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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:988011..991201 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03600.2 vs.
Match: EWM26364.1 (fumarate hydratase [Nannochloropsis gaditana]) HSP 1 Score: 775.4 bits (2001), Expect = 1.000e-220 Identity = 381/451 (84.48%), Postives = 417/451 (92.46%), Query Frame = 0
Query: 23 SMGLIQVPVDRYWGAQTQRSLKYFNIGHDTMPREVIQALGVIKKAAAKTNASLGLLPLDIALLIDKAADEVIAGKLDDHFPLRIWQTGSGTQSNMNANEVISNRAIEMAGGKMGSKDPVHSNDHVNRSQSSNDVFPTAMHVAAVLYISDFLLPELERLHADLEEKAGKWKGIVKIGRTHLQDAVPMTLGQEFGGYAAAVEVDIKAIRHALQDLYFLAQGGTAVGTGLNTHPDFAVAVAKEISVLTGKPFVSAPNKFHALASHGPMALMSGALKALAGDLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDAAIGFASSQGAFELNVFKPVIIHNLLQSCRLMHDSARNFREYALEGLSVNEDKLNKYVHESLMTVTALNPHIGYDKAAKIAMKAHHEKSTLREAALALGYLTAEEFDEWLQPEKMV 474
SMG+IQVP D+YWGAQTQRSLKYFNIGH+TMPREVIQALG++KKAAAKTNA LGLL DIA LID+AADEVI+G LD HFPLRIWQTGSGTQSNMNANEVISNRAIEMAGG MGSK PVH+NDHVNRSQSSNDVFPTAMHVAAVLY+SD LLP+L L LE+KA ++G+VKIGRTHLQDAVPMTLGQEFGGYAAA+EVD++ I HALQ+LY LAQGGTAVGTGLNTHP FAV VA EI+ LTGKPFV+APNKF ALASHGP+ L+SGALKA A DLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEA+TMVC QVMGNDAAIGFA+SQGAFELNVFKPVII NL+QSC L+HDSARNFREYALEGL+VN+D+++KYVHESLMTVTALNPHIGYDKAA+IA KAHHEKSTL+EAALALG LTAE++D W+QPEKMV
Sbjct: 89 SMGVIQVPADKYWGAQTQRSLKYFNIGHETMPREVIQALGIVKKAAAKTNAELGLLTPDIAALIDRAADEVISGALDAHFPLRIWQTGSGTQSNMNANEVISNRAIEMAGGTMGSKLPVHANDHVNRSQSSNDVFPTAMHVAAVLYVSDALLPQLRSLQGALEDKAQAFQGMVKIGRTHLQDAVPMTLGQEFGGYAAALEVDVQGIAHALQELYPLAQGGTAVGTGLNTHPKFAVTVAAEIARLTGKPFVTAPNKFQALASHGPVVLLSGALKAAAADLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNDAAIGFAASQGAFELNVFKPVIIQNLMQSCHLLHDSARNFREYALEGLTVNQDRIDKYVHESLMTVTALNPHIGYDKAAQIAKKAHHEKSTLKEAALALGILTAEQYDAWVQPEKMV 539
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03600.2 ID=NO06G03600.2|Name=NO06G03600.2|organism=Nannochloropsis oceanica|type=mRNA|length=2605bp
AGAAGAGCTATATTTTTAATCATTCAATTATTTTATGAGGGGATGGTGGT
TGGGTTTGGAATGTTGAAGGATGTGAAAGTAAAGTGTACCACTGTGAGGA
ATTGTGAACCAATTCCCATCCCTCGTCCCAAATCTCAAGATATACACTTA
TTTTTTGGGTCGTGGTTTGCGGCCCGAATCGTGACCCATATTGATTTTTC
