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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:985125..988008 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03590.2 vs.
Match: EWM26383.1 (major facilitator superfamily [Nannochloropsis gaditana]) HSP 1 Score: 694.9 bits (1792), Expect = 2.300e-196 Identity = 380/574 (66.20%), Postives = 428/574 (74.56%), Query Frame = 0
Query: 76 MRACIVVFSLLVLTGQVITALGVTIQSMTIMLVGRLIFGLGGECLVVGQSAFISAWFHSREVAFALGFTLSVSRLGSVLNDWGSPYIAQKIGVVAAFWFGALLCLGSTCTAFLLACVDKSHRSR-------GVLDDLEDTQISLATARTDTPAGAGTGRSSYSSSSPLPSAEEQMHLAAPWAAKGSYFETPHPSFYGPPPALRPAGASGGG------AGGGGGGEGP------ATMNTLVHGSQVHHEALQAKLDRLAQLDAVVDSINEDHLWHLMGFDTMFWLLACVCTLSYGAIMPFNNMAQVYLLKNYLPIHEEIPKGVDCSFRPVLPEWEDYCAEVNKVRRTAGSLQSVPFMVAGILTPLVGILIDRCGHRTLYILLGPLLLLATHFVFLVGGTSPLVPLVGLGLAYSIVAAVVWPSVPLTVHASESSKRCGTAFGILTVFQNLSMALFPMAIAALLQLTNGYVTTEYFFIVVSVAGIVAAVCLMVEDEKHGAVLRKYVVDGEETNPYHPVHPFHHGHGPHFRAWGTGRTHEEGEEGRD----GEGERRPLTGFGVRDAGSRKEYSAISV 627
MRACIVVFSLLVL GQ+ITALG+T+ SM +ML+GRLIFGLGGECLVVGQSAFISAWFHSREVAFALGFTLSVSR GSVLNDWGSP+IA+K VV AFWFGALLCL ST TAFLLAC+D +HRSR VL T ++ A ++ P G S S S P + E L +G+YFETPHPSFYGPPP +S A EGP AT +TLV G Q HEAL+A+L+ LAQLDA VD+I+EDHLWHLMGFDTMFW+LA VC L YGAIMPFNN+AQVYLLK YLPIH P+GVDCSFRPVLPEWE YCAEV V +G LQSVPF++AG+LTPL+GI+IDR G RTLY+LLGPLLLLATHF+ LVGGTSP+VPL GLGLAYSI+AAV+WPSVPLTVHASESS+RCGTAFGILTVFQNLSMALFPMA+AAL + + YVTTEYFFI VSV G++ AVCLMVEDEKHGAVLRKYVVDGEETNPYHP+HPFHHGH P E EE + G E R LT ++YS +SV
Sbjct: 1 MRACIVVFSLLVLLGQLITALGITVHSMGLMLLGRLIFGLGGECLVVGQSAFISAWFHSREVAFALGFTLSVSRFGSVLNDWGSPFIAEKANVVTAFWFGALLCLASTITAFLLACIDHNHRSRHHGRPDPAVLPPTAPTSLTSAGMKSPRPDGPALTPSPTSGSHPTET--EHAGLIGSLGHRGTYFETPHPSFYGPPPQHTVRSSSSSRLAPRERAWEEDREEGPVASAPAATTSTLVQGGQFPHEALRARLEHLAQLDAAVDAIDEDHLWHLMGFDTMFWILAGVCALCYGAIMPFNNVAQVYLLKYYLPIHTPPPEGVDCSFRPVLPEWEKYCAEVEHVEGLSGRLQSVPFIIAGLLTPLIGIVIDRFGFRTLYMLLGPLLLLATHFILLVGGTSPVVPLAGLGLAYSIIAAVIWPSVPLTVHASESSRRCGTAFGILTVFQNLSMALFPMAVAALSNVKHDYVTTEYFFIAVSVTGVIVAVCLMVEDEKHGAVLRKYVVDGEETNPYHPLHPFHHGHAPPHLGGEVVPARCEREESNESKANGNEENRRLTA----PKRPFRDYSTMSV 568
