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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:978748..980988 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03560.1 vs.
Match: EWM26347.1 (3-hydroxyacyl-CoA dehydrogenase nad-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 1007.3 bits (2603), Expect = 2.500e-290 Identity = 519/750 (69.20%), Postives = 603/750 (80.40%), Query Frame = 0
Query: 1 MSVSTSILPETCVAVIRFSNPPVNALSKATCRALHHAVAAAKKDARVRAILLIAGEGLPFSGGADIKEFDTSPSRSN-EVGPLSLLIEEMEAATIPVVACIHNYAFGGGLELALACHYRVAMPDARLGLPEVKLGLIPGAGGTQRLPRLVGLEIALKMIVTGNPIPATAAHKSGLVDVLVGDGKGGDAALMQASLAFVC-PKRGAAVPVRRAIDLQVPEFAASSSSSSTSSSTSPPLELCHSLAKKSGIKIDVPTRGGTAQHGCCEAIAAAALLDPQEGLRIETSIFNRLLQSEESKARRHVFFSERMVALNHHVDLAGSTPIM--KHVGVVGGGTMGAGIAVAFLDAGVRVTLVEVQAEALARAHEVVQGIITSRVRRGQMTPGQAAALATSGRFHGTLSIQDLGECDMVVEAVYEDMALKKDIFMRLDSHCSPKTILATNTSTLSIDEIAKCTKREGRVIGMHFFSPAHLMKLVEVVKGAKTLPETIAAVAAVTKPMKKVCVVVGNCDGFVGNRMLFSYQKELQFMVEEGADPYRIDKLLFDFGFPVGPFVMSDIAGLDVALRIKQQRQRRLRQQNGSITRTAAVERETDVADKLCELTGRLGQKNGLGWYKYDPSIGKGRTPLPDPTVQTFLEKYRKTKGMEPRSPPHTDKEILERSLFPLLNEGIKILEEGIATNGGDIDIVWIYGYGFPAWRGGPMYYAEHHVGLPKLLAGLECYARQYPQSPHFKPANLLRELVRKSQGLVARL 747
MSV+ + P+ VA+IRFSNPPVNALSK C L AVA A++DA +RAILL++GEGLPFSGGADIKEFD PSR N EVGPLSLLIEE+E+AT+P VACIH YAFGGGLE+ALACHYRV+MP A LGLPEVKLGLIPGAGGTQRLPRLVG E A++M++TG+P+P+T AH GLVD + GK A L + +L V PK G RRAI+L VP A + PLE C ++AKK+GIK++ RGG A G EA+AAAAL DP+ GL +E +FNRLL+SE+SKARR+VFFSER VA +HH+ L G ++ +HVGVVGGGTMGAGIA+AFLDAG RVTLVEV EALARAHEVVQGI+ SRVRRG M+ QAA A+ RF GTLS+ DL E D+VVEAV+EDMALKKDIF RLD+ C P TILATNTS LSID+IA T+R RV+GMHFFSPAH+M+LVEVV+G + + A+AAV K MKKVCV VGNCDGFVGNRMLFSYQKELQ MVEEGADPYRIDKLLFDFGFPVGPFVMSDIAGLDVA RIKQQRQ+R +Q+ + + ER++DVADKL E +GRLGQKNG GWY+YDP+IGKGRTPLPDP+VQTFLEK+R++K + PR+PPHTDKEILERSLFPLLNEGIKI+EEGIA +G D+DIVWIYGYGFPAWRGGPMYYAEHHVGL LLAGL YA++YP HF+PA LL++LVRK QGLVARL
