NO06G03710.2, NO06G03710.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03710.2
Unique NameNO06G03710.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3158
Alignment locationchr6:1026964..1030252 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1026964..1030252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G03710.2 vs.
Match: EWM26389.1 (serine threonine-protein kinase 6 [Nannochloropsis gaditana])

HSP 1 Score: 572.4 bits (1474), Expect = 1.100e-159
Identity = 303/386 (78.50%), Postives = 320/386 (82.90%), Query Frame = 0
Query:   15 MTVEDKENMPVNPNTTSTSGSSSSNNSNSSHDNLKKAPSSSSSREPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREKCTQFIVAIKVLEKRQLFRSSVEHQLRREVGSVRCLCVRACSLVLCLRRVVSHAPPPPQKIEIQAHLRHKNILRMYGYFFDDKRIYLILEYAPHGELYKHLTNQGRFSERQSAQFILEMSSALGYCHEKHVIHRDIKPENLLLGPKRELKIADFGWSVHAPSSRRETLCGTLDYLPPEMIEGKKHDKWVDVWSLGVLMYEFLVGNPPFEAEGHQATYRRISRVDLRFPPEVSSEAQDLIAKLLVKEPSCRLPLDKIPTHPWVLRNAPRHSLQQYLPAGTFAALFSSPPAA---TAAAPVGGSDGRNGGK 398
            MT EDKENMP   ++TSTSG  +S+ SNSS   +K+    ++S EPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREK T FIVAIKVLEKRQLFRSSVEHQLRRE                               IEIQAHLRHKNILRMYGYF+DDKRIYLILEYAPHGELYKHLTNQG FSERQSAQFILEMSSALGYCH+KHVIHRDIKPENLLLGP+RELKIADFGWSVHAPSSRRETLCGTLDYLPPEMIEGKKHDKWVDVWSLGVLMYEFLVGNPPFEAEGHQATYRRISRVDLRFP EVS EAQDLIAKLLVKEP+ RLPL+KIPTHPW+LRNAPRHSLQQYLP  TFAALF SPP +   TAAA    + G  GG+
Sbjct:    1 MTSEDKENMPAVSSSTSTSGGRNSS-SNSSSSGMKQ--KIATSLEPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREKRTLFIVAIKVLEKRQLFRSSVEHQLRRE-------------------------------IEIQAHLRHKNILRMYGYFYDDKRIYLILEYAPHGELYKHLTNQGHFSERQSAQFILEMSSALGYCHKKHVIHRDIKPENLLLGPRRELKIADFGWSVHAPSSRRETLCGTLDYLPPEMIEGKKHDKWVDVWSLGVLMYEFLVGNPPFEAEGHQATYRRISRVDLRFPSEVSPEAQDLIAKLLVKEPTHRLPLEKIPTHPWILRNAPRHSLQQYLPPQTFAALFFSPPGSGLPTAAAAATSTAG--GGR 350          
The following BLAST results are available for this feature:
BLAST of NO06G03710.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26389.11.100e-15978.50serine threonine-protein kinase 6 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03710NO06G03710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03710.2NO06G03710.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03710.2.cds1NO06G03710.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03710.2.cds2NO06G03710.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03710.2 ID=NO06G03710.2|Name=NO06G03710.2|organism=Nannochloropsis oceanica|type=mRNA|length=3158bp
TCCTATTTCCTTCTGTCTTTTCTTTTTCTTTTCATTCATTCATTTCTTAC
GTTGTCTTGCGTTTCAATGTCCAAGGCGCCTGATTACCATCTCTCTCCCG
CTTATACCCTCCCCGTCCATTCCCCTGTCCTCCTCTTCCTTCCCCTCCTC
CTCTTCCTCCTTTTTCTCGCCTCTGAAACGGTGGGTGGACTTTCCCCGTC
GTGTCCAAGATAACCAGGAGCTGTTTCCGTGCGCATCGATCATCCGCCCT
TACCACCGACGAAGTAATCGCCTGCCTGAACCCTTCAAAATTGAAATTCA
ACGGAAGTTTCAACGCGATGTATAGTGCATGGGGCTTGAGACGCTCACAG
AGCTGAGATAAAGGAAGGTCCCCGAAGGTCAAATCTACCATGTCATTCTC
AGCGTACGACTTTCCTCCCCAGGGCGGATCGAGGAACACTACATCTTGTT
TCAACTCCTTTAACTTCTCCAGAAAATCACCGCGATACGTCGTGACAGTA
TCAGTTAATCCCAAGGCCTTCACATTGTGTTCTAATAGGCTGAACCGCTG
CGGGTCGAGCTCCACGGCTTGGACCTGGCGGAAATGCTGCGCAAACGACA
GGACGTTCCCGCCCGCAGCAGCGCAGCCATCAGTGATCACGGCTCGGTCC
CCCACAAGTTGCTGCAAAATCCGCGAAGTGTTGTTGGCTGAGCGCGTGTC
CGTGATGCTGTACATGGAGACCTCATCCAAGGCCAGTAGGGCGCGTTGGG
CCGGGGAATAGTTGTAGAAGATGGCCCCCCATTTGTACTGGATCTCGTCG
TTTTCGCTGGGCACTTCCTTGCCATAAATGATGCGGGACACCGAGGTAGA
GGTATCGACAGCAGCAGCCTGGGAAGTCGCGCGGGCGTCATCGTTAGATT
GGCCTGGTGGTGGTGTGGGTGCCTCGCTGGCAGCGGCAGCTTTGTTCGTT
GAGGAGGACGAGGGGGAGGCGGAGAAGGAGGATGACGATGATGATGCTGG
GGCTTGCGCTTGTGCTGTCTGCGTGTTGTAGCCGTCCTCTTTTTCCTTCT
CCATCAGCTGGTAAAGGCCAGCTGTGTCGTGGAATTGGTGGTGTGGCGCG
CGTGAGACAGGCAAGACGAACGATATGTGGGTCGGCGATCCGTCATCGCT
GGAGGAAGCTCAACAAGCAAGGCCCATCGCCTTAGCAGAGTAGGAGCAAC
CAGCCATGCCTCATCGGTCTCAAGACTTTCAACCAAAAGCTACACCACAC
AGACAGCACTTGCGAAGCACTATCAGACACTTTTCACAGACGCTTGTGCA
TTGAACCCCATCCCTCCGTTCGAAAGTCGCCTTAAGCTCAGAGTGCGCGT
AGGACTGGCCGCTTTGGACAAACCCAACGACCGAGCCACAGCTAAATGAC
CAACTAACAAGGCATCAAACTCAACAAACGCTAATGCTTAAGCCTTATTT
CGTCTTCTTAATACAGGTATTAAAACCTGTGGCTACGCGTGCCTTTGGTT
GGCTGCATTCTCAGTGCGACAGTCCCCCTGCAGCAAACGCCCGCCCGCCC
CGCGGATGTCCGAAAGCAATACCCGTCTCTCATCCCCACTACGCAAAATG
ACGGTCGAAGACAAAGAAAACATGCCGGTGAACCCCAACACCACCAGCAC
CTCAGGCAGCAGCAGCAGTAACAATAGCAATAGCAGTCATGACAACCTCA
AGAAGGCCCCCTCCTCTTCTTCGTCGCGCGAGCCCGCCGACCCGGACCGT
GTGTGGTCTTTGAACGACTTTGATATTGGCCGGAAGCTGGGCCGCGGCAA
GTTTGGTGCTGTGTATCTCGCCCGGGAAAAGTGCACGCAGTTCATCGTTG
CCATCAAGGTCCTAGAAAAGCGGCAGCTCTTTCGTTCGTCGGTCGAGCAC
CAACTGCGGCGGGAGGTAGGTTCTGTCCGGTGTCTTTGTGTGCGTGCGTG
TTCCCTTGTTTTGTGTCTAAGACGAGTAGTTTCTCACGCCCCTCCCCCCC
CCCAAAAGATCGAAATTCAAGCTCACCTCCGTCACAAGAATATCTTGCGT
ATGTACGGCTACTTTTTCGACGACAAGCGTATTTATCTCATCTTGGAGTA
