGGGTTTGATGAATGATGAGGACAGGAGTGAGATTGAGGATGATGACA
ACGAGGGGCAGCCACACAAAAAGAGGCAGGGTGTAGGAAGAGGAGCACAG
CGGCCGCAGCGACACAAACAGCAGCAGCAGCAGCAGTCAAAGAAAAAGAG
TCTTTTGCACAGCAACAAGATGAAGCAGAAGCAGAGGCAGAAGGCGGGCG
GGTGGGTCTCGCAAAAACGAGGGTGAGAAAAAGACCTGGGACGTGTTTCA
AATTGACAAGATAATTAAAGAAAGCAAGCGACGAAAAATTTTCGAA back to topCoding sequence (CDS) from alignment at chr6:1060854..1063249- >NO06G03820.1 ID=NO06G03820.1|Name=NO06G03820.1|organism=Nannochloropsis oceanica|type=CDS|length=2196bp|location=Sequence derived from alignment at chr6:1060854..1063249- (Nannochloropsis oceanica)
ATGGCCACCGCGACCACCTCCAGCAGCGGTGGGGGCGGCCCCAAGAAGCC
TCTCCATCCCTTGTCGTTCCAGGCATTAAAACCCGCCTTACACGCCAATA
TGCTCGCGGCCATCGGTGCCCTGGGCTTCACGCAAATGACCCCCGTACAA
GCCTCCACCGTCCCTCTCTTCCTCACCAACAAGGACGTGTGTGTCGAAGC
CGTCACGGGCTCCGGCAAAACCCTGGCCTTCATCGTACCGGCCGTGGAGA
TGATATTACGACGGGAAAGACAGCTGAAGAAACACGAGGTGGGTGCCATA
ATTATTTCGCCGACACGGGAACTGGCCAAGCAGATCTTCAAAGTCGCGAC
GCACTTTTGCTCTCACGCGGGCTTGAGGACCCCGTTGCTTTTAATAGGCG
GCACCGATGTTGTAGGGGACAATTTCAACCGCTTCTCACAAGATGGCGCG
GATATTTTGGTGGCGACGCCAGGGAGGTTGCATGATGTGTTGGAACGCTA
TGCCCATCTGTTTGATCTGAGAGAGCTCGAAGTCCTCATCCTCGACGAAG
CTGACACTTTACTCAACATGGGCTTCAAGGCCACCTTAACGGCCATTCTG
GGCCACCTTCCCAAGCAACGACGTACGGGTTTATTTAGTGCCACGCAGAC
GAGAGAGGTGAGGGAGCTGGCAAGGGCGGGATTGAGGAACCCGGCGACGG
TAGCGGTACAGGTGGTGAACCAACGGACGAAGGAAGTTCAAGCCACTCCC
CAGACACTGTCAAATTTCTATTGGACGTGCAAAAAGCCCGAGGAAAAACT
GGGGAGGCTGTTGGCGTTTCTGACGAAGCATAAGAAGGATAAGGTGATGG
TCTTTTTCATAACTTGTGCGGCAGTCGACTACTTTGCGTCTATTTTGACA
CAGCACCCTATGTTCAAGAAGGCACTAGGAGGTGGGGGGAGGGAGGGAGA
AAGTGGGGGGAGCAACGTGGCGGCGTTGCATGGAAAAATGGTGCAGAAGA
AAAGGGATGGTATGCTGGGTCGATTCACTGCAGCAGCAGTCGGTGGAGGG
GCTGTGTTGTTGTGCACAGATGTTGCGGCGCGGGGGTTAGACGTGCCAGA
TGTAGACTGGATCATCCAGTACGAGCCACCGCAAGACCCTTCCTTTTTTA
TTCACCGCGTGGGGAGGACGGCGCGGGCGGGGAGGATGGGGAAGTCTTTG
ACGTTCTTGCTGGAGGCGGAGGCGCCGTATGTCGAGTTTTTGCGGTTGAA
GAGTGTGCCCTTGGCGCAGCTGGAGGAGGAGGAGGTGGCCTTACCGGAAA
GCGACCCGGAGGGGGCTTTGGTGCTTGAGGGGGTGAAAGATTTGGCGATG
AAGGATAGGGAGGTGTTAGAACAGGGGACCAAGGCATACACGGCCTTCGT
GCGGGCGTACAAGGAGCATCAGTGTCAGTTTATTTTCCGATTTGTGCAGT
TGGACCTGGAAGGGTTGGCACGTGCTTATGCTTTATTGAGGCTACCGAAG
ATGCCGGAGCTGACGCACCACCCGATCAAGGTGGCTTTCGAGAAGTGGTC
AACGGACACCCGAGGCATTGAATATAAGGATAAAAAGAGGGAGGCGGCTC
GGAGGAAAAGGATGGAGGAGACGGCGAGTGAGAGGGAGAGGGAGCAGCGG
AAGGCGGAGATGAGAAAGACGAAAAAGGAGGGGGATATGGAAAAGAAGAA
GGTAGGAGATGGTATTGGAGAGGAGGAAGCGGAGAAGAGACAAAGGAAAA
AAAAGAAGGGGAAGCACCAGCAGATTTTGGAGGAGTGGGAGGAGTTGGGG
AGGGAGGAGAGGTTGTTCAAGAGGCTCCGGAATCACAAAATCAGCAGAGA
AGAATACGAGAAGGAGTTGAGGAAGAGGGGGAGTGATGAGGAGGGGGTGG
AAGAGAAGGAGGATGAGAGTGGCGATGGTGGTAGCGGGGGGGATGATGAG
GAAGAAGGGTCGATGTCGTCATCGGGTTTGATGAATGATGAGGACAGGAG
TGAGATTGAGGATGATGACAACGAGGGGCAGCCACACAAAAAGAGGCAGG
GTGTAGGAAGAGGAGCACAGCGGCCGCAGCGACACAAACAGCAGCAGCAG
CAGCAGTCAAAGAAAAAGAGTCTTTTGCACAGCAACAAGATGAAGCAGAA
GCAGAGGCAGAAGGCGGGCGGGTGGGTCTCGCAAAAACGAGGGTGA back to top
|