GTCCCAATATTCCGCGACCCAAATCCCAAGATATACACTCCCTAATTAAA
TAATCCGGCGACGCTAGCGAGTTCGATTATCTAAGTCGAATCTGGTGGGG
ACGCTTGTGCATGTGGGCACAAGCATTCCTTTGTCATTGCTGGGGGCATG
GGGCTCTACAGGAGCCTTTCCAAAATACACAGAACAAATCCATCGATTAA
TCAACGCCTTCAACTCCCGCAACGCAGGCACTTGCACCATCAATACTGCC
TGCAAGGCGTGGTACATAACGTTTTTCAGCCTTCAGCACCACGACATGCG
TTGGTTGCCGACGCCATCCTTCTTGCTGTCCACTACCTCTTCCGCTTTAC
GCTTTTCTTCCCCTTCCGTCTTGCGACGCCCATCCACTCTCGTTCAACAA
CAGGGTCTGCTAGCACTTGGCTTCACCCGTCCCTTCTTGTTTCACCTCCA
GCACCACCACCAGCAGCGGCACTCTTTACCGGAGCTCTCGCAACGTTTGT
CCCCTTCCTTAAATATCCGCGCACATTCGACCACCGCGTCCACCACGACC
ATGGCCACTCGCGAGGAAAAGGACAGGTACGTGCGCACACTTTTCTGGAC
AGAGGACGAAAAGGCATCTTCTTCCTTCGGCCGCCCTCTTGTCGGTAGCT
CGGCCACATCTTGCTTATGTAAATATGGGAATGTGCATAGCACAAGCTGG
GTATTGTGCTTGGTCATATCGCGGCACTTATGGTCTTATCAGATGCATCC
TCAATCTACCCCACTCCCTACTCTCCCACATCTCTCATATCACTCAGCAT
GGGCCTTATCCAGGTCCCAGTCGACCGCTATTGGGGTGCACAGACGCAGC
GTTCCCTCAAGTACTTCAACATTGGGCATGATACCATGCCCCGAGAAGTC
ATCCAGGCCCTGGGTGTTATAAAAAAAGCAGCGGCGAAAACTAATGCTTC
TCTCGGTCTCCTCCCTCTTGATATTGCCCTCCTGATCGATAAAGCCGCAG
ATGAGGTGATTGCTGGAAAGCTCGACGATCATTTCCCTTTGCGGATCTGG
CAGACGGGCTCAGGGACCCAAAGTAACATGAATGCAAACGAAGTAATTTC
CAATCGGGCGATTGAGATGGCCGGGGGTAAGATGGGGAGTAAAGACCCGG
TGCATTCCAATGACCACGTGAACAGGTCGCAGAGTAGCAACGACGTCTTC
CCGACGGCTATGCATGTGGCGGCTGTGTTGTATATATCCGATTTCCTCCT
ACCGGAGCTCGAGCGGTTGCACGCCGACTTGGAGGAGAAAGCAGGGAAGT
GGAAGGGGATCGTGAAAATTGGACGCACGCACTTGCAGGACGCCGTGCCC
ATGACCCTAGGACAGGAATTCGGCGGGTACGCGGCGGCTGTGGAAGTGGA
CATCAAGGCCATCCGGCACGCCCTCCAAGATCTCTATTTCCTTGCTCAAG
GCGGAACAGCCGTAGGCACGGGTCTTAACACCCACCCTGACTTCGCCGTT
GCGGTAGCCAAGGAAATTTCCGTCCTGACCGGCAAGCCCTTCGTTTCCGC
CCCCAATAAATTCCACGCACTCGCCTCGCATGGCCCGATGGCGTTGATGA
GCGGGGCCTTGAAGGCTCTTGCGGGCGACCTCTTCAAGATTGCCAACGAC
GTGCGTTTCCTCGCTTCGGGCCCAAGGTGTGGGCTGGGTGAACTCAATTT
ACCGGAGAATGAGCCCGGCTCAAGCATCATGCCCGGCAAGGTTAACCCGA
CGCAATGCGAAGCCTTGACGATGGTCTGTGTCCAGGTAATGGGCAACGAC
GCCGCGATTGGATTTGCGTCAAGCCAGGGGGCGTTTGAATTGAATGTTTT
CAAGCCGGTGATTATCCATAACCTCTTGCAGTCCTGTCGGCTGATGCATG
ACTCGGCCAGGAACTTCCGAGAGTACGCGTTGGAAGGCCTAAGCGTGAAT
GAAGACAAGCTCAACAAGTATGTCCACGAGTCCCTTATGACGGTGACGGC
TCTCAACCCCCACATCGGGTATGATAAGGCCGCGAAAATTGCCATGAAAG
CCCACCATGAGAAATCGACACTGAGAGAAGCGGCTTTGGCGCTAGGCTAC
CTGACGGCGGAGGAATTTGATGAGTGGTTGCAACCGGAGAAAATGGTCTA
AGAAGGGACGAAGGTGAGGGACGGATGGATGGGGGGACGAGACGTTAGGG
TGGGTTGTGTAGGTATCCCAGTGGGTGGAGACAGGGAAATAAGAGGTGGT
ACGTTTGGGGTGGTTAGAGTCAGATGGTGAGGGTGAATAAGCGCGCGCAT
GACATAGTCACAACAAGAACAACAGCGTGAGATTACGAAGAAGGCTGTAA
ACACATGAAGAGGGACGACAAGTAGAAGCAGCGCTAGACATGTTAATATT
CTCAA back to topprotein sequence of NO06G03600.2 >NO06G03600.2-protein ID=NO06G03600.2-protein|Name=NO06G03600.2|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MVLSDASSIYPTPYSPTSLISLSMGLIQVPVDRYWGAQTQRSLKYFNIGH
DTMPREVIQALGVIKKAAAKTNASLGLLPLDIALLIDKAADEVIAGKLDD
HFPLRIWQTGSGTQSNMNANEVISNRAIEMAGGKMGSKDPVHSNDHVNRS
QSSNDVFPTAMHVAAVLYISDFLLPELERLHADLEEKAGKWKGIVKIGRT
HLQDAVPMTLGQEFGGYAAAVEVDIKAIRHALQDLYFLAQGGTAVGTGLN
THPDFAVAVAKEISVLTGKPFVSAPNKFHALASHGPMALMSGALKALAGD
LFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVC
VQVMGNDAAIGFASSQGAFELNVFKPVIIHNLLQSCRLMHDSARNFREYA
LEGLSVNEDKLNKYVHESLMTVTALNPHIGYDKAAKIAMKAHHEKSTLRE
AALALGYLTAEEFDEWLQPEKMV* back to topmRNA from alignment at chr6:988011..991201+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03600.2 ID=NO06G03600.2|Name=NO06G03600.2|organism=Nannochloropsis oceanica|type=mRNA|length=3191bp|location=Sequence derived from alignment at chr6:988011..991201+ (Nannochloropsis oceanica)
AGAAGAGCTATATTTTTAATCATTCAATTATTTTATGAGGGGATGGTGGT
TGGGTTTGGAATGTTGAAGGATGTGAAAGTAAAGTGTACCACTGTGAGGA
ATTGTGAACCAATTCCCATCCCTCGTCCCAAATCTCAAGATATACACTTA
TTTTTTGGGTCGTGGTTTGCGGCCCGAATCGTGACCCATATTGATTTTTC
GTCCCAATATTCCGCGACCCAAATCCCAAGATATACACTCCCTAATTAAA
TAATCCGGCGACGCTAGCGAGTTCGATTATCTAAGTCGAATCTGGTGGGG
ACGCTTGTGCATGTGGGCACAAGCATTCCTTTGTCATTGCTGGGGGCATG
GGGCTCTACAGGAGCCTTTCCAAAATACACAGAACAAATCCATCGATTAA
TCAACGCCTTCAACTCCCGCAACGCAGGCACTTGCACCATCAATACTGCC
TGCAAGGCGTGGTACATAACGTTTTTCAGCCTTCAGCACCACGACATGCG
TTGGTTGCCGACGCCATCCTTCTTGCTGTCCACTACCTCTTCCGCTTTAC
GCTTTTCTTCCCCTTCCGTCTTGCGACGCCCATCCACTCTCGTTCAACAA
CAGGGTCTGCTAGCACTTGGCTTCACCCGTCCCTTCTTGTTTCACCTCCA
GCACCACCACCAGCAGCGGCACTCTTTACCGGAGCTCTCGCAACGTTTGT
CCCCTTCCTTAAATATCCGCGCACATTCGACCACCGCGTCCACCACGACC