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03590.2 ID=NO06G03590.2|Name=NO06G03590.2|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp
CAACTACGAAGGAATGTGCCCTGTGTCAAGTAAGTGTACGGATGGAAAGA
CAGACGTGAGACCATGGCGATATCCCCTCTCCCAAAATGCATCTCCTCGT
GTTACAGGGAGGGAGATGGGCAAATGTCGCGGCCCTGACCCTTCGGGACC
TTCAGGCCCCTCGAAACTCGCACCCAAACATGTAATACATCTGAAAACTT
TGACCGTCATGGACGGGGAGAGCGTAATGCGGGCTGGAGCGGGTATATTC
AGTCATGAACATTGTCTCGACATGCGCACATCCCATCAGCATGGCTGAAA
CGGCGGCGGCAAGCGCAAACAACAACTTTCAAGTAGACGAACCCGCACGA
CTTCTGAACCACTCAAATTTATCACAACCAAAGGGCGCGCCTTCTTGTCC
TCCTCCTCCTTCACCATCCTCTCCTGCCGGTGGCGCTGCCGGTGGTAACC
GCGTAGAGCGGCGGCCGACCTGTGGATAGCCTCCCCTCCACCTCCGTCCT
TTGCATCTGCGTGCCATGATGGACATGCACACGGACCAGATCCTGACCAG
CAGAACGCCTCCGCCGATCAATGAGGTACGCCGAGAGCCCACGTTCTATC
TGCGGGCGCTCGTACTTTTGATGGCGTCCTGCCTTACAATCGGTAAGTCC
TCTTGACTTTTCTTGCCTGCCTATGAAGCGCCCTTCGATTGTACGGATGT
CACATTTATGGTGTGCAGCAGGTTTTACTTGCCACCAAAAGTAAAGAATT
TCACATTTACACGATACTCACACATCTTCATTCACTCAACCATATGCGCT
CCTACGCTTGCCGGCTTGCTTCCACAGGAAGCTATTACGTCTATGATACT
CCCTCCTCCCTGTACGCCCAAATTCAAGAGCATTTCCTTTTTTACAACAA
AGACGCCACCGCCCAAGCCTCCACCTTCGAGCTCTACTTCAACCTCCTCT
ATTCCGTTTACAGCATCCCGAACATTCTCCTCCCCTTCCTCGGTGGGCAT
CTAGTCGATACCGTAGGCATGCGGGCGTGCATTGTCGTGTTTTCGCTCTT
GGTCTTAACGGGGCAGGTAATCACGGCTTTAGGGGTTACGATTCAGTCGA
TGACAATCATGTTGGTAGGCCGACTCATCTTTGGCCTAGGAGGAGAGTGC
CTGGTGGTAGGACAAAGCGCGTTTATTTCCGCGTGGTTTCATTCAAGAGA
GGTTGCATTTGCACTGGGCTTCACTTTGTCGGTTTCCAGGTTGGGGAGTG
TATTGAACGACTGGGGAAGTCCGTATATCGCGCAGAAGATAGGGGTTGTG
GCGGCGTTCTGGTTCGGCGCCTTATTGTGTCTGGGCTCGACGTGCACTGC
CTTCTTACTGGCGTGTGTTGATAAGAGCCATCGGTCGCGTGGCGTGCTCG
ACGACCTGGAGGACACCCAGATCTCACTCGCCACTGCCCGTACTGATACT
CCTGCTGGTGCCGGCACAGGGAGATCGTCCTATTCCTCCTCCTCCCCCTT
GCCTTCCGCGGAAGAACAAATGCATTTGGCCGCCCCCTGGGCAGCGAAAG
GTTCATACTTCGAGACCCCCCACCCCTCTTTTTATGGCCCGCCTCCTGCC
CTTCGTCCTGCTGGTGCTAGTGGAGGAGGAGCAGGAGGAGGAGGGGGGGG
AGAAGGGCCGGCGACGATGAACACATTGGTGCATGGGAGCCAGGTGCATC
ATGAGGCGTTACAGGCCAAATTGGATAGGTTAGCGCAGTTGGACGCAGTG
GTGGACAGTATTAATGAGGATCATCTATGGCACTTGATGGGCTTCGACAC
CATGTTTTGGTTGTTGGCGTGCGTGTGTACCCTGTCCTATGGCGCCATCA
TGCCATTTAACAACATGGCTCAGGTGTACTTGCTGAAGAACTACCTGCCC
ATCCACGAGGAGATCCCCAAGGGGGTCGACTGTTCGTTTAGGCCGGTGTT
GCCTGAGTGGGAGGACTACTGCGCGGAGGTGAATAAGGTACGGAGGACGG
CCGGATCGCTCCAGAGTGTCCCTTTCATGGTGGCGGGGATTTTGACTCCG
CTGGTGGGCATTTTGATTGATCGGTGCGGTCATCGGACGTTGTATATTTT
ACTGGGGCCTCTTTTGTTGTTGGCGACGCACTTTGTATTCTTGGTGGGGG
GTACATCGCCGTTGGTGCCCTTGGTAGGGCTGGGGTTGGCGTATTCGATC
GTTGCGGCTGTAGTGTGGCCCAGTGTGCCGTTGACAGTGCATGCGAGTGA
GAGTTCGAAGAGGTGCGGGACGGCTTTTGGAATTCTGACAGTATTTCAGA
ACCTGTCCATGGCTTTGTTTCCCATGGCGATTGCGGCGTTGTTGCAGTTG
ACGAATGGGTATGTGACAACGGAGTACTTTTTTATTGTCGTGTCCGTGGC
GGGTATTGTGGCGGCGGTGTGTTTAATGGTAGAGGACGAGAAGCACGGGG
CGGTGCTCAGAAAGTATGTTGTGGATGGAGAGGAGACGAACCCCTACCAT
CCCGTCCATCCTTTCCATCATGGTCATGGCCCGCATTTTCGCGCGTGGGG
CACCGGGCGGACCCATGAGGAAGGAGAGGAAGGGAGAGACGGGGAGGGGG
AGCGACGGCCGTTGACAGGGTTTGGCGTTCGTGATGCGGGAAGCCGTAAG
GAGTACAGCGCCATCAGCGTTTAATGGATATCAAATGAGGAATACTATTT
AGCATTTCAATGAGTGTGTTTATTTGACAGCATGAAAGAAAATATTTAGA
TCGAAAAGAAAAAGAACCAAAGGAAATGAAAGTAGAGAAC back to topprotein sequence of NO06G03590.2 >NO06G03590.2-protein ID=NO06G03590.2-protein|Name=NO06G03590.2|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MRSYACRLASTGSYYVYDTPSSLYAQIQEHFLFYNKDATAQASTFELYFN
LLYSVYSIPNILLPFLGGHLVDTVGMRACIVVFSLLVLTGQVITALGVTI
QSMTIMLVGRLIFGLGGECLVVGQSAFISAWFHSREVAFALGFTLSVSRL
GSVLNDWGSPYIAQKIGVVAAFWFGALLCLGSTCTAFLLACVDKSHRSRG
VLDDLEDTQISLATARTDTPAGAGTGRSSYSSSSPLPSAEEQMHLAAPWA
AKGSYFETPHPSFYGPPPALRPAGASGGGAGGGGGGEGPATMNTLVHGSQ
VHHEALQAKLDRLAQLDAVVDSINEDHLWHLMGFDTMFWLLACVCTLSYG
AIMPFNNMAQVYLLKNYLPIHEEIPKGVDCSFRPVLPEWEDYCAEVNKVR
