NO06G03320.1, NO06G03320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03320.1
Unique NameNO06G03320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1923
Alignment locationchr6:919992..921914 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:919992..921914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03320.1 vs.
Match: OQR80710.1 (hypothetical protein THRCLA_11943 [Thraustotheca clavata])

HSP 1 Score: 104.4 bits (259), Expect = 1.400e-18
Identity = 80/344 (23.26%), Postives = 180/344 (52.33%), Query Frame = 0 
Query:  241 MLVLDKNFLSKELEKVQAEHSATLHDLHLSKDKAQKLTLAREAWSQQLQNVKDEAQQAYQLHLDEERCRIT----AEQAGNRRTSQEVWERETTVLREARQEALLQADRSRQELHTLRHAHEDLVLQLAKQNTSAQATMASLRAEIKCKAYHLARVEALLEEKCRTFTSIQDILVTTQTQYQDCRDSLIRLEARVALKEHELSVALEKVRSYEVLETQLDAAVSSVRARGREGRRQGRQWIGSVP----RRMQHAILLATRLRDRDEEMIVVQKAQERAQEEAEGLRRQVGELQELLHHSSQPGRYVVELLREKDREVEGMKHQWQVMKTRAEVAEAQVQQLQL 577
            ++++DK +L+K+      +H    ++L  ++   ++L L++E + +Q+   ++E++  ++  +  E  ++      E    R T + V+ERE  +L+++RQ+AL Q + + +++  ++ A+ED VL++ + +     ++A +R E+K K + +A++    E+KC+        +   + +    +    +LE +   + ++L++  EK+++YE LE ++D A+  ++A G             +P    RR QH+I LA +L   ++ +    + +E+ Q   E L++++   +  L H  QP  Y++E L  K+ E++       V +TR    ++ +QQ Q+
Sbjct:  336 LIIIDKEYLAKDSSHHAEKHRQLANELEAARANIRRLELSKETFLEQVAQAREESKAVFEHRMQVELAKLQDLSKKELDALRDTGKAVFERENRMLKDSRQDALQQLELANKKIQDVQQAYEDKVLEITRLDAKFTTSVAEVRNELKIKHFEIAQLSRNYEDKCQLLHQAHLEIDMLKQKVDALKLEFQKLETQTTKQINQLTLEREKIKAYEALEVEMDQAI--LQAGGSANEDIATSTFALIPTAPKRRFQHSITLAQKLVQAEQTIQKQGEKEEQLQSRLEQLQKELEFAKSQLSHVPQPQNYLMEKLLMKEDELD-------VCQTRCRQLQSSLQQQQM 670
The following BLAST results are available for this feature:
BLAST of NO06G03320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR80710.11.400e-1823.26hypothetical protein THRCLA_11943 [Thraustotheca c... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03320NO06G03320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03320.1NO06G03320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03320.1.cds1NO06G03320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03320.1 ID=NO06G03320.1|Name=NO06G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp
ATGCGCACTCTTGACGAGGAGGTGGCAGATGGTAAGAATAGCCAGGCGCA
AGAGAGCCGCAGCGGTAGCAGCAGCAGCAACAGCAGTCGTGTTTCGTCTC
CACTTTCCCTGCCTGCCAGCATTGACGATGACCACCCCTTGCTATCGCGC
CGTCGCCACGAAAAGAACCGCGACAACAGCCACAAAATCATGTGTGAGGA
TAATCCTCGAACTTTAGATCTCGAAGCTCAAGTCGCACTTTTACAAGCGG
ACCAACGCAATGGTGAAAGAGGACGCATGCGGCTGGAGGAACAAATGCTT
CGTTTTCAGCAGCAGCACCTGGAGAATCAGCAGGAGCAACACCAGAAGGA
ACATACTGATGCACAAGCCTTGGATGATATCCGAAAGCAACTGCAAGAGT
CCCGGCGGCGCGTCGTCGGTCTCTCCGATCAGCTTGACTTTCACATGCAG
GAGAATGAGCGCCTCGCGAGGGAGACGGGGACACTCCGTACTGAAGCGCA
AGCAACAGCCAAGGAGTTACAAGCAGCTCGAGCCAAGATTCATTGTCAAG
CCCACAAAGAAAGGGTTTACGATGATGTCGCTGCCCGTCTCGATGCCGCT
GAGAAAACCAACGCTGACCTTCAAGCCCAATTCATTCAGCAAACCGCTGC