ATGGCCACTCGCGAGGAAAAGGACAGGTACGTGCGCACACTTTTCTGGAC
AGAGGACGAAAAGGCATCTTCTTCCTTCGGCCGCCCTCTTGTCGGTAGCT
CGGCCACATCTTGCTTATGTAAATATGGGAATGTGCATAGCACAAGCTGG
GTATTGTGCTTGGTCATATCGCGGCACTTATGGTCTTATCAGATGCATCC
TCAATCTACCCCACTCCCTACTCTCCCACATCTCTCATATCACTCAGCAT
GGGCCTTATCCAGGTCCCAGTCGACCGCTATTGGGGTGCACAGACGCAGC
GTTCCCTCAAGTACTTCAACATTGGGCATGATACCATGCCCCGAGAAGTC
ATCCAGGTGAGGAGTCTCCATGAGACACTCCCTCCGTCCGTCCCTCCCTC
CCTCTCTCCACAGTGTTGAACAGCTTATATCCTGTGAAATCGTATAAAAT
TCGCATTGTTTTCTATTGACAAATAGCTGTGATGGTCGCGCTCACCTGTA
GTCTTCTACTCTCCCTCTTTCCCTCCTTACAGGCCCTGGGTGTTATAAAA
AAAGCAGCGGCGAAAACTAATGCTTCTCTCGGTCTCCTCCCTCTTGATAT
TGCCCTCCTGATCGATAAAGCCGCAGATGAGGTGATTGCTGGAAAGCTCG
ACGATCATTTCCCTTTGCGGATCTGGCAGACGGGCTCAGGGACCCAAAGT
AACATGAATGCAAACGAAGTAATTTCCAATCGGGCGATTGAGATGGCCGG
GGGTAAGATGGGGAGTAAAGACCCGGTGCATTCCAATGACCACGTGAACA
GGTCGCAGAGTAGCAACGACGTCTTCCCGACGGCTATGCATGTGGCGGCT
GTGTTGTATATATCCGATTTCCTCCTACCGGAGCTCGAGCGGTTGCACGC
CGACTTGGAGGAGAAAGTGAGCAAAGAGGAGAGGGAGGGAGGGAAAGGCT
GTACAAGAGTGATTGAGGGTAGCTTTCACTGATCAAGTCTAGAAAGGAAG
GGTTCCGTTCGCTCACATAGACCTATACCACGTGCATTAATAAGGCAGGG
AAGTGGAAGGGGATCGTGAAAATTGGACGCACGCACTTGCAGGACGCCGT
GCCCATGACCCTAGGACAGGAATTCGGCGGGTACGCGGCGGCTGTGGAAG
GTAATATTGACATTTTGCGGAGATTCTTCGAGTCGTGGGCTCATACGTCT
TCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCTCCGCTCAGTGGACATCAAGGCCATCCGGCACGCCCTCCAAGATCTC
TATTTCCTTGCTCAAGGCGGAACAGCCGTAGGCACGGGTCTTAACACCCA
CCCTGACTTCGCCGTTGCGGTAGCCAAGGAAATTTCCGTCCTGACCGGCA
AGCCCTTCGTTTCCGCCCCCAATAAATTCCACGCACTCGCCTCGCATGGC
CCGATGGCGTTGATGAGCGGGGCCTTGAAGGCTCTTGCGGGCGACCTCTT
CAAGATTGCCAACGACGTGCGTTTCCTCGCTTCGGGCCCAAGGTGTGGGC
TGGGTGAACTCAATTTACCGGAGAATGAGCCCGGCTCAAGCATCATGCCC
GGCAAGGTTAACCCGACGCAATGCGAAGCCTTGACGATGGTCTGTGTCCA
GGTAATGGGCAACGACGCCGCGATTGGATTTGCGTCAAGCCAGGGGGCGT
TTGAATTGAATGTTTTCAAGCCGGTGATTATCCATAACCTCTTGCAGTCC
TGTCGGCTGATGCATGACTCGGCCAGGTAGGGAGGGGGAGAGGAGGAAGG
CAGGGAGGCAGGGAGGGAGGGAGGCAGGGAGGGAGGGAGGGATTGGAAAG
ACATGTGAGGGGCGCACTGGATGTCGTCGTATATGCATTTATCCCATTAC
CCTCCCCCTCTTCCTCCTTCCCTCTCCCTCCCATTTTTTGTCTCAGGAAC
TTCCGAGAGTACGCGTTGGAAGGCCTAAGCGTGAATGAAGACAAGCTCAA
CAAGTATGTCCACGAGTCCCTTATGACGGTGACGGCTCTCAACCCCCACA
TCGGGTATGATAAGGCCGCGAAAATTGCCATGAAAGCCCACCATGAGAAA
TCGACACTGAGAGAAGCGGCTTTGGCGCTAGGCTACCTGACGGCGGAGGA
ATTTGATGAGTGGTTGCAACCGGAGAAAATGGTCTAAGAAGGGACGAAGG
TGAGGGACGGATGGATGGGGGGACGAGACGTTAGGGTGGGTTGTGTAGGT
ATCCCAGTGGGTGGAGACAGGGAAATAAGAGGTGGTACGTTTGGGGTGGT
TAGAGTCAGATGGTGAGGGTGAATAAGCGCGCGCATGACATAGTCACAAC
AAGAACAACAGCGTGAGATTACGAAGAAGGCTGTAAACACATGAAGAGGG
ACGACAAGTAGAAGCAGCGCTAGACATGTTAATATTCTCAA back to topCoding sequence (CDS) from alignment at chr6:988011..991201+ >NO06G03600.2 ID=NO06G03600.2|Name=NO06G03600.2|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr6:988011..991201+ (Nannochloropsis oceanica)
ATGGTCTTATCAGATGCATCCTCAATCTACCCCACTCCCTACTCTCCCAC
ATCTCTCATATCACTCAGCATGGGCCTTATCCAGGTCCCAGTCGACCGCT
ATTGGGGTGCACAGACGCAGCGTTCCCTCAAGTACTTCAACATTGGGCAT
GATACCATGCCCCGAGAAGTCATCCAGGCCCTGGGTGTTATAAAAAAAGC
AGCGGCGAAAACTAATGCTTCTCTCGGTCTCCTCCCTCTTGATATTGCCC
TCCTGATCGATAAAGCCGCAGATGAGGTGATTGCTGGAAAGCTCGACGAT
CATTTCCCTTTGCGGATCTGGCAGACGGGCTCAGGGACCCAAAGTAACAT
GAATGCAAACGAAGTAATTTCCAATCGGGCGATTGAGATGGCCGGGGGTA
AGATGGGGAGTAAAGACCCGGTGCATTCCAATGACCACGTGAACAGGTCG
CAGAGTAGCAACGACGTCTTCCCGACGGCTATGCATGTGGCGGCTGTGTT
GTATATATCCGATTTCCTCCTACCGGAGCTCGAGCGGTTGCACGCCGACT
TGGAGGAGAAAGCAGGGAAGTGGAAGGGGATCGTGAAAATTGGACGCACG
CACTTGCAGGACGCCGTGCCCATGACCCTAGGACAGGAATTCGGCGGGTA
CGCGGCGGCTGTGGAAGTGGACATCAAGGCCATCCGGCACGCCCTCCAAG
ATCTCTATTTCCTTGCTCAAGGCGGAACAGCCGTAGGCACGGGTCTTAAC
ACCCACCCTGACTTCGCCGTTGCGGTAGCCAAGGAAATTTCCGTCCTGAC
CGGCAAGCCCTTCGTTTCCGCCCCCAATAAATTCCACGCACTCGCCTCGC
ATGGCCCGATGGCGTTGATGAGCGGGGCCTTGAAGGCTCTTGCGGGCGAC
CTCTTCAAGATTGCCAACGACGTGCGTTTCCTCGCTTCGGGCCCAAGGTG
TGGGCTGGGTGAACTCAATTTACCGGAGAATGAGCCCGGCTCAAGCATCA
TGCCCGGCAAGGTTAACCCGACGCAATGCGAAGCCTTGACGATGGTCTGT
GTCCAGGTAATGGGCAACGACGCCGCGATTGGATTTGCGTCAAGCCAGGG
GGCGTTTGAATTGAATGTTTTCAAGCCGGTGATTATCCATAACCTCTTGC
AGTCCTGTCGGCTGATGCATGACTCGGCCAGGAACTTCCGAGAGTACGCG
TTGGAAGGCCTAAGCGTGAATGAAGACAAGCTCAACAAGTATGTCCACGA
GTCCCTTATGACGGTGACGGCTCTCAACCCCCACATCGGGTATGATAAGG
CCGCGAAAATTGCCATGAAAGCCCACCATGAGAAATCGACACTGAGAGAA
GCGGCTTTGGCGCTAGGCTACCTGACGGCGGAGGAATTTGATGAGTGGTT
GCAACCGGAGAAAATGGTCTAA back to top
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