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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1026964..1030252 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03710.2 vs.
Match: EWM26389.1 (serine threonine-protein kinase 6 [Nannochloropsis gaditana]) HSP 1 Score: 572.4 bits (1474), Expect = 1.100e-159 Identity = 303/386 (78.50%), Postives = 320/386 (82.90%), Query Frame = 0
Query: 15 MTVEDKENMPVNPNTTSTSGSSSSNNSNSSHDNLKKAPSSSSSREPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREKCTQFIVAIKVLEKRQLFRSSVEHQLRREVGSVRCLCVRACSLVLCLRRVVSHAPPPPQKIEIQAHLRHKNILRMYGYFFDDKRIYLILEYAPHGELYKHLTNQGRFSERQSAQFILEMSSALGYCHEKHVIHRDIKPENLLLGPKRELKIADFGWSVHAPSSRRETLCGTLDYLPPEMIEGKKHDKWVDVWSLGVLMYEFLVGNPPFEAEGHQATYRRISRVDLRFPPEVSSEAQDLIAKLLVKEPSCRLPLDKIPTHPWVLRNAPRHSLQQYLPAGTFAALFSSPPAA---TAAAPVGGSDGRNGGK 398
MT EDKENMP ++TSTSG +S+ SNSS +K+ ++S EPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREK T FIVAIKVLEKRQLFRSSVEHQLRRE IEIQAHLRHKNILRMYGYF+DDKRIYLILEYAPHGELYKHLTNQG FSERQSAQFILEMSSALGYCH+KHVIHRDIKPENLLLGP+RELKIADFGWSVHAPSSRRETLCGTLDYLPPEMIEGKKHDKWVDVWSLGVLMYEFLVGNPPFEAEGHQATYRRISRVDLRFP EVS EAQDLIAKLLVKEP+ RLPL+KIPTHPW+LRNAPRHSLQQYLP TFAALF SPP + TAAA + G GG+
Sbjct: 1 MTSEDKENMPAVSSSTSTSGGRNSS-SNSSSSGMKQ--KIATSLEPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREKRTLFIVAIKVLEKRQLFRSSVEHQLRRE-------------------------------IEIQAHLRHKNILRMYGYFYDDKRIYLILEYAPHGELYKHLTNQGHFSERQSAQFILEMSSALGYCHKKHVIHRDIKPENLLLGPRRELKIADFGWSVHAPSSRRETLCGTLDYLPPEMIEGKKHDKWVDVWSLGVLMYEFLVGNPPFEAEGHQATYRRISRVDLRFPSEVSPEAQDLIAKLLVKEPTHRLPLEKIPTHPWILRNAPRHSLQQYLPPQTFAALFFSPPGSGLPTAAAAATSTAG--GGR 350
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03710.2 ID=NO06G03710.2|Name=NO06G03710.2|organism=Nannochloropsis oceanica|type=mRNA|length=3158bp TCCTATTTCCTTCTGTCTTTTCTTTTTCTTTTCATTCATTCATTTCTTAC GTTGTCTTGCGTTTCAATGTCCAAGGCGCCTGATTACCATCTCTCTCCCG CTTATACCCTCCCCGTCCATTCCCCTGTCCTCCTCTTCCTTCCCCTCCTC CTCTTCCTCCTTTTTCTCGCCTCTGAAACGGTGGGTGGACTTTCCCCGTC GTGTCCAAGATAACCAGGAGCTGTTTCCGTGCGCATCGATCATCCGCCCT TACCACCGACGAAGTAATCGCCTGCCTGAACCCTTCAAAATTGAAATTCA ACGGAAGTTTCAACGCGATGTATAGTGCATGGGGCTTGAGACGCTCACAG AGCTGAGATAAAGGAAGGTCCCCGAAGGTCAAATCTACCATGTCATTCTC