RTAGSLQSVPFMVAGILTPLVGILIDRCGHRTLYILLGPLLLLATHFVFL
VGGTSPLVPLVGLGLAYSIVAAVVWPSVPLTVHASESSKRCGTAFGILTV
FQNLSMALFPMAIAALLQLTNGYVTTEYFFIVVSVAGIVAAVCLMVEDEK
HGAVLRKYVVDGEETNPYHPVHPFHHGHGPHFRAWGTGRTHEEGEEGRDG
EGERRPLTGFGVRDAGSRKEYSAISV* back to topmRNA from alignment at chr6:985125..988008+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03590.2 ID=NO06G03590.2|Name=NO06G03590.2|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp|location=Sequence derived from alignment at chr6:985125..988008+ (Nannochloropsis oceanica)
CAACTACGAAGGAATGTGCCCTGTGTCAAGTAAGTGTACGGATGGAAAGA
CAGACGTGAGACCATGGCGATATCCCCTCTCCCAAAATGCATCTCCTCGT
GTTACAGGGAGGGAGATGGGCAAATGTCGCGGCCCTGACCCTTCGGGACC
TTCAGGCCCCTCGAAACTCGCACCCAAACATGTAATACATCTGAAAACTT
TGACCGTCATGGACGGGGAGAGCGTAATGCGGGCTGGAGCGGGTATATTC
AGTCATGAACATTGTCTCGACATGCGCACATCCCATCAGCATGGCTGAAA
CGGCGGCGGCAAGCGCAAACAACAACTTTCAAGTAGACGAACCCGCACGA
CTTCTGAACCACTCAAATTTATCACAACCAAAGGGCGCGCCTTCTTGTCC
TCCTCCTCCTTCACCATCCTCTCCTGCCGGTGGCGCTGCCGGTGGTAACC
GCGTAGAGCGGCGGCCGACCTGTGGATAGCCTCCCCTCCACCTCCGTCCT
TTGCATCTGCGTGCCATGATGGACATGCACACGGACCAGATCCTGACCAG
CAGAACGCCTCCGCCGATCAATGAGGTACGCCGAGAGCCCACGTTCTATC
TGCGGGCGCTCGTACTTTTGATGGCGTCCTGCCTTACAATCGGTAAGTCC
TCTTGACTTTTCTTGCCTGCCTATGAAGCGCCCTTCGATTGTACGGATGT
CACATTTATGGTGTGCAGCAGGTTTTACTTGCCACCAAAAGTAAAGAATT
TCACATTTACACGATACTCACACATCTTCATTCACTCAACCATATGCGCT
CCTACGCTTGCCGGCTTGCTTCCACAGGAAGCTATTACGTCTATGGTAAG
TGCCCGACCACTCTTCACCTCCTTTCACTCATCCTCCCTCACTCACTCTT
CCTCCCTCCCTCCCTCCCTCCTCCTTTCTCTGAACCAAGATACTCCCTCC
TCCCTGTACGCCCAAATTCAAGAGCATTTCCTTTTTTACAACAAAGACGC
CACCGCCCAAGCCTCCACCTTCGAGCTCTACTTCAACCTCCTCTATTCCG
TTTACAGCATCCCGAACATTCTCCTCCCCTTCCTCGGTGGGCATCTAGTC
GATACCGTAGGCATGCGGGCGTGCATTGTCGTGTTTTCGCTCTTGGTCTT
AACGGGGCAGGTAATCACGGCTTTAGGGGTTACGATTCAGTCGATGACAA
TCATGTTGGTAGGCCGACTCATCTTTGGCCTAGGAGGAGAGTGCCTGGTG
GTAGGACAAAGCGCGTTTATTTCCGCGTGGTTTCATTCAAGAGAGGTTGC
ATTTGCACTGGGCTTCACTTTGTCGGTTTCCAGGTTGGGGAGTGTATTGA
ACGACTGGGGAAGTCCGTATATCGCGCAGAAGATAGGGGTTGTGGCGGCG
TTCTGGTTCGGCGCCTTATTGTGTCTGGGCTCGACGTGCACTGCCTTCTT
ACTGGCGTGTGTTGATAAGAGCCATCGGTCGCGTGGCGTGCTCGACGACC
TGGAGGACACCCAGATCTCACTCGCCACTGCCCGTACTGATACTCCTGCT
GGTGCCGGCACAGGGAGATCGTCCTATTCCTCCTCCTCCCCCTTGCCTTC
CGCGGAAGAACAAATGCATTTGGCCGCCCCCTGGGCAGCGAAAGGTTCAT
ACTTCGAGACCCCCCACCCCTCTTTTTATGGCCCGCCTCCTGCCCTTCGT
CCTGCTGGTGCTAGTGGAGGAGGAGCAGGAGGAGGAGGGGGGGGAGAAGG
GCCGGCGACGATGAACACATTGGTGCATGGGAGCCAGGTGCATCATGAGG
CGTTACAGGCCAAATTGGATAGGTTAGCGCAGTTGGACGCAGTGGTGGAC
AGTATTAATGAGGATCATCTATGGCACTTGATGGGCTTCGACACCATGTT
TTGGTTGTTGGCGTGCGTGTGTACCCTGTCCTATGGCGCCATCATGCCAT
TTAACAACATGGCTCAGGTGTACTTGCTGAAGAACTACCTGCCCATCCAC
GAGGAGATCCCCAAGGGGGTCGACTGTTCGTTTAGGCCGGTGTTGCCTGA
GTGGGAGGACTACTGCGCGGAGGTGAATAAGGTACGGAGGACGGCCGGAT
CGCTCCAGAGTGTCCCTTTCATGGTGGCGGGGATTTTGACTCCGCTGGTG
GGCATTTTGATTGATCGGTGCGGTCATCGGACGTTGTATATTTTACTGGG
GCCTCTTTTGTTGTTGGCGACGCACTTTGTATTCTTGGTGGGGGGTACAT
CGCCGTTGGTGCCCTTGGTAGGGCTGGGGTTGGCGTATTCGATCGTTGCG
GCTGTAGTGTGGCCCAGTGTGCCGTTGACAGTGCATGCGAGTGAGAGTTC
GAAGAGGTGCGGGACGGCTTTTGGAATTCTGACAGTATTTCAGAACCTGT
CCATGGCTTTGTTTCCCATGGCGATTGCGGCGTTGTTGCAGTTGACGAAT
GGGTATGTGACAACGGAGTACTTTTTTATTGTCGTGTCCGTGGCGGGTAT
TGTGGCGGCGGTGTGTTTAATGGTAGAGGACGAGAAGCACGGGGCGGTGC
TCAGAAAGTATGTTGTGGATGGAGAGGAGACGAACCCCTACCATCCCGTC
CATCCTTTCCATCATGGTCATGGCCCGCATTTTCGCGCGTGGGGCACCGG
GCGGACCCATGAGGAAGGAGAGGAAGGGAGAGACGGGGAGGGGGAGCGAC
GGCCGTTGACAGGGTTTGGCGTTCGTGATGCGGGAAGCCGTAAGGAGTAC
AGCGCCATCAGCGTTTAATGGATATCAAATGAGGAATACTATTTAGCATT
TCAATGAGTGTGTTTATTTGACAGCATGAAAGAAAATATTTAGATCGAAA
AGAAAAAGAACCAAAGGAAATGAAAGTAGAGAAC back to topCoding sequence (CDS) from alignment at chr6:985125..988008+ >NO06G03590.2 ID=NO06G03590.2|Name=NO06G03590.2|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr6:985125..988008+ (Nannochloropsis oceanica)
ATGCGCTCCTACGCTTGCCGGCTTGCTTCCACAGGAAGCTATTACGTCTA
TGATACTCCCTCCTCCCTGTACGCCCAAATTCAAGAGCATTTCCTTTTTT