CGCGCCTCACGGCGAGCTCTACAAGCACCTGACCAACCAAGGTCGGTTCT
CCGAACGTCAGTCTGCGCAATTTATCCTCGAGATGTCTTCCGCTCTTGGG
TACTGCCACGAGAAGCACGTCATCCATCGAGATATCAAGCCAGAGAATCT
GTTACTGGGGCCCAAGCGTGAGTTGAAGATTGCGGATTTTGGGTGGTCTG
TGCACGCGCCTTCCTCTCGCAGGGAGACCTTGTGTGGCACCTTGGATTAC
CTGCCCCCTGAGATGATAGAGGGAAAGAAGCACGACAAGTGGGTCGATGT
TTGGAGTTTGGGCGTTTTGATGTACGAGTTCTTGGTTGGCAATCCCCCCT
TTGAAGCCGAGGGGCATCAGGCGACTTACCGAAGAATTAGTCGGGTCGAC
CTGAGGTTCCCTCCCGAGGTCTCGTCCGAGGCCCAGGACTTGATTGCCAA
GCTGCTGGTCAAAGAGCCGTCGTGTCGTTTACCATTGGACAAAATTCCGA
CCCACCCTTGGGTGTTGCGAAACGCGCCACGCCATTCGTTGCAGCAATAC
CTGCCGGCCGGGACATTTGCGGCGTTATTTTCCTCGCCCCCTGCTGCTAC
TGCTGCTGCTCCGGTGGGCGGAAGTGATGGGAGAAATGGAGGAAAGTAGA
AGGTGATGGTAGTGGTAGAGAGAGGAAAGGTAGGAGGATGGGAGGGTGAG
ATGGATTTGTACGTAGGAGGGGGAAGAGGGAGGCAGAGAATAATTAAACT
GAGCGAATGGTGAGGAAGAGAGAAGGAATCTGGAAGGAAGGGAAGGTGAA
AAGGATTTGCCATGACAAGGAATGAGCAGTTGTCAATGCGCAGTATTTGG
TGCGAGGAGAAGAGTCGATGGAGAGAGGGAAGAAGGAAGACAGTGCGGCG
TGTGGGGCCTCATTGCAACCGAAAGGTACACACGTCAGTCTGCTATTTGG
CGTATCAATTTTAAGAAAGTGAAAAGACAGATTAGACATATGACTTTAAA
AACGCTCGAGAAAAATACCGGAAAGACCCTTTGGATGGATATGGGGACCT
AGGTTCCA
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protein sequence of NO06G03710.2

>NO06G03710.2-protein ID=NO06G03710.2-protein|Name=NO06G03710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MSESNTRLSSPLRKMTVEDKENMPVNPNTTSTSGSSSSNNSNSSHDNLKK
APSSSSSREPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREKCTQFIVAI
KVLEKRQLFRSSVEHQLRREVGSVRCLCVRACSLVLCLRRVVSHAPPPPQ
KIEIQAHLRHKNILRMYGYFFDDKRIYLILEYAPHGELYKHLTNQGRFSE
RQSAQFILEMSSALGYCHEKHVIHRDIKPENLLLGPKRELKIADFGWSVH
APSSRRETLCGTLDYLPPEMIEGKKHDKWVDVWSLGVLMYEFLVGNPPFE
AEGHQATYRRISRVDLRFPPEVSSEAQDLIAKLLVKEPSCRLPLDKIPTH
PWVLRNAPRHSLQQYLPAGTFAALFSSPPAATAAAPVGGSDGRNGGK*
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mRNA from alignment at chr6:1026964..1030252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03710.2 ID=NO06G03710.2|Name=NO06G03710.2|organism=Nannochloropsis oceanica|type=mRNA|length=3289bp|location=Sequence derived from alignment at chr6:1026964..1030252- (Nannochloropsis oceanica)