AGCGTACGACTTTCCTCCCCAGGGCGGATCGAGGAACACTACATCTTGTT TCAACTCCTTTAACTTCTCCAGAAAATCACCGCGATACGTCGTGACAGTA TCAGTTAATCCCAAGGCCTTCACATTGTGTTCTAATAGGCTGAACCGCTG CGGGTCGAGCTCCACGGCTTGGACCTGGCGGAAATGCTGCGCAAACGACA GGACGTTCCCGCCCGCAGCAGCGCAGCCATCAGTGATCACGGCTCGGTCC CCCACAAGTTGCTGCAAAATCCGCGAAGTGTTGTTGGCTGAGCGCGTGTC CGTGATGCTGTACATGGAGACCTCATCCAAGGCCAGTAGGGCGCGTTGGG CCGGGGAATAGTTGTAGAAGATGGCCCCCCATTTGTACTGGATCTCGTCG TTTTCGCTGGGCACTTCCTTGCCATAAATGATGCGGGACACCGAGGTAGA GGTATCGACAGCAGCAGCCTGGGAAGTCGCGCGGGCGTCATCGTTAGATT GGCCTGGTGGTGGTGTGGGTGCCTCGCTGGCAGCGGCAGCTTTGTTCGTT GAGGAGGACGAGGGGGAGGCGGAGAAGGAGGATGACGATGATGATGCTGG GGCTTGCGCTTGTGCTGTCTGCGTGTTGTAGCCGTCCTCTTTTTCCTTCT CCATCAGCTGGTAAAGGCCAGCTGTGTCGTGGAATTGGTGGTGTGGCGCG CGTGAGACAGGCAAGACGAACGATATGTGGGTCGGCGATCCGTCATCGCT GGAGGAAGCTCAACAAGCAAGGCCCATCGCCTTAGCAGAGTAGGAGCAAC CAGCCATGCCTCATCGGTCTCAAGACTTTCAACCAAAAGCTACACCACAC AGACAGCACTTGCGAAGCACTATCAGACACTTTTCACAGACGCTTGTGCA TTGAACCCCATCCCTCCGTTCGAAAGTCGCCTTAAGCTCAGAGTGCGCGT AGGACTGGCCGCTTTGGACAAACCCAACGACCGAGCCACAGCTAAATGAC CAACTAACAAGGCATCAAACTCAACAAACGCTAATGCTTAAGCCTTATTT CGTCTTCTTAATACAGGTATTAAAACCTGTGGCTACGCGTGCCTTTGGTT GGCTGCATTCTCAGTGCGACAGTCCCCCTGCAGCAAACGCCCGCCCGCCC CGCGGATGTCCGAAAGCAATACCCGTCTCTCATCCCCACTACGCAAAATG ACGGTCGAAGACAAAGAAAACATGCCGGTGAACCCCAACACCACCAGCAC CTCAGGCAGCAGCAGCAGTAACAATAGCAATAGCAGTCATGACAACCTCA AGAAGGCCCCCTCCTCTTCTTCGTCGCGCGAGCCCGCCGACCCGGACCGT GTGTGGTCTTTGAACGACTTTGATATTGGCCGGAAGCTGGGCCGCGGCAA GTTTGGTGCTGTGTATCTCGCCCGGGAAAAGTGCACGCAGTTCATCGTTG CCATCAAGGTCCTAGAAAAGCGGCAGCTCTTTCGTTCGTCGGTCGAGCAC CAACTGCGGCGGGAGGTAGGTTCTGTCCGGTGTCTTTGTGTGCGTGCGTG TTCCCTTGTTTTGTGTCTAAGACGAGTAGTTTCTCACGCCCCTCCCCCCC CCCAAAAGATCGAAATTCAAGCTCACCTCCGTCACAAGAATATCTTGCGT ATGTACGGCTACTTTTTCGACGACAAGCGTATTTATCTCATCTTGGAGTA CGCGCCTCACGGCGAGCTCTACAAGCACCTGACCAACCAAGGTCGGTTCT CCGAACGTCAGTCTGCGCAATTTATCCTCGAGATGTCTTCCGCTCTTGGG TACTGCCACGAGAAGCACGTCATCCATCGAGATATCAAGCCAGAGAATCT GTTACTGGGGCCCAAGCGTGAGTTGAAGATTGCGGATTTTGGGTGGTCTG TGCACGCGCCTTCCTCTCGCAGGGAGACCTTGTGTGGCACCTTGGATTAC CTGCCCCCTGAGATGATAGAGGGAAAGAAGCACGACAAGTGGGTCGATGT TTGGAGTTTGGGCGTTTTGATGTACGAGTTCTTGGTTGGCAATCCCCCCT TTGAAGCCGAGGGGCATCAGGCGACTTACCGAAGAATTAGTCGGGTCGAC