ACAACAAAGACGCCACCGCCCAAGCCTCCACCTTCGAGCTCTACTTCAAC
CTCCTCTATTCCGTTTACAGCATCCCGAACATTCTCCTCCCCTTCCTCGG
TGGGCATCTAGTCGATACCGTAGGCATGCGGGCGTGCATTGTCGTGTTTT
CGCTCTTGGTCTTAACGGGGCAGGTAATCACGGCTTTAGGGGTTACGATT
CAGTCGATGACAATCATGTTGGTAGGCCGACTCATCTTTGGCCTAGGAGG
AGAGTGCCTGGTGGTAGGACAAAGCGCGTTTATTTCCGCGTGGTTTCATT
CAAGAGAGGTTGCATTTGCACTGGGCTTCACTTTGTCGGTTTCCAGGTTG
GGGAGTGTATTGAACGACTGGGGAAGTCCGTATATCGCGCAGAAGATAGG
GGTTGTGGCGGCGTTCTGGTTCGGCGCCTTATTGTGTCTGGGCTCGACGT
GCACTGCCTTCTTACTGGCGTGTGTTGATAAGAGCCATCGGTCGCGTGGC
GTGCTCGACGACCTGGAGGACACCCAGATCTCACTCGCCACTGCCCGTAC
TGATACTCCTGCTGGTGCCGGCACAGGGAGATCGTCCTATTCCTCCTCCT
CCCCCTTGCCTTCCGCGGAAGAACAAATGCATTTGGCCGCCCCCTGGGCA
GCGAAAGGTTCATACTTCGAGACCCCCCACCCCTCTTTTTATGGCCCGCC
TCCTGCCCTTCGTCCTGCTGGTGCTAGTGGAGGAGGAGCAGGAGGAGGAG
GGGGGGGAGAAGGGCCGGCGACGATGAACACATTGGTGCATGGGAGCCAG
GTGCATCATGAGGCGTTACAGGCCAAATTGGATAGGTTAGCGCAGTTGGA
CGCAGTGGTGGACAGTATTAATGAGGATCATCTATGGCACTTGATGGGCT
TCGACACCATGTTTTGGTTGTTGGCGTGCGTGTGTACCCTGTCCTATGGC
GCCATCATGCCATTTAACAACATGGCTCAGGTGTACTTGCTGAAGAACTA
CCTGCCCATCCACGAGGAGATCCCCAAGGGGGTCGACTGTTCGTTTAGGC
CGGTGTTGCCTGAGTGGGAGGACTACTGCGCGGAGGTGAATAAGGTACGG
AGGACGGCCGGATCGCTCCAGAGTGTCCCTTTCATGGTGGCGGGGATTTT
GACTCCGCTGGTGGGCATTTTGATTGATCGGTGCGGTCATCGGACGTTGT
ATATTTTACTGGGGCCTCTTTTGTTGTTGGCGACGCACTTTGTATTCTTG
GTGGGGGGTACATCGCCGTTGGTGCCCTTGGTAGGGCTGGGGTTGGCGTA
TTCGATCGTTGCGGCTGTAGTGTGGCCCAGTGTGCCGTTGACAGTGCATG
CGAGTGAGAGTTCGAAGAGGTGCGGGACGGCTTTTGGAATTCTGACAGTA
TTTCAGAACCTGTCCATGGCTTTGTTTCCCATGGCGATTGCGGCGTTGTT
GCAGTTGACGAATGGGTATGTGACAACGGAGTACTTTTTTATTGTCGTGT
CCGTGGCGGGTATTGTGGCGGCGGTGTGTTTAATGGTAGAGGACGAGAAG
CACGGGGCGGTGCTCAGAAAGTATGTTGTGGATGGAGAGGAGACGAACCC
CTACCATCCCGTCCATCCTTTCCATCATGGTCATGGCCCGCATTTTCGCG
CGTGGGGCACCGGGCGGACCCATGAGGAAGGAGAGGAAGGGAGAGACGGG
GAGGGGGAGCGACGGCCGTTGACAGGGTTTGGCGTTCGTGATGCGGGAAG
CCGTAAGGAGTACAGCGCCATCAGCGTTTAA back to top
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