TCCTATTTCCTTCTGTCTTTTCTTTTTCTTTTCATTCATTCATTTCTTAC GTTGTCTTGCGTTTCAATGTCCAAGGCGCCTGATTACCATCTCTCTCCCG CTTATACCCTCCCCGTCCATTCCCCTGTCCTCCTCTTCCTTCCCCTCCTC CTCTTCCTCCTTTTTCTCGCCTCTGAAACGGTGGGTGGACTTTCCCCGTC GTGTCCAAGATAACCAGGAGCTGTTTCCGTGCGCATCGATCATCCGCCCT TACCACCGACGAAGTAATCGCCTGCCTGAACCCTTCAAAATTGAAATTCA ACGGAAGTTTCAACGCGATGTATAGTGCATGGGGCTTGAGACGCTCACAG AGCTGAGATAAAGGAAGGTCCCCGAAGGTCAAATCTACCATGTCATTCTC AGCGTACGACTTTCCTCCCCAGGGCGGATCGAGGAACACTACATCTTGTT TCAACTCCTTTAACTTCTCCAGAAAATCACCGCGATACGTCGTGACAGTA TCAGTTAATCCCAAGGCCTTCACATTGTGTTCTAATAGGCTGAACCGCTG CGGGTCGAGCTCCACGGCTTGGACCTGGCGGAAATGCTGCGCAAACGACA GGACGTTCCCGCCCGCAGCAGCGCAGCCATCAGTGATCACGGCTCGGTCC CCCACAAGTTGCTGCAAAATCCGCGAAGTGTTGTTGGCTGAGCGCGTGTC CGTGATGCTGTACATGGAGACCTCATCCAAGGCCAGTAGGGCGCGTTGGG CCGGGGAATAGTTGTAGAAGATGGCCCCCCATTTGTACTGGATCTCGTCG TTTTCGCTGGGCACTTCCTTGCCATAAATGATGCGGGACACCGAGGTAGA GGTATCGACAGCAGCAGCCTGGGAAGTCGCGCGGGCGTCATCGTTAGATT GGCCTGGTGGTGGTGTGGGTGCCTCGCTGGCAGCGGCAGCTTTGTTCGTT GAGGAGGACGAGGGGGAGGCGGAGAAGGAGGATGACGATGATGATGCTGG GGCTTGCGCTTGTGCTGTCTGCGTGTTGTAGCCGTCCTCTTTTTCCTTCT CCATCAGCTGGTAAAGGCCAGCTGTGTCGTGGAATTGGTGGTGTGGCGCG CGTGAGACAGGCAAGACGAACGATATGTGGGTCGGCGATCCGTCATCGCT GGAGGAAGCTCAACAAGCAAGGCCCATCGCCTTAGCAGAGTAGGAGCAAC CAGCCATGCCTCATCGGTCTCAAGACTTTCAACCAAAAGCTACACCACAC AGACAGCACTTGCGAAGCACTATCAGACACTTTTCACAGACGCTTGTGCA TTGAACCCCATCCCTCCGTTCGAAAGTCGCCTTAAGCTCAGAGTGCGCGT AGGACTGGCCGCTTTGGACAAACCCAACGACCGAGCCACAGCTAAATGAC CAACTAACAAGGCATCAAACTCAACAAACGCTAATGCTTAAGCCTTATTT CGTCTTCTTAATACAGGTATTAAAACCTGTGGCTACGCGTGCCTTTGGTT GGCTGCATTCTCAGTGCGACAGTCCCCCTGCAGCAAACGCCCGCCCGCCC CGCGGATGTCCGAAAGCAATACCCGTCTCTCATCCCCACTACGCAAAATG ACGGTCGAAGACAAAGGTATGTGTAATTTCACTGTTCATCAATGGTTGCG TGCTGTTAAGAAAGCGGCGTGCTGGGTCCTCTTTTGCATCGATCCCCTCC TTCTCCTCTCTGATCCCTTTCCCCACCTCACCTCTTCTCCCCACCAGAAA ACATGCCGGTGAACCCCAACACCACCAGCACCTCAGGCAGCAGCAGCAGT AACAATAGCAATAGCAGTCATGACAACCTCAAGAAGGCCCCCTCCTCTTC TTCGTCGCGCGAGCCCGCCGACCCGGACCGTGTGTGGTCTTTGAACGACT TTGATATTGGCCGGAAGCTGGGCCGCGGCAAGTTTGGTGCTGTGTATCTC GCCCGGGAAAAGTGCACGCAGTTCATCGTTGCCATCAAGGTCCTAGAAAA GCGGCAGCTCTTTCGTTCGTCGGTCGAGCACCAACTGCGGCGGGAGGTAG GTTCTGTCCGGTGTCTTTGTGTGCGTGCGTGTTCCCTTGTTTTGTGTCTA AGACGAGTAGTTTCTCACGCCCCTCCCCCCCCCCAAAAGATCGAAATTCA AGCTCACCTCCGTCACAAGAATATCTTGCGTATGTACGGCTACTTTTTCG ACGACAAGCGTATTTATCTCATCTTGGAGTACGCGCCTCACGGCGAGCTC TACAAGCACCTGACCAACCAAGGTCGGTTCTCCGAACGTCAGTCTGCGCA ATTTATCCTCGAGATGTCTTCCGCTCTTGGGTACTGCCACGAGAAGCACG TCATCCATCGAGATATCAAGCCAGAGAATCTGTTACTGGGGCCCAAGCGT GAGTTGAAGATTGCGGATTTTGGGTGGTCTGTGCACGCGCCTTCCTCTCG CAGGGAGACCTTGTGTGGCACCTTGGATTACCTGCCCCCTGAGATGATAG AGGGAAAGAAGCACGACAAGTGGGTCGATGTTTGGAGTTTGGGCGTTTTG