NO06G03570.1, NO06G03570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03570.1
Unique NameNO06G03570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1014
Alignment locationchr6:981190..982203 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:981190..982203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03570.1 vs.
Match: EWM26345.1 (kdpg and khg aldolase [Nannochloropsis gaditana])

HSP 1 Score: 300.4 bits (768), Expect = 6.800e-78
Identity = 195/349 (55.87%), Postives = 223/349 (63.90%), Query Frame = 0 
Query:    1 MRALAGSRSAAWP-----LLLLLGNGGNAWTLTSSFLLQQSSCGTPPSPMSPACRLVERQTHLIKAAARPFVDNDVAWLSRQEPVSSTQQHHDPHHTTIDTIPSTSMSPKEAHALVCLDACPLVAVLRGVAAVDLPKVVMTLRQEGLTMISIPAESPAGLEGLRALTSSSSSLSSTSS------------PEQKLLPFALGAATVISPDQVDLAAAAGASFISCPHTDPVILARAKAHGLLVLPGILTPSEAFLALNHGAHVLKLFPSQAAPPGMVASIAAVLPPPARLLVSGGVQAVDMPAYIAGGATGFALGSTLFKPGLKEGELAERARVFVTAL-RVGQTEKEKE 332
            M A  G R   W       LL     G+AW    S LLQ+     P    +    L       IKAA +PF D+D AW       S+TQ       +   T+P  + + +EAHAL CLDACPLVAVLRGV   D+ + + TLRQ GLTM+S+PAESPAG EGL+AL S  SS  + SS             ++ L P ALGAATV+S  QVDLAAAAGASFISCPHTDP I+ RA  HG+L LPGILTP+EAFLAL HGA VLKLFPSQA PPGMVASIAA+LPPP RLLVSGGV+A DMPAY A GA GFALGSTLF+ GLK GELA RAR F+ AL R    E E E
Sbjct:    1 MWATVGGRDTMWLSRYVLFLLWSTTAGDAWGPPRSPLLQRRE-RMPSGLYTSHTGLAYCSQPSIKAA-KPF-DDDPAWFPSPSSFSATQH---AGFSPPSTLPGPATTTREAHALACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALERAPDGEMEGE 343
The following BLAST results are available for this feature:
BLAST of NO06G03570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26345.16.800e-7855.87kdpg and khg aldolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03570NO06G03570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03570.1NO06G03570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03570.1.cds1NO06G03570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03570.1 ID=NO06G03570.1|Name=NO06G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
ATGCGCGCCCTGGCTGGGTCTCGCTCAGCTGCCTGGCCACTCCTACTACT
GCTTGGAAATGGTGGTAATGCTTGGACATTGACTTCATCGTTTCTTCTTC
AACAAAGCAGCTGCGGAACACCACCCTCCCCCATGTCCCCTGCCTGCCGC
CTTGTCGAAAGACAAACCCACCTAATAAAGGCCGCGGCCAGACCCTTCGT
CGACAACGATGTGGCATGGCTTTCCCGGCAAGAACCGGTCTCGTCCACTC
AACAGCATCACGATCCCCACCACACCACCATTGATACCATCCCCAGCACC
TCAATGAGTCCTAAAGAAGCCCACGCCTTGGTATGCCTTGACGCCTGTCC
GCTCGTTGCCGTCTTGCGTGGTGTAGCTGCGGTGGACCTGCCAAAGGTGG
TAATGACCTTGCGGCAAGAAGGGCTGACCATGATCAGCATACCTGCCGAG
TCCCCTGCCGGCTTGGAAGGCCTCCGGGCTCTTACCTCTTCTTCCTCCTC
CCTCTCCTCCACCTCCTCCCCCGAGCAGAAGCTTCTCCCCTTTGCCCTTG
GCGCCGCCACAGTCATCTCTCCCGACCAAGTCGACCTCGCCGCCGCCGCT
GGTGCTTCATTTATCAGCTGTCCCCACACCGACCCAGTCATTCTGGCGCG
TGCCAAGGCCCATGGCCTCCTTGTCCTGCCCGGGATCCTCACCCCCAGCG
AAGCATTCCTTGCGCTTAACCACGGTGCGCACGTCCTCAAACTTTTCCCT
TCTCAAGCAGCGCCGCCTGGAATGGTGGCGTCGATCGCGGCTGTACTACC
TCCTCCTGCCCGTTTGTTGGTATCGGGAGGGGTGCAGGCGGTAGATATGC
CTGCTTACATTGCAGGGGGTGCCACGGGCTTTGCCTTGGGCTCAACGTTG
TTCAAACCTGGATTGAAGGAGGGGGAACTAGCGGAGAGGGCTCGAGTGTT
TGTCACGGCATTGAGAGTAGGGCAGACGGAGAAGGAGAAGGAGAGGAAGA
AAGAGAAACTATAG
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protein sequence of NO06G03570.1

