NO06G03370.1, NO06G03370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03370.1
Unique NameNO06G03370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length621
Alignment locationchr6:930383..931003 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:930383..931003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03370.1 vs.
Match: EWM26340.1 (ubiquitin-like protein atg12 [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 7.200e-30
Identity = 102/214 (47.66%), Postives = 124/214 (57.94%), Query Frame = 0 
Query:   19 EEDRYQQQASIPGPTA--PILPQA-----PPANETWD----------AASAMASFSIASTPQEEAEEGGDRGT-ISAALDASQEGTPPSTLDDSNTAKSVTI----SSQPSAP----STTPAVTNTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRALLPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYSLDEAWG 207
            EE+R +   S   P A  P +PQA     PP+  T             + A ++   A+TP   +  GG  G   S     S  GT       ++TA S +     S+Q SA      T PA  +  +VK+QLMAVGRAPRL QSKF VQA + FRAL PVLRRLLQL+E +ALF+FVNSAFAPAPEDKFGDL  CF + G LI+NYSLDEAWG
Sbjct:    2 EEEREEDATSSGAPAASPPSVPQAQAFDEPPSMPTLRIEREDDIPSRTSQATSTALTAATPAMCSRPGGPAGEDFSMNASTSTGGTVDLLRPSASTASSPSAPTPQSTQHSASLCPGQTAPA--HAARVKLQLMAVGRAPRLTQSKFFVQASEPFRALFPVLRRLLQLKESEALFVFVNSAFAPAPEDKFGDLQKCFSRGGALIINYSLDEAWG 213
The following BLAST results are available for this feature:
BLAST of NO06G03370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26340.17.200e-3047.66ubiquitin-like protein atg12 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03370NO06G03370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03370.1NO06G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03370.1.cds1NO06G03370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03370.1 ID=NO06G03370.1|Name=NO06G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=621bp
ATGGAGAAGGGCAGAAACGCGGCCACATCGGCGTCATCGTCTCAGTCACA
GCAGGAGGAGGATCGATACCAGCAGCAAGCAAGCATTCCCGGGCCAACAG
CGCCAATATTACCACAAGCACCACCAGCTAACGAAACTTGGGATGCTGCA
TCGGCAATGGCGAGCTTTTCTATTGCGTCCACACCGCAGGAGGAGGCAGA
GGAGGGCGGCGACAGGGGCACCATTTCAGCAGCATTGGACGCATCTCAAG
AAGGCACACCACCCAGCACCTTGGACGACAGTAACACTGCCAAAAGTGTG
ACGATTTCCTCCCAACCATCCGCTCCCTCAACCACCCCAGCTGTGACAAA
CACAGGCAAGGTCAAAGTGCAGCTGATGGCCGTCGGCCGCGCCCCTCGTC
TAGCCCAAAGCAAGTTCATAGTGCAAGCCAAGGACTCCTTTCGTGCCTTG
TTACCCGTGCTGCGTCGCTTGCTCCAATTGCGAGAGGACCAGGCGCTGTT
CCTATTTGTGAATTCAGCGTTTGCTCCTGCGCCGGAGGACAAGTTTGGTG
ACTTGTTTAATTGCTTTGGGAAGACTGGCACACTCATTGTCAATTACAGC
TTGGACGAGGCGTGGGGATGA
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protein sequence of NO06G03370.1

>NO06G03370.1-protein ID=NO06G03370.1-protein|Name=NO06G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MEKGRNAATSASSSQSQQEEDRYQQQASIPGPTAPILPQAPPANETWDAA
SAMASFSIASTPQEEAEEGGDRGTISAALDASQEGTPPSTLDDSNTAKSV
TISSQPSAPSTTPAVTNTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRAL
LPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYS
LDEAWG*
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mRNA from alignment at chr6:930383..931003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03370.1 ID=NO06G03370.1|Name=NO06G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=621bp|location=Sequence derived from alignment at chr6:930383..931003+ (Nannochloropsis oceanica)
ATGGAGAAGGGCAGAAACGCGGCCACATCGGCGTCATCGTCTCAGTCACA
GCAGGAGGAGGATCGATACCAGCAGCAAGCAAGCATTCCCGGGCCAACAG
CGCCAATATTACCACAAGCACCACCAGCTAACGAAACTTGGGATGCTGCA
TCGGCAATGGCGAGCTTTTCTATTGCGTCCACACCGCAGGAGGAGGCAGA
GGAGGGCGGCGACAGGGGCACCATTTCAGCAGCATTGGACGCATCTCAAG
AAGGCACACCACCCAGCACCTTGGACGACAGTAACACTGCCAAAAGTGTG
ACGATTTCCTCCCAACCATCCGCTCCCTCAACCACCCCAGCTGTGACAAA
CACAGGCAAGGTCAAAGTGCAGCTGATGGCCGTCGGCCGCGCCCCTCGTC
TAGCCCAAAGCAAGTTCATAGTGCAAGCCAAGGACTCCTTTCGTGCCTTG
TTACCCGTGCTGCGTCGCTTGCTCCAATTGCGAGAGGACCAGGCGCTGTT
CCTATTTGTGAATTCAGCGTTTGCTCCTGCGCCGGAGGACAAGTTTGGTG
ACTTGTTTAATTGCTTTGGGAAGACTGGCACACTCATTGTCAATTACAGC
TTGGACGAGGCGTGGGGATGA
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Coding sequence (CDS) from alignment at chr6:930383..931003+

>NO06G03370.1 ID=NO06G03370.1|Name=NO06G03370.1|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at chr6:930383..931003+ (Nannochloropsis oceanica)
ATGGAGAAGGGCAGAAACGCGGCCACATCGGCGTCATCGTCTCAGTCACA
GCAGGAGGAGGATCGATACCAGCAGCAAGCAAGCATTCCCGGGCCAACAG
CGCCAATATTACCACAAGCACCACCAGCTAACGAAACTTGGGATGCTGCA
TCGGCAATGGCGAGCTTTTCTATTGCGTCCACACCGCAGGAGGAGGCAGA
GGAGGGCGGCGACAGGGGCACCATTTCAGCAGCATTGGACGCATCTCAAG
AAGGCACACCACCCAGCACCTTGGACGACAGTAACACTGCCAAAAGTGTG
ACGATTTCCTCCCAACCATCCGCTCCCTCAACCACCCCAGCTGTGACAAA
CACAGGCAAGGTCAAAGTGCAGCTGATGGCCGTCGGCCGCGCCCCTCGTC
TAGCCCAAAGCAAGTTCATAGTGCAAGCCAAGGACTCCTTTCGTGCCTTG
TTACCCGTGCTGCGTCGCTTGCTCCAATTGCGAGAGGACCAGGCGCTGTT
CCTATTTGTGAATTCAGCGTTTGCTCCTGCGCCGGAGGACAAGTTTGGTG
ACTTGTTTAATTGCTTTGGGAAGACTGGCACACTCATTGTCAATTACAGC
TTGGACGAGGCGTGGGGATGA
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Synonyms
Publications