CTGAGGTTCCCTCCCGAGGTCTCGTCCGAGGCCCAGGACTTGATTGCCAA GCTGCTGGTCAAAGAGCCGTCGTGTCGTTTACCATTGGACAAAATTCCGA CCCACCCTTGGGTGTTGCGAAACGCGCCACGCCATTCGTTGCAGCAATAC CTGCCGGCCGGGACATTTGCGGCGTTATTTTCCTCGCCCCCTGCTGCTAC TGCTGCTGCTCCGGTGGGCGGAAGTGATGGGAGAAATGGAGGAAAGTAGA AGGTGATGGTAGTGGTAGAGAGAGGAAAGGTAGGAGGATGGGAGGGTGAG ATGGATTTGTACGTAGGAGGGGGAAGAGGGAGGCAGAGAATAATTAAACT GAGCGAATGGTGAGGAAGAGAGAAGGAATCTGGAAGGAAGGGAAGGTGAA AAGGATTTGCCATGACAAGGAATGAGCAGTTGTCAATGCGCAGTATTTGG TGCGAGGAGAAGAGTCGATGGAGAGAGGGAAGAAGGAAGACAGTGCGGCG TGTGGGGCCTCATTGCAACCGAAAGGTACACACGTCAGTCTGCTATTTGG CGTATCAATTTTAAGAAAGTGAAAAGACAGATTAGACATATGACTTTAAA AACGCTCGAGAAAAATACCGGAAAGACCCTTTGGATGGATATGGGGACCT AGGTTCCA back to topprotein sequence of NO06G03710.2 >NO06G03710.2-protein ID=NO06G03710.2-protein|Name=NO06G03710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp MSESNTRLSSPLRKMTVEDKENMPVNPNTTSTSGSSSSNNSNSSHDNLKK APSSSSSREPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREKCTQFIVAI KVLEKRQLFRSSVEHQLRREVGSVRCLCVRACSLVLCLRRVVSHAPPPPQ KIEIQAHLRHKNILRMYGYFFDDKRIYLILEYAPHGELYKHLTNQGRFSE RQSAQFILEMSSALGYCHEKHVIHRDIKPENLLLGPKRELKIADFGWSVH APSSRRETLCGTLDYLPPEMIEGKKHDKWVDVWSLGVLMYEFLVGNPPFE AEGHQATYRRISRVDLRFPPEVSSEAQDLIAKLLVKEPSCRLPLDKIPTH PWVLRNAPRHSLQQYLPAGTFAALFSSPPAATAAAPVGGSDGRNGGK* back to topmRNA from alignment at chr6:1026964..1030252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03710.2 ID=NO06G03710.2|Name=NO06G03710.2|organism=Nannochloropsis oceanica|type=mRNA|length=3289bp|location=Sequence derived from alignment at chr6:1026964..1030252- (Nannochloropsis oceanica) TCCTATTTCCTTCTGTCTTTTCTTTTTCTTTTCATTCATTCATTTCTTAC
GTTGTCTTGCGTTTCAATGTCCAAGGCGCCTGATTACCATCTCTCTCCCG
CTTATACCCTCCCCGTCCATTCCCCTGTCCTCCTCTTCCTTCCCCTCCTC
CTCTTCCTCCTTTTTCTCGCCTCTGAAACGGTGGGTGGACTTTCCCCGTC
GTGTCCAAGATAACCAGGAGCTGTTTCCGTGCGCATCGATCATCCGCCCT
TACCACCGACGAAGTAATCGCCTGCCTGAACCCTTCAAAATTGAAATTCA
ACGGAAGTTTCAACGCGATGTATAGTGCATGGGGCTTGAGACGCTCACAG
AGCTGAGATAAAGGAAGGTCCCCGAAGGTCAAATCTACCATGTCATTCTC
AGCGTACGACTTTCCTCCCCAGGGCGGATCGAGGAACACTACATCTTGTT
TCAACTCCTTTAACTTCTCCAGAAAATCACCGCGATACGTCGTGACAGTA
TCAGTTAATCCCAAGGCCTTCACATTGTGTTCTAATAGGCTGAACCGCTG