GTTGGCTCAGGCCAAGGCCGCTCATGATGCGATGCAGAAGCGTGCTGCCG
AGGCCATCCACTGTCAAGACATGTTAGTCTTAGACAAAAACTTTCTGTCC
AAGGAGCTAGAGAAAGTACAAGCCGAACACAGCGCAACGCTACACGACCT
CCATCTCTCAAAAGATAAGGCGCAGAAGCTGACCTTGGCCCGTGAGGCGT
GGAGCCAGCAGCTGCAAAATGTCAAGGACGAAGCCCAACAAGCCTATCAG
CTGCATTTGGATGAGGAGCGATGTCGGATAACGGCCGAGCAAGCGGGCAA
TAGAAGGACTTCCCAAGAGGTGTGGGAGCGTGAGACGACCGTGCTGCGGG
AGGCTCGGCAGGAAGCTCTGTTGCAAGCAGACCGCAGCCGGCAGGAGCTC
CACACGCTGCGACATGCACACGAAGATCTAGTGCTACAATTGGCAAAGCA
AAATACCAGTGCCCAGGCCACCATGGCCTCATTGAGAGCTGAAATTAAAT
GCAAGGCTTATCACTTAGCGAGGGTAGAAGCCCTGCTGGAGGAGAAGTGC
CGGACGTTTACATCCATACAAGATATACTGGTCACGACGCAGACACAATA
CCAAGATTGCCGGGATTCCTTGATACGATTGGAGGCCCGGGTGGCTCTGA
AAGAGCACGAGCTGTCTGTAGCTTTGGAGAAGGTCCGGTCGTACGAGGTC
CTTGAGACGCAGCTGGATGCAGCGGTGTCCTCGGTCAGGGCACGTGGGAG
GGAGGGTAGGAGGCAGGGTAGGCAATGGATTGGCTCGGTTCCTCGGCGAA
TGCAGCATGCCATTTTGTTGGCGACGCGTTTGCGGGATCGCGATGAAGAA
ATGATTGTCGTGCAAAAGGCGCAAGAACGCGCTCAGGAGGAAGCGGAAGG
GTTGCGGCGGCAGGTCGGTGAGCTGCAAGAGCTTTTGCATCATTCCTCAC
AACCGGGGCGGTATGTGGTGGAGTTACTCCGGGAAAAAGATAGAGAGGTG
GAAGGGATGAAACATCAGTGGCAGGTGATGAAGACAAGGGCGGAGGTGGC
GGAGGCGCAGGTGCAGCAGCTTCAGCTAGAAAGATCAAAGGAGAAAGAGA
CCACGCGACGAAGTTGGCGCAGAAAGGAGGAGAAGCTAATGGATGAAGAC
AGGATAGAAAAGAAGGAGAAGGGCAGGCAAAGGCTGAATCAGCGCCTTGT
CAAGCATTTGTTGCTCATGACAACGGCGCCGTGTGGAAATGGCAGAGGCC
CGAGGTGGCACACTAAACGTTAA
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protein sequence of NO06G03320.1

>NO06G03320.1-protein ID=NO06G03320.1-protein|Name=NO06G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MRTLDEEVADGKNSQAQESRSGSSSSNSSRVSSPLSLPASIDDDHPLLSR
RRHEKNRDNSHKIMCEDNPRTLDLEAQVALLQADQRNGERGRMRLEEQML
RFQQQHLENQQEQHQKEHTDAQALDDIRKQLQESRRRVVGLSDQLDFHMQ
ENERLARETGTLRTEAQATAKELQAARAKIHCQAHKERVYDDVAARLDAA
EKTNADLQAQFIQQTAALAQAKAAHDAMQKRAAEAIHCQDMLVLDKNFLS
KELEKVQAEHSATLHDLHLSKDKAQKLTLAREAWSQQLQNVKDEAQQAYQ
LHLDEERCRITAEQAGNRRTSQEVWERETTVLREARQEALLQADRSRQEL
HTLRHAHEDLVLQLAKQNTSAQATMASLRAEIKCKAYHLARVEALLEEKC
RTFTSIQDILVTTQTQYQDCRDSLIRLEARVALKEHELSVALEKVRSYEV
LETQLDAAVSSVRARGREGRRQGRQWIGSVPRRMQHAILLATRLRDRDEE
MIVVQKAQERAQEEAEGLRRQVGELQELLHHSSQPGRYVVELLREKDREV
EGMKHQWQVMKTRAEVAEAQVQQLQLERSKEKETTRRSWRRKEEKLMDED
RIEKKEKGRQRLNQRLVKHLLLMTTAPCGNGRGPRWHTKR*
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mRNA from alignment at chr6:919992..921914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03320.1 ID=NO06G03320.1|Name=NO06G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at chr6:919992..921914- (Nannochloropsis oceanica)
ATGCGCACTCTTGACGAGGAGGTGGCAGATGGTAAGAATAGCCAGGCGCA
AGAGAGCCGCAGCGGTAGCAGCAGCAGCAACAGCAGTCGTGTTTCGTCTC
CACTTTCCCTGCCTGCCAGCATTGACGATGACCACCCCTTGCTATCGCGC
CGTCGCCACGAAAAGAACCGCGACAACAGCCACAAAATCATGTGTGAGGA
TAATCCTCGAACTTTAGATCTCGAAGCTCAAGTCGCACTTTTACAAGCGG
ACCAACGCAATGGTGAAAGAGGACGCATGCGGCTGGAGGAACAAATGCTT
CGTTTTCAGCAGCAGCACCTGGAGAATCAGCAGGAGCAACACCAGAAGGA
ACATACTGATGCACAAGCCTTGGATGATATCCGAAAGCAACTