NO06G03680.1, NO06G03680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03680.1
Unique NameNO06G03680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length255
Alignment locationchr6:1015542..1015796 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1015542..1015796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03680.1 vs.
Match: EWM26353.1 (diphthamide biosynthesis protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 162.2 bits (409), Expect = 7.300e-37
Identity = 73/84 (86.90%), Postives = 80/84 (95.24%), Query Frame = 0 
Query:    1 MSIYEEVEIEDMEFEEDEQQYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYDEESLPPLKPDDAGGSTGAGVAVSVH 85
            MSIYEEVEIEDM+FEE+EQ YTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVY+EE+LPPLK  +AGGS GAG+AV+VH
Sbjct:   61 MSIYEEVEIEDMDFEEEEQHYTYPCPCGDKFVITLAELWDGEDVAPCPSCTLRIRVVYEEEALPPLKASEAGGSAGAGMAVAVH 144
The following BLAST results are available for this feature:
BLAST of NO06G03680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26353.17.300e-3786.90diphthamide biosynthesis protein 3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03680NO06G03680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03680.1NO06G03680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03680.1.cds1NO06G03680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03680.1 ID=NO06G03680.1|Name=NO06G03680.1|organism=Nannochloropsis oceanica|type=mRNA|length=255bp
ATGAGCATCTACGAAGAGGTGGAGATCGAGGACATGGAGTTTGAAGAAGA
TGAGCAACAATACACCTACCCGTGTCCATGTGGGGATAAGTTTGTCATTA
CTCTCGCAGAGCTGTGGGATGGGGAGGACGTGGCGCCTTGCCCCAGCTGC
ACCCTCCGCATCCGGGTGGTGTACGATGAGGAGTCCTTGCCGCCACTAAA
GCCCGACGATGCAGGGGGATCGACGGGGGCCGGTGTGGCTGTGTCGGTGC
ACTAA
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protein sequence of NO06G03680.1

>NO06G03680.1-protein ID=NO06G03680.1-protein|Name=NO06G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MSIYEEVEIEDMEFEEDEQQYTYPCPCGDKFVITLAELWDGEDVAPCPSC
TLRIRVVYDEESLPPLKPDDAGGSTGAGVAVSVH*
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mRNA from alignment at chr6:1015542..1015796+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03680.1 ID=NO06G03680.1|Name=NO06G03680.1|organism=Nannochloropsis oceanica|type=mRNA|length=255bp|location=Sequence derived from alignment at chr6:1015542..1015796+ (Nannochloropsis oceanica)
ATGAGCATCTACGAAGAGGTGGAGATCGAGGACATGGAGTTTGAAGAAGA
TGAGCAACAATACACCTACCCGTGTCCATGTGGGGATAAGTTTGTCATTA
CTCTCGCAGAGCTGTGGGATGGGGAGGACGTGGCGCCTTGCCCCAGCTGC
ACCCTCCGCATCCGGGTGGTGTACGATGAGGAGTCCTTGCCGCCACTAAA
GCCCGACGATGCAGGGGGATCGACGGGGGCCGGTGTGGCTGTGTCGGTGC
ACTAA
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Coding sequence (CDS) from alignment at chr6:1015542..1015796+

>NO06G03680.1 ID=NO06G03680.1|Name=NO06G03680.1|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at chr6:1015542..1015796+ (Nannochloropsis oceanica)
ATGAGCATCTACGAAGAGGTGGAGATCGAGGACATGGAGTTTGAAGAAGA
TGAGCAACAATACACCTACCCGTGTCCATGTGGGGATAAGTTTGTCATTA
CTCTCGCAGAGCTGTGGGATGGGGAGGACGTGGCGCCTTGCCCCAGCTGC
ACCCTCCGCATCCGGGTGGTGTACGATGAGGAGTCCTTGCCGCCACTAAA
GCCCGACGATGCAGGGGGATCGACGGGGGCCGGTGTGGCTGTGTCGGTGC
ACTAA
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Synonyms
Publications