CGGGTCGAGCTCCACGGCTTGGACCTGGCGGAAATGCTGCGCAAACGACA
GGACGTTCCCGCCCGCAGCAGCGCAGCCATCAGTGATCACGGCTCGGTCC
CCCACAAGTTGCTGCAAAATCCGCGAAGTGTTGTTGGCTGAGCGCGTGTC
CGTGATGCTGTACATGGAGACCTCATCCAAGGCCAGTAGGGCGCGTTGGG
CCGGGGAATAGTTGTAGAAGATGGCCCCCCATTTGTACTGGATCTCGTCG
TTTTCGCTGGGCACTTCCTTGCCATAAATGATGCGGGACACCGAGGTAGA
GGTATCGACAGCAGCAGCCTGGGAAGTCGCGCGGGCGTCATCGTTAGATT
GGCCTGGTGGTGGTGTGGGTGCCTCGCTGGCAGCGGCAGCTTTGTTCGTT
GAGGAGGACGAGGGGGAGGCGGAGAAGGAGGATGACGATGATGATGCTGG
GGCTTGCGCTTGTGCTGTCTGCGTGTTGTAGCCGTCCTCTTTTTCCTTCT
CCATCAGCTGGTAAAGGCCAGCTGTGTCGTGGAATTGGTGGTGTGGCGCG
CGTGAGACAGGCAAGACGAACGATATGTGGGTCGGCGATCCGTCATCGCT
GGAGGAAGCTCAACAAGCAAGGCCCATCGCCTTAGCAGAGTAGGAGCAAC
CAGCCATGCCTCATCGGTCTCAAGACTTTCAACCAAAAGCTACACCACAC
AGACAGCACTTGCGAAGCACTATCAGACACTTTTCACAGACGCTTGTGCA
TTGAACCCCATCCCTCCGTTCGAAAGTCGCCTTAAGCTCAGAGTGCGCGT
AGGACTGGCCGCTTTGGACAAACCCAACGACCGAGCCACAGCTAAATGAC
CAACTAACAAGGCATCAAACTCAACAAACGCTAATGCTTAAGCCTTATTT
CGTCTTCTTAATACAGGTATTAAAACCTGTGGCTACGCGTGCCTTTGGTT
GGCTGCATTCTCAGTGCGACAGTCCCCCTGCAGCAAACGCCCGCCCGCCC
CGCGGATGTCCGAAAGCAATACCCGTCTCTCATCCCCACTACGCAAAATG
ACGGTCGAAGACAAAGGTATGTGTAATTTCACTGTTCATCAATGGTTGCG
TGCTGTTAAGAAAGCGGCGTGCTGGGTCCTCTTTTGCATCGATCCCCTCC
TTCTCCTCTCTGATCCCTTTCCCCACCTCACCTCTTCTCCCCACCAGAAA
ACATGCCGGTGAACCCCAACACCACCAGCACCTCAGGCAGCAGCAGCAGT
AACAATAGCAATAGCAGTCATGACAACCTCAAGAAGGCCCCCTCCTCTTC
TTCGTCGCGCGAGCCCGCCGACCCGGACCGTGTGTGGTCTTTGAACGACT
TTGATATTGGCCGGAAGCTGGGCCGCGGCAAGTTTGGTGCTGTGTATCTC
GCCCGGGAAAAGTGCACGCAGTTCATCGTTGCCATCAAGGTCCTAGAAAA
GCGGCAGCTCTTTCGTTCGTCGGTCGAGCACCAACTGCGGCGGGAGGTAG
GTTCTGTCCGGTGTCTTTGTGTGCGTGCGTGTTCCCTTGTTTTGTGTCTA
AGACGAGTAGTTTCTCACGCCCCTCCCCCCCCCCAAAAGATCGAAATTCA
AGCTCACCTCCGTCACAAGAATATCTTGCGTATGTACGGCTACTTTTTCG
ACGACAAGCGTATTTATCTCATCTTGGAGTACGCGCCTCACGGCGAGCTC
TACAAGCACCTGACCAACCAAGGTCGGTTCTCCGAACGTCAGTCTGCGCA
ATTTATCCTCGAGATGTCTTCCGCTCTTGGGTACTGCCACGAGAAGCACG
TCATCCATCGAGATATCAAGCCAGAGAATCTGTTACTGGGGCCCAAGCGT
GAGTTGAAGATTGCGGATTTTGGGTGGTCTGTGCACGCGCCTTCCTCTCG
CAGGGAGACCTTGTGTGGCACCTTGGATTACCTGCCCCCTGAGATGATAG
AGGGAAAGAAGCACGACAAGTGGGTCGATGTTTGGAGTTTGGGCGTTTTG
ATGTACGAGTTCTTGGTTGGCAATCCCCCCTTTGAAGCCGAGGGGCATCA
GGCGACTTACCGAAGAATTAGTCGGGTCGACCTGAGGTTCCCTCCCGAGG