Sbjct: 1 MSVAAEVFPDKRVAIIRFSNPPVNALSKKLCTRLKEAVANAQQDANIRAILLMSGEGLPFSGGADIKEFDNPPSRDNAEVGPLSLLIEEIESATVPTVACIHKYAFGGGLEVALACHYRVSMPTALLGLPEVKLGLIPGAGGTQRLPRLVGWEAAVRMVLTGDPLPSTEAHGIGLVDAVAKGGKEAGATLQEVALTVVNDPKTGCH---RRAINLPVPSNALN------------PLETCQTIAKKAGIKVEASDRGGEAFQGALEALAAAALPDPRRGLDLEARVFNRLLRSEQSKARRYVFFSERRVASDHHLGLRGDESLVEIRHVGVVGGGTMGAGIAIAFLDAGARVTLVEVTTEALARAHEVVQGIVASRVRRGLMSAAQAAVWASQRRFQGTLSLGDLSETDLVVEAVFEDMALKKDIFRRLDAQCRPSTILATNTSILSIDDIAAVTRRPDRVLGMHFFSPAHMMRLVEVVRGQASSTAVVGALAAVIKRMKKVCVAVGNCDGFVGNRMLFSYQKELQLMVEEGADPYRIDKLLFDFGFPVGPFVMSDIAGLDVARRIKQQRQQRKLKQSSTGRDNLSSERDSDVADKLSESSGRLGQKNGRGWYRYDPAIGKGRTPLPDPSVQTFLEKFRRSKDLTPRNPPHTDKEILERSLFPLLNEGIKIIEEGIAKSGSDVDIVWIYGYGFPAWRGGPMYYAEHHVGLASLLAGLNKYAQKYPCCSHFRPAGLLQDLVRKGQGLVARL 735
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03560.1 ID=NO06G03560.1|Name=NO06G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp
ATGAGCGTCTCCACGTCCATCCTCCCCGAGACATGTGTGGCTGTCATTCG
CTTCAGCAACCCTCCCGTGAACGCCCTCTCTAAAGCTACGTGCAGAGCCC
TCCATCACGCCGTGGCCGCCGCAAAGAAGGACGCCAGGGTCCGGGCCATT
CTTCTGATTGCTGGGGAAGGGCTGCCCTTTTCCGGCGGTGCAGACATCAA
GGAATTCGACACTTCCCCGTCTCGAAGTAATGAAGTTGGACCGCTCAGTC
TGCTGATTGAGGAGATGGAGGCCGCAACCATCCCCGTGGTCGCCTGCATC
CATAATTACGCCTTCGGCGGAGGGCTAGAGCTCGCCCTCGCTTGCCATTA
CCGCGTCGCCATGCCCGATGCCCGTCTGGGCCTTCCAGAGGTCAAACTTG
GCTTGATTCCAGGAGCAGGAGGGACGCAGCGACTGCCGCGGCTGGTGGGA
TTGGAAATAGCGTTGAAGATGATTGTGACAGGGAACCCTATTCCGGCCAC
CGCCGCGCACAAGTCAGGCTTAGTAGACGTGCTTGTGGGGGACGGGAAGG
GAGGAGATGCCGCGTTAATGCAAGCGTCATTAGCATTCGTCTGTCCGAAA
AGAGGGGCAGCGGTGCCTGTACGTCGTGCGATTGACTTGCAAGTACCCGA
GTTTGCTGCAAGCTCGTCCTCCTCTTCTACTTCCTCCTCGACATCCCCCC
CCTTGGAACTCTGTCATAGTCTGGCCAAGAAATCAGGAATCAAGATAGAC
GTGCCTACTCGTGGTGGAACGGCACAGCATGGGTGCTGTGAGGCTATAGC
AGCGGCCGCTTTGCTTGACCCTCAGGAAGGCCTGCGGATAGAAACGAGCA
TCTTCAATCGCTTACTACAAAGCGAGGAGTCCAAAGCCCGCCGTCACGTC