ATGTACGAGTTCTTGGTTGGCAATCCCCCCTTTGAAGCCGAGGGGCATCA GGCGACTTACCGAAGAATTAGTCGGGTCGACCTGAGGTTCCCTCCCGAGG TCTCGTCCGAGGCCCAGGACTTGATTGCCAAGCTGCTGGTCAAAGAGCCG TCGTGTCGTTTACCATTGGACAAAATTCCGACCCACCCTTGGGTGTTGCG AAACGCGCCACGCCATTCGTTGCAGCAATACCTGCCGGCCGGGACATTTG CGGCGTTATTTTCCTCGCCCCCTGCTGCTACTGCTGCTGCTCCGGTGGGC GGAAGTGATGGGAGAAATGGAGGAAAGTAGAAGGTGATGGTAGTGGTAGA GAGAGGAAAGGTAGGAGGATGGGAGGGTGAGATGGATTTGTACGTAGGAG GGGGAAGAGGGAGGCAGAGAATAATTAAACTGAGCGAATGGTGAGGAAGA GAGAAGGAATCTGGAAGGAAGGGAAGGTGAAAAGGATTTGCCATGACAAG GAATGAGCAGTTGTCAATGCGCAGTATTTGGTGCGAGGAGAAGAGTCGAT GGAGAGAGGGAAGAAGGAAGACAGTGCGGCGTGTGGGGCCTCATTGCAAC CGAAAGGTACACACGTCAGTCTGCTATTTGGCGTATCAATTTTAAGAAAG TGAAAAGACAGATTAGACATATGACTTTAAAAACGCTCGAGAAAAATACC GGAAAGACCCTTTGGATGGATATGGGGACCTAGGTTCCA
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Coding sequence (CDS) from alignment at chr6:1026964..1030252-

>NO06G03710.2 ID=NO06G03710.2|Name=NO06G03710.2|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr6:1026964..1030252- (Nannochloropsis oceanica)
ATGTCCGAAAGCAATACCCGTCTCTCATCCCCACTACGCAAAATGACGGT
CGAAGACAAAGAAAACATGCCGGTGAACCCCAACACCACCAGCACCTCAG
GCAGCAGCAGCAGTAACAATAGCAATAGCAGTCATGACAACCTCAAGAAG
GCCCCCTCCTCTTCTTCGTCGCGCGAGCCCGCCGACCCGGACCGTGTGTG
GTCTTTGAACGACTTTGATATTGGCCGGAAGCTGGGCCGCGGCAAGTTTG
GTGCTGTGTATCTCGCCCGGGAAAAGTGCACGCAGTTCATCGTTGCCATC
AAGGTCCTAGAAAAGCGGCAGCTCTTTCGTTCGTCGGTCGAGCACCAACT
GCGGCGGGAGGTAGGTTCTGTCCGGTGTCTTTGTGTGCGTGCGTGTTCCC
TTGTTTTGTGTCTAAGACGAGTAGTTTCTCACGCCCCTCCCCCCCCCCAA
AAGATCGAAATTCAAGCTCACCTCCGTCACAAGAATATCTTGCGTATGTA
CGGCTACTTTTTCGACGACAAGCGTATTTATCTCATCTTGGAGTACGCGC
CTCACGGCGAGCTCTACAAGCACCTGACCAACCAAGGTCGGTTCTCCGAA
CGTCAGTCTGCGCAATTTATCCTCGAGATGTCTTCCGCTCTTGGGTACTG
CCACGAGAAGCACGTCATCCATCGAGATATCAAGCCAGAGAATCTGTTAC
TGGGGCCCAAGCGTGAGTTGAAGATTGCGGATTTTGGGTGGTCTGTGCAC
GCGCCTTCCTCTCGCAGGGAGACCTTGTGTGGCACCTTGGATTACCTGCC
CCCTGAGATGATAGAGGGAAAGAAGCACGACAAGTGGGTCGATGTTTGGA
GTTTGGGCGTTTTGATGTACGAGTTCTTGGTTGGCAATCCCCCCTTTGAA
GCCGAGGGGCATCAGGCGACTTACCGAAGAATTAGTCGGGTCGACCTGAG
GTTCCCTCCCGAGGTCTCGTCCGAGGCCCAGGACTTGATTGCCAAGCTGC
TGGTCAAAGAGCCGTCGTGTCGTTTACCATTGGACAAAATTCCGACCCAC
CCTTGGGTGTTGCGAAACGCGCCACGCCATTCGTTGCAGCAATACCTGCC
GGCCGGGACATTTGCGGCGTTATTTTCCTCGCCCCCTGCTGCTACTGCTG
CTGCTCCGGTGGGCGGAAGTGATGGGAGAAATGGAGGAAAGTAG
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Synonyms
Publications