TCTCGTCCGAGGCCCAGGACTTGATTGCCAAGCTGCTGGTCAAAGAGCCG
TCGTGTCGTTTACCATTGGACAAAATTCCGACCCACCCTTGGGTGTTGCG
AAACGCGCCACGCCATTCGTTGCAGCAATACCTGCCGGCCGGGACATTTG
CGGCGTTATTTTCCTCGCCCCCTGCTGCTACTGCTGCTGCTCCGGTGGGC
GGAAGTGATGGGAGAAATGGAGGAAAGTAGAAGGTGATGGTAGTGGTAGA
GAGAGGAAAGGTAGGAGGATGGGAGGGTGAGATGGATTTGTACGTAGGAG
GGGGAAGAGGGAGGCAGAGAATAATTAAACTGAGCGAATGGTGAGGAAGA
GAGAAGGAATCTGGAAGGAAGGGAAGGTGAAAAGGATTTGCCATGACAAG
GAATGAGCAGTTGTCAATGCGCAGTATTTGGTGCGAGGAGAAGAGTCGAT
GGAGAGAGGGAAGAAGGAAGACAGTGCGGCGTGTGGGGCCTCATTGCAAC
CGAAAGGTACACACGTCAGTCTGCTATTTGGCGTATCAATTTTAAGAAAG
TGAAAAGACAGATTAGACATATGACTTTAAAAACGCTCGAGAAAAATACC
GGAAAGACCCTTTGGATGGATATGGGGACCTAGGTTCCA back to topCoding sequence (CDS) from alignment at chr6:1026964..1030252- >NO06G03710.2 ID=NO06G03710.2|Name=NO06G03710.2|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr6:1026964..1030252- (Nannochloropsis oceanica) ATGTCCGAAAGCAATACCCGTCTCTCATCCCCACTACGCAAAATGACGGT CGAAGACAAAGAAAACATGCCGGTGAACCCCAACACCACCAGCACCTCAG GCAGCAGCAGCAGTAACAATAGCAATAGCAGTCATGACAACCTCAAGAAG GCCCCCTCCTCTTCTTCGTCGCGCGAGCCCGCCGACCCGGACCGTGTGTG GTCTTTGAACGACTTTGATATTGGCCGGAAGCTGGGCCGCGGCAAGTTTG GTGCTGTGTATCTCGCCCGGGAAAAGTGCACGCAGTTCATCGTTGCCATC AAGGTCCTAGAAAAGCGGCAGCTCTTTCGTTCGTCGGTCGAGCACCAACT GCGGCGGGAGGTAGGTTCTGTCCGGTGTCTTTGTGTGCGTGCGTGTTCCC TTGTTTTGTGTCTAAGACGAGTAGTTTCTCACGCCCCTCCCCCCCCCCAA AAGATCGAAATTCAAGCTCACCTCCGTCACAAGAATATCTTGCGTATGTA CGGCTACTTTTTCGACGACAAGCGTATTTATCTCATCTTGGAGTACGCGC CTCACGGCGAGCTCTACAAGCACCTGACCAACCAAGGTCGGTTCTCCGAA CGTCAGTCTGCGCAATTTATCCTCGAGATGTCTTCCGCTCTTGGGTACTG CCACGAGAAGCACGTCATCCATCGAGATATCAAGCCAGAGAATCTGTTAC TGGGGCCCAAGCGTGAGTTGAAGATTGCGGATTTTGGGTGGTCTGTGCAC GCGCCTTCCTCTCGCAGGGAGACCTTGTGTGGCACCTTGGATTACCTGCC CCCTGAGATGATAGAGGGAAAGAAGCACGACAAGTGGGTCGATGTTTGGA GTTTGGGCGTTTTGATGTACGAGTTCTTGGTTGGCAATCCCCCCTTTGAA GCCGAGGGGCATCAGGCGACTTACCGAAGAATTAGTCGGGTCGACCTGAG GTTCCCTCCCGAGGTCTCGTCCGAGGCCCAGGACTTGATTGCCAAGCTGC TGGTCAAAGAGCCGTCGTGTCGTTTACCATTGGACAAAATTCCGACCCAC CCTTGGGTGTTGCGAAACGCGCCACGCCATTCGTTGCAGCAATACCTGCC GGCCGGGACATTTGCGGCGTTATTTTCCTCGCCCCCTGCTGCTACTGCTG CTGCTCCGGTGGGCGGAAGTGATGGGAGAAATGGAGGAAAGTAG back to top
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