TTTTTCAGTGAGCGGATGGTGGCATTGAATCATCACGTGGATCTAGCTGG
GAGTACACCTATAATGAAACATGTCGGGGTGGTTGGTGGGGGCACCATGG
GGGCAGGCATTGCGGTTGCCTTCCTTGATGCCGGCGTGCGGGTTACGCTA
GTCGAGGTGCAAGCCGAGGCCTTGGCAAGAGCACATGAGGTGGTCCAGGG
GATAATAACCTCCCGTGTTCGTCGAGGCCAAATGACACCAGGGCAGGCGG
CGGCATTGGCGACTAGTGGGCGATTCCACGGGACCTTGTCCATACAGGAT
TTAGGGGAGTGTGACATGGTGGTGGAGGCTGTGTATGAGGACATGGCGTT
GAAAAAAGATATTTTCATGAGGTTGGATTCTCATTGTTCGCCGAAAACGA
TATTGGCGACAAACACGAGTACATTGTCGATTGACGAGATCGCAAAGTGC
ACGAAGAGAGAGGGGCGGGTGATAGGCATGCATTTCTTTTCCCCGGCGCA
TCTTATGAAGTTGGTGGAGGTGGTGAAGGGGGCCAAGACGTTACCTGAGA
CGATAGCGGCGGTAGCGGCGGTGACCAAGCCGATGAAGAAGGTGTGTGTA
GTTGTAGGGAATTGTGACGGATTTGTGGGGAATCGAATGTTGTTTAGTTA
TCAAAAGGAGTTACAGTTTATGGTGGAAGAGGGCGCTGACCCCTACCGCA
TCGACAAACTGCTCTTTGACTTCGGCTTTCCCGTCGGACCCTTCGTCATG
TCTGATATTGCCGGCCTAGACGTCGCCTTACGGATCAAGCAACAACGCCA
ACGTCGACTCCGGCAGCAAAACGGTAGCATCACGCGAACAGCAGCAGTAG
AACGAGAAACAGACGTGGCCGACAAGCTCTGCGAGCTCACCGGGAGGCTG
GGACAAAAGAATGGTCTTGGCTGGTATAAATACGATCCTTCCATCGGTAA
AGGCCGCACGCCTCTCCCTGATCCCACCGTGCAGACGTTCCTTGAAAAGT
ACCGCAAGACCAAGGGGATGGAACCCCGCAGCCCTCCACATACGGACAAG
GAGATTCTGGAGCGCAGTTTGTTCCCTCTCCTGAACGAAGGGATAAAAAT
TCTCGAGGAGGGAATCGCGACAAATGGTGGGGATATTGACATTGTCTGGA
TTTATGGTTATGGTTTCCCGGCATGGCGGGGAGGGCCGATGTACTATGCG
GAGCATCACGTGGGTTTACCCAAGCTCTTGGCAGGGTTGGAGTGCTATGC
AAGGCAGTATCCACAGAGCCCACATTTCAAACCCGCCAATTTGTTGCGGG
AGCTGGTGCGCAAGAGCCAGGGTTTGGTGGCGCGGTTGTAG back to topprotein sequence of NO06G03560.1 >NO06G03560.1-protein ID=NO06G03560.1-protein|Name=NO06G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=747bp
MSVSTSILPETCVAVIRFSNPPVNALSKATCRALHHAVAAAKKDARVRAI
LLIAGEGLPFSGGADIKEFDTSPSRSNEVGPLSLLIEEMEAATIPVVACI
HNYAFGGGLELALACHYRVAMPDARLGLPEVKLGLIPGAGGTQRLPRLVG
LEIALKMIVTGNPIPATAAHKSGLVDVLVGDGKGGDAALMQASLAFVCPK
RGAAVPVRRAIDLQVPEFAASSSSSSTSSSTSPPLELCHSLAKKSGIKID
VPTRGGTAQHGCCEAIAAAALLDPQEGLRIETSIFNRLLQSEESKARRHV
FFSERMVALNHHVDLAGSTPIMKHVGVVGGGTMGAGIAVAFLDAGVRVTL
VEVQAEALARAHEVVQGIITSRVRRGQMTPGQAAALATSGRFHGTLSIQD
LGECDMVVEAVYEDMALKKDIFMRLDSHCSPKTILATNTSTLSIDEIAKC
TKREGRVIGMHFFSPAHLMKLVEVVKGAKTLPETIAAVAAVTKPMKKVCV
VVGNCDGFVGNRMLFSYQKELQFMVEEGADPYRIDKLLFDFGFPVGPFVM
SDIAGLDVALRIKQQRQRRLRQQNGSITRTAAVERETDVADKLCELTGRL
GQKNGLGWYKYDPSIGKGRTPLPDPTVQTFLEKYRKTKGMEPRSPPHTDK
EILERSLFPLLNEGIKILEEGIATNGGDIDIVWIYGYGFPAWRGGPMYYA
EHHVGLPKLLAGLECYARQYPQSPHFKPANLLRELVRKSQGLVARL* back to topmRNA from alignment at chr6:978748..980988+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03560.1 ID=NO06G03560.1|Name=NO06G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr6:978748..980988+ (Nannochloropsis oceanica)
ATGAGCGTCTCCACGTCCATCCTCCCCGAGACATGTGTGGCTGTCATTCG
CTTCAGCAACCCTCCCGTGAACGCCCTCTCTAAAGCTACGTGCAGAGCCC
TCCATCACGCCGTGGCCGCCGCAAAGAAGGACGCCAGGGTCCGGGCCATT
CTTCTGATTGCTGGGGAAGGGCTGCCCTTTTCCGGCGGTGCAGACATCAA
GGAATTCGACACTTCCCCGTCTCGAAGTAATGAAGTTGGACCGCTCAGTC
TGCTGATTGAGGAGATGGAGGCCGCAACCATCCCCGTGGTCGCCTGCATC
CATAATTACGCCTTCGGCGGAGGGCTAGAGCTCGCCCTCGCTTGCCATTA
CCGCGTCGCCATGCCCGATGCCCGTCTGGGCCTTCCAGAGGTCAAACTTG
GCTTGATTCCAGGAGCAGGAGGGACGCAGCGACTGCCGCGGCTGGTGGGA
TTGGAAATAGCGTTGAAGATGATTGTGACAGGGAACCCTATTCCGGCCAC
CGCCGCGCACAAGTCAGGCTTAGTAGACGTGCTTGTGGGGGACGGGAAGG
GAGGAGATGCCGCGTTAATGCAAGCGTCATTAGCATTCGTCTGTCCGAAA
AGAGGGGCAGCGGTGCCTGTACGTCGTGCGATTGACTTGCAAGTACCCGA
GTTTGCTGCAAGCTCGTCCTCCTCTTCTACTTCCTCCTCGACATCCCCCC
CCTTGGAACTCTGTCATAGTCTGGCCAAGAAATCAGGAATCAAGATAGAC
GTGCCTACTCGTGGTGGAACGGCACAGCATGGGTGCTGTGAGGCTATAGC
AGCGGCCGCTTTGCTTGACCCTCAGGAAGGCCTGCGGATAGAAACGAGCA
TCTTCAATCGCTTACTACAAAGCGAGGAGTCCAAAGCCCGCCGTCACGTC
TTTTTCAGTGAGCGGATGGTGGCATTGAATCATCACGTGGATCTAGCTGG
GAGTACACCTATAATGAAACATGTCGGGGTGGTTGGTGGGGGCACCATGG
GGGCAGGCATTGCGGTTGCCTTCCTTGATGCCGGCGTGCGGGTTACGCTA
GTCGAGGTGCAAGCCGAGGCCTTGGCAAGAGCACATGAGGTGGTCCAGGG
GATAATAACCTCCCGTGTTCGTCGAGGCCAAATGACACCAGGGCAGGCGG
CGGCATTGGCGACTAGTGGGCGATTCCACGGGACCTTGTCCATACAGGAT
TTAGGGGAGTGTGACATGGTGGTGGAGGCTGTGTATGAGGACATGGCGTT
GAAAAAAGATATTTTCATGAGGTTGGATTCTCATTGTTCGCCGAAAACGA
TATTGGCGACAAACACGAGTACATTGTCGATTGACGAGATCGCAAAGTGC
ACGAAGAGAGAGGGGCGGGTGATAGGCATGCATTTCTTTTCCCCGGCGCA
TCTTATGAAGTTGGTGGAGGTGGTGAAGGGGGCCAAGACGTTACCTGAGA
CGATAGCGGCGGTAGCGGCGGTGACCAAGCCGATGAAGAAGGTGTGTGTA
GTTGTAGGGAATTGTGACGGATTTGTGGGGAATCGAATGTTGTTTAGTTA
TCAAAAGGAGTTACAGTTTATGGTGGAAGAGGGCGCTGACCCCTACCGCA
TCGACAAACTGCTCTTTGACTTCGGCTTTCCCGTCGGACCCTTCGTCATG
TCTGATATTGCCGGCCTAGACGTCGCCTTACGGATCAAGCAACAACGCCA
ACGTCGACTCCGGCAGCAAAACGGTAGCATCACGCGAACAGCAGCAGTAG
AACGAGAAACAGACGTGGCCGACAAGCTCTGCGAGCTCACCGGGAGGCTG
GGACAAAAGAATGGTCTTGGCTGGTATAAATACGATCCTTCCATCGGTAA
AGGCCGCACGCCTCTCCCTGATCCCACCGTGCAGACGTTCCTTGAAAAGT
ACCGCAAGACCAAGGGGATGGAACCCCGCAGCCCTCCACATACGGACAAG
GAGATTCTGGAGCGCAGTTTGTTCCCTCTCCTGAACGAAGGGATAAAAAT
TCTCGAGGAGGGAATCGCGACAAATGGTGGGGATATTGACATTGTCTGGA
TTTATGGTTATGGTTTCCCGGCATGGCGGGGAGGGCCGATGTACTATGCG
GAGCATCACGTGGGTTTACCCAAGCTCTTGGCAGGGTTGGAGTGCTATGC
AAGGCAGTATCCACAGAGCCCACATTTCAAACCCGCCAATTTGTTGCGGG
AGCTGGTGCGCAAGAGCCAGGGTTTGGTGGCGCGGTTGTAG back to topCoding sequence (CDS) from alignment at chr6:978748..980988+ >NO06G03560.1 ID=NO06G03560.1|Name=NO06G03560.1|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at chr6:978748..980988+ (Nannochloropsis oceanica)
ATGAGCGTCTCCACGTCCATCCTCCCCGAGACATGTGTGGCTGTCATTCG
CTTCAGCAACCCTCCCGTGAACGCCCTCTCTAAAGCTACGTGCAGAGCCC
TCCATCACGCCGTGGCCGCCGCAAAGAAGGACGCCAGGGTCCGGGCCATT
CTTCTGATTGCTGGGGAAGGGCTGCCCTTTTCCGGCGGTGCAGACATCAA
GGAATTCGACACTTCCCCGTCTCGAAGTAATGAAGTTGGACCGCTCAGTC
TGCTGATTGAGGAGATGGAGGCCGCAACCATCCCCGTGGTCGCCTGCATC
CATAATTACGCCTTCGGCGGAGGGCTAGAGCTCGCCCTCGCTTGCCATTA
CCGCGTCGCCATGCCCGATGCCCGTCTGGGCCTTCCAGAGGTCAAACTTG
GCTTGATTCCAGGAGCAGGAGGGACGCAGCGACTGCCGCGGCTGGTGGGA
TTGGAAATAGCGTTGAAGATGATTGTGACAGGGAACCCTATTCCGGCCAC
CGCCGCGCACAAGTCAGGCTTAGTAGACGTGCTTGTGGGGGACGGGAAGG
GAGGAGATGCCGCGTTAATGCAAGCGTCATTAGCATTCGTCTGTCCGAAA
AGAGGGGCAGCGGTGCCTGTACGTCGTGCGATTGACTTGCAAGTACCCGA
GTTTGCTGCAAGCTCGTCCTCCTCTTCTACTTCCTCCTCGACATCCCCCC
CCTTGGAACTCTGTCATAGTCTGGCCAAGAAATCAGGAATCAAGATAGAC
GTGCCTACTCGTGGTGGAACGGCACAGCATGGGTGCTGTGAGGCTATAGC
AGCGGCCGCTTTGCTTGACCCTCAGGAAGGCCTGCGGATAGAAACGAGCA
TCTTCAATCGCTTACTACAAAGCGAGGAGTCCAAAGCCCGCCGTCACGTC
TTTTTCAGTGAGCGGATGGTGGCATTGAATCATCACGTGGATCTAGCTGG
GAGTACACCTATAATGAAACATGTCGGGGTGGTTGGTGGGGGCACCATGG
GGGCAGGCATTGCGGTTGCCTTCCTTGATGCCGGCGTGCGGGTTACGCTA
GTCGAGGTGCAAGCCGAGGCCTTGGCAAGAGCACATGAGGTGGTCCAGGG
GATAATAACCTCCCGTGTTCGTCGAGGCCAAATGACACCAGGGCAGGCGG
CGGCATTGGCGACTAGTGGGCGATTCCACGGGACCTTGTCCATACAGGAT
TTAGGGGAGTGTGACATGGTGGTGGAGGCTGTGTATGAGGACATGGCGTT
GAAAAAAGATATTTTCATGAGGTTGGATTCTCATTGTTCGCCGAAAACGA
TATTGGCGACAAACACGAGTACATTGTCGATTGACGAGATCGCAAAGTGC
ACGAAGAGAGAGGGGCGGGTGATAGGCATGCATTTCTTTTCCCCGGCGCA
TCTTATGAAGTTGGTGGAGGTGGTGAAGGGGGCCAAGACGTTACCTGAGA
CGATAGCGGCGGTAGCGGCGGTGACCAAGCCGATGAAGAAGGTGTGTGTA
GTTGTAGGGAATTGTGACGGATTTGTGGGGAATCGAATGTTGTTTAGTTA
TCAAAAGGAGTTACAGTTTATGGTGGAAGAGGGCGCTGACCCCTACCGCA
TCGACAAACTGCTCTTTGACTTCGGCTTTCCCGTCGGACCCTTCGTCATG
TCTGATATTGCCGGCCTAGACGTCGCCTTACGGATCAAGCAACAACGCCA
ACGTCGACTCCGGCAGCAAAACGGTAGCATCACGCGAACAGCAGCAGTAG
AACGAGAAACAGACGTGGCCGACAAGCTCTGCGAGCTCACCGGGAGGCTG
GGACAAAAGAATGGTCTTGGCTGGTATAAATACGATCCTTCCATCGGTAA
AGGCCGCACGCCTCTCCCTGATCCCACCGTGCAGACGTTCCTTGAAAAGT
ACCGCAAGACCAAGGGGATGGAACCCCGCAGCCCTCCACATACGGACAAG
GAGATTCTGGAGCGCAGTTTGTTCCCTCTCCTGAACGAAGGGATAAAAAT
TCTCGAGGAGGGAATCGCGACAAATGGTGGGGATATTGACATTGTCTGGA
TTTATGGTTATGGTTTCCCGGCATGGCGGGGAGGGCCGATGTACTATGCG
GAGCATCACGTGGGTTTACCCAAGCTCTTGGCAGGGTTGGAGTGCTATGC
AAGGCAGTATCCACAGAGCCCACATTTCAAACCCGCCAATTTGTTGCGGG
AGCTGGTGCGCAAGAGCCAGGGTTTGGTGGCGCGGTTGTAG back to top
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