>NO06G03570.1-protein ID=NO06G03570.1-protein|Name=NO06G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MRALAGSRSAAWPLLLLLGNGGNAWTLTSSFLLQQSSCGTPPSPMSPACR
LVERQTHLIKAAARPFVDNDVAWLSRQEPVSSTQQHHDPHHTTIDTIPST
SMSPKEAHALVCLDACPLVAVLRGVAAVDLPKVVMTLRQEGLTMISIPAE
SPAGLEGLRALTSSSSSLSSTSSPEQKLLPFALGAATVISPDQVDLAAAA
GASFISCPHTDPVILARAKAHGLLVLPGILTPSEAFLALNHGAHVLKLFP
SQAAPPGMVASIAAVLPPPARLLVSGGVQAVDMPAYIAGGATGFALGSTL
FKPGLKEGELAERARVFVTALRVGQTEKEKERKKEKL*
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mRNA from alignment at chr6:981190..982203+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03570.1 ID=NO06G03570.1|Name=NO06G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at chr6:981190..982203+ (Nannochloropsis oceanica)
ATGCGCGCCCTGGCTGGGTCTCGCTCAGCTGCCTGGCCACTCCTACTACT
GCTTGGAAATGGTGGTAATGCTTGGACATTGACTTCATCGTTTCTTCTTC
AACAAAGCAGCTGCGGAACACCACCCTCCCCCATGTCCCCTGCCTGCCGC
CTTGTCGAAAGACAAACCCACCTAATAAAGGCCGCGGCCAGACCCTTCGT
CGACAACGATGTGGCATGGCTTTCCCGGCAAGAACCGGTCTCGTCCACTC
AACAGCATCACGATCCCCACCACACCACCATTGATACCATCCCCAGCACC
TCAATGAGTCCTAAAGAAGCCCACGCCTTGGTATGCCTTGACGCCTGTCC
GCTCGTTGCCGTCTTGCGTGGTGTAGCTGCGGTGGACCTGCCAAAGGTGG
TAATGACCTTGCGGCAAGAAGGGCTGACCATGATCAGCATACCTGCCGAG
TCCCCTGCCGGCTTGGAAGGCCTCCGGGCTCTTACCTCTTCTTCCTCCTC
CCTCTCCTCCACCTCCTCCCCCGAGCAGAAGCTTCTCCCCTTTGCCCTTG
GCGCCGCCACAGTCATCTCTCCCGACCAAGTCGACCTCGCCGCCGCCGCT
GGTGCTTCATTTATCAGCTGTCCCCACACCGACCCAGTCATTCTGGCGCG
TGCCAAGGCCCATGGCCTCCTTGTCCTGCCCGGGATCCTCACCCCCAGCG
AAGCATTCCTTGCGCTTAACCACGGTGCGCACGTCCTCAAACTTTTCCCT
TCTCAAGCAGCGCCGCCTGGAATGGTGGCGTCGATCGCGGCTGTACTACC
TCCTCCTGCCCGTTTGTTGGTATCGGGAGGGGTGCAGGCGGTAGATATGC
CTGCTTACATTGCAGGGGGTGCCACGGGCTTTGCCTTGGGCTCAACGTTG
TTCAAACCTGGATTGAAGGAGGGGGAACTAGCGGAGAGGGCTCGAGTGTT
TGTCACGGCATTGAGAGTAGGGCAGACGGAGAAGGAGAAGGAGAGGAAGA
AAGAGAAACTATAG
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Coding sequence (CDS) from alignment at chr6:981190..982203+

>NO06G03570.1 ID=NO06G03570.1|Name=NO06G03570.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr6:981190..982203+ (Nannochloropsis oceanica)
ATGCGCGCCCTGGCTGGGTCTCGCTCAGCTGCCTGGCCACTCCTACTACT
GCTTGGAAATGGTGGTAATGCTTGGACATTGACTTCATCGTTTCTTCTTC
AACAAAGCAGCTGCGGAACACCACCCTCCCCCATGTCCCCTGCCTGCCGC
CTTGTCGAAAGACAAACCCACCTAATAAAGGCCGCGGCCAGACCCTTCGT
CGACAACGATGTGGCATGGCTTTCCCGGCAAGAACCGGTCTCGTCCACTC
AACAGCATCACGATCCCCACCACACCACCATTGATACCATCCCCAGCACC
TCAATGAGTCCTAAAGAAGCCCACGCCTTGGTATGCCTTGACGCCTGTCC
GCTCGTTGCCGTCTTGCGTGGTGTAGCTGCGGTGGACCTGCCAAAGGTGG
TAATGACCTTGCGGCAAGAAGGGCTGACCATGATCAGCATACCTGCCGAG
TCCCCTGCCGGCTTGGAAGGCCTCCGGGCTCTTACCTCTTCTTCCTCCTC
CCTCTCCTCCACCTCCTCCCCCGAGCAGAAGCTTCTCCCCTTTGCCCTTG
GCGCCGCCACAGTCATCTCTCCCGACCAAGTCGACCTCGCCGCCGCCGCT
GGTGCTTCATTTATCAGCTGTCCCCACACCGACCCAGTCATTCTGGCGCG
TGCCAAGGCCCATGGCCTCCTTGTCCTGCCCGGGATCCTCACCCCCAGCG
AAGCATTCCTTGCGCTTAACCACGGTGCGCACGTCCTCAAACTTTTCCCT
TCTCAAGCAGCGCCGCCTGGAATGGTGGCGTCGATCGCGGCTGTACTACC
TCCTCCTGCCCGTTTGTTGGTATCGGGAGGGGTGCAGGCGGTAGATATGC
CTGCTTACATTGCAGGGGGTGCCACGGGCTTTGCCTTGGGCTCAACGTTG
TTCAAACCTGGATTGAAGGAGGGGGAACTAGCGGAGAGGGCTCGAGTGTT
TGTCACGGCATTGAGAGTAGGGCAGACGGAGAAGGAGAAGGAGAGGAAGA
AAGAGAAACTATAG
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Synonyms
Publications