NO06G03550.1, NO06G03550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03550.1
Unique NameNO06G03550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr6:977021..978307 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:977021..978307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03550.1 vs.
Match: EWM26343.1 (mitochondrial carrier [Nannochloropsis gaditana])

HSP 1 Score: 493.0 bits (1268), Expect = 8.000e-136
Identity = 269/382 (70.42%), Postives = 303/382 (79.32%), Query Frame = 0 
Query:    3 GGEEVAAAGSSNQFLESMLASATAGVISRILCHPLDTCKARLQNPGSEFSGTLQVVRQTLRHEGIGGLYRGLGTVISIGTPAFVLYLTTYEQAKKAFLGMPALQDNYEFVGHFGAGMAAETVSCLIYVPVDVVKERLQVQRRLRSGQEISGTLPMYRGTWHALSTIMQTEGLRGVYRGYGATLLSFGPFSAFYFLFYEKFKQWSATSVGLATQEDLPFHLTLASAAGAGSLASFITNPVDLVRLRLQVQRGSS--------SSSPSSSSSSPSSTPSASPPTVPATSKLANNSSIHGHHSHPMPSILPPLGGGGGKITAAAAKVVVEQYHNTLDGLTKVYRREGFHGLFKGSGARIAFYTPSTMISMSVYDTLKREFHHLLS 377
            GGEEV  + S  QFLESMLASATAGVISRILCHPLDTCKARLQNPGSEF+ TLQV RQTL+ EG+GGLYRGLGTV+SIGTPAF+LYL TYE AKK  L +PALQ +Y+FVGHF AGMAAET SCLIYVPVDVVKERLQVQRRL +G+EI G+LPMYRGTWHALSTI + EGLRGVYRGYGATLLSFGPFSAFYF+FYE FK W    + L   E LPFH+TLASAA AG+LAS ITNP+DLVRLRLQVQRGSS         SSP+  +S PSST +       + + + + + +HG  + P PS LP +    G+  A  A +V EQYHNTLDGL KVY REGF GLFKGSGARIAF+TPSTMISM+VYDTLK E H+LLS
Sbjct:    5 GGEEVDTS-SYTQFLESMLASATAGVISRILCHPLDTCKARLQNPGSEFTSTLQVFRQTLQQEGLGGLYRGLGTVVSIGTPAFMLYLATYEYAKKLCLSIPALQHDYQFVGHFSAGMAAETASCLIYVPVDVVKERLQVQRRLLNGREIPGSLPMYRGTWHALSTIARQEGLRGVYRGYGATLLSFGPFSAFYFVFYETFKGWGLRHLRLDKAETLPFHMTLASAASAGALASLITNPMDLVRLRLQVQRGSSLPPLTPALHSSPAPFASFPSSTGA-------SWTGVGSPAQVHGAPTAP-PSHLPMV---KGERVADTAAIVREQYHNTLDGLIKVYNREGFRGLFKGSGARIAFFTPSTMISMTVYDTLKGEIHNLLS 374
The following BLAST results are available for this feature:
BLAST of NO06G03550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26343.18.000e-13670.42mitochondrial carrier [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03550NO06G03550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03550.1NO06G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03550.1.cds1NO06G03550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03550.1.cds2NO06G03550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03550.1 ID=NO06G03550.1|Name=NO06G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
ATGGAGGGAGGGGAGGAGGTTGCTGCCGCGGGCTCGTCAAACCAGTTCCT
CGAGTCCATGCTCGCCAGTGCCACCGCCGGGGTCATCTCCCGGATCCTCT
GCCACCCCCTCGACACATGCAAAGCCCGTCTTCAAAATCCGGGGAGTGAA
TTCTCGGGCACGTTGCAAGTGGTCCGACAGACGCTGCGGCATGAGGGTAT
TGGTGGGTTGTATCGTGGGCTCGGCACCGTCATAAGCATTGGCACCCCGG
CCTTCGTCCTCTACCTCACCACGTACGAACAAGCCAAAAAGGCTTTCCTG
GGCATGCCAGCCCTACAAGACAACTATGAATTTGTTGGGCATTTTGGCGC
GGGAATGGCCGCAGAGACAGTCTCCTGCTTGATATACGTTCCCGTGGACG
TGGTGAAAGAACGCTTGCAAGTTCAACGTCGATTGCGGAGCGGACAAGAA
ATTTCTGGGACCCTACCTATGTACCGTGGGACGTGGCATGCACTATCAAC
CATCATGCAAACGGAAGGATTGAGGGGGGTATACAGAGGATACGGGGCAA
CACTGCTGTCCTTTGGTCCGTTCTCTGCTTTTTACTTTTTGTTCTACGAG
AAATTCAAGCAGTGGAGCGCGACCTCCGTGGGACTGGCCACACAAGAAGA
CTTGCCCTTCCACTTAACCTTAGCGTCAGCCGCTGGCGCTGGGTCTCTGG
CCTCTTTTATCACCAATCCTGTAGACTTGGTTCGACTCCGTCTGCAGGTG
CAACGAGGGTCTTCCTCCTCCTCGCCCTCCTCCTCCTCTTCCTCCCCCTC
CTCCACCCCCTCAGCGTCACCGCCGACGGTGCCAGCAACATCGAAACTTG
CCAACAATAGCTCCATTCATGGACATCACTCTCATCCAATGCCATCAATA
CTGCCACCACTTGGAGGAGGAGGAGGAAAAATAACGGCAGCAGCAGCGAA
GGTGGTAGTGGAGCAATACCACAACACTCTTGATGGATTGACCAAAGTAT
ACCGACGGGAGGGATTTCACGGCTTGTTTAAGGGCTCAGGGGCACGGATT
GCTTTTTATACTCCCTCGACGATGATTTCGATGAGTGTGTACGATACCTT
GAAGAGAGAATTCCATCACTTGCTTTCGAAGTGA
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protein sequence of NO06G03550.1

>NO06G03550.1-protein ID=NO06G03550.1-protein|Name=NO06G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MEGGEEVAAAGSSNQFLESMLASATAGVISRILCHPLDTCKARLQNPGSE
FSGTLQVVRQTLRHEGIGGLYRGLGTVISIGTPAFVLYLTTYEQAKKAFL
GMPALQDNYEFVGHFGAGMAAETVSCLIYVPVDVVKERLQVQRRLRSGQE
ISGTLPMYRGTWHALSTIMQTEGLRGVYRGYGATLLSFGPFSAFYFLFYE
KFKQWSATSVGLATQEDLPFHLTLASAAGAGSLASFITNPVDLVRLRLQV
QRGSSSSSPSSSSSSPSSTPSASPPTVPATSKLANNSSIHGHHSHPMPSI
LPPLGGGGGKITAAAAKVVVEQYHNTLDGLTKVYRREGFHGLFKGSGARI
AFYTPSTMISMSVYDTLKREFHHLLSK*
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mRNA from alignment at chr6:977021..978307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03550.1 ID=NO06G03550.1|Name=NO06G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp|location=Sequence derived from alignment at chr6:977021..978307+ (Nannochloropsis oceanica)
ATGGAGGGAGGGGAGGAGGTTGCTGCCGCGGGCTCGTCAAACCAGGTATG
TAAGGCCATCAGTCCTCACTATGACTTTTATTGCCTTGTCCTGCCCGACC
GACTTCCTAGATTGATTGGATGTCGGACCTTCTGAAGCCCCTTTTTCCCC
TTCCCCTTTCCAACGTCTCACTCAATCTCTTCCCCCACCCTTTTTGAGTT
CCTCGAGTCCATGCTCGCCAGTGCCACCGCCGGGGTCATCTCCCGGATCC
TCTGCCACCCCCTCGACACATGCAAAGCCCGTCTTCAAAATCCGGGGAGT
GAATTCTCGGGCACGTTGCAAGTGGTCCGACAGACGCTGCGGCATGAGGG
TATTGGTGGGTTGTATCGTGGGCTCGGCACCGTCATAAGCATTGGCACCC
CGGCCTTCGTCCTCTACCTCACCACGTACGAACAAGCCAAAAAGGCTTTC
CTGGGCATGCCAGCCCTACAAGACAACTATGAATTTGTTGGGCATTTTGG
CGCGGGAATGGCCGCAGAGACAGTCTCCTGCTTGATATACGTTCCCGTGG
ACGTGGTGAAAGAACGCTTGCAAGTTCAACGTCGATTGCGGAGCGGACAA
GAAATTTCTGGGACCCTACCTATGTACCGTGGGACGTGGCATGCACTATC
AACCATCATGCAAACGGAAGGATTGAGGGGGGTATACAGAGGATACGGGG
CAACACTGCTGTCCTTTGGTCCGTTCTCTGCTTTTTACTTTTTGTTCTAC
GAGAAATTCAAGCAGTGGAGCGCGACCTCCGTGGGACTGGCCACACAAGA
AGACTTGCCCTTCCACTTAACCTTAGCGTCAGCCGCTGGCGCTGGGTCTC
TGGCCTCTTTTATCACCAATCCTGTAGACTTGGTTCGACTCCGTCTGCAG
GTGCAACGAGGGTCTTCCTCCTCCTCGCCCTCCTCCTCCTCTTCCTCCCC
CTCCTCCACCCCCTCAGCGTCACCGCCGACGGTGCCAGCAACATCGAAAC
TTGCCAACAATAGCTCCATTCATGGACATCACTCTCATCCAATGCCATCA
ATACTGCCACCACTTGGAGGAGGAGGAGGAAAAATAACGGCAGCAGCAGC
GAAGGTGGTAGTGGAGCAATACCACAACACTCTTGATGGATTGACCAAAG
TATACCGACGGGAGGGATTTCACGGCTTGTTTAAGGGCTCAGGGGCACGG
ATTGCTTTTTATACTCCCTCGACGATGATTTCGATGAGTGTGTACGATAC
CTTGAAGAGAGAATTCCATCACTTGCTTTCGAAGTGA
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Coding sequence (CDS) from alignment at chr6:977021..978307+

>NO06G03550.1 ID=NO06G03550.1|Name=NO06G03550.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr6:977021..978307+ (Nannochloropsis oceanica)
ATGGAGGGAGGGGAGGAGGTTGCTGCCGCGGGCTCGTCAAACCAGTTCCT
CGAGTCCATGCTCGCCAGTGCCACCGCCGGGGTCATCTCCCGGATCCTCT
GCCACCCCCTCGACACATGCAAAGCCCGTCTTCAAAATCCGGGGAGTGAA
TTCTCGGGCACGTTGCAAGTGGTCCGACAGACGCTGCGGCATGAGGGTAT
TGGTGGGTTGTATCGTGGGCTCGGCACCGTCATAAGCATTGGCACCCCGG
CCTTCGTCCTCTACCTCACCACGTACGAACAAGCCAAAAAGGCTTTCCTG
GGCATGCCAGCCCTACAAGACAACTATGAATTTGTTGGGCATTTTGGCGC
GGGAATGGCCGCAGAGACAGTCTCCTGCTTGATATACGTTCCCGTGGACG
TGGTGAAAGAACGCTTGCAAGTTCAACGTCGATTGCGGAGCGGACAAGAA
ATTTCTGGGACCCTACCTATGTACCGTGGGACGTGGCATGCACTATCAAC
CATCATGCAAACGGAAGGATTGAGGGGGGTATACAGAGGATACGGGGCAA
CACTGCTGTCCTTTGGTCCGTTCTCTGCTTTTTACTTTTTGTTCTACGAG
AAATTCAAGCAGTGGAGCGCGACCTCCGTGGGACTGGCCACACAAGAAGA
CTTGCCCTTCCACTTAACCTTAGCGTCAGCCGCTGGCGCTGGGTCTCTGG
CCTCTTTTATCACCAATCCTGTAGACTTGGTTCGACTCCGTCTGCAGGTG
CAACGAGGGTCTTCCTCCTCCTCGCCCTCCTCCTCCTCTTCCTCCCCCTC
CTCCACCCCCTCAGCGTCACCGCCGACGGTGCCAGCAACATCGAAACTTG
CCAACAATAGCTCCATTCATGGACATCACTCTCATCCAATGCCATCAATA
CTGCCACCACTTGGAGGAGGAGGAGGAAAAATAACGGCAGCAGCAGCGAA
GGTGGTAGTGGAGCAATACCACAACACTCTTGATGGATTGACCAAAGTAT
ACCGACGGGAGGGATTTCACGGCTTGTTTAAGGGCTCAGGGGCACGGATT
GCTTTTTATACTCCCTCGACGATGATTTCGATGAGTGTGTACGATACCTT
GAAGAGAGAATTCCATCACTTGCTTTCGAAGTGA
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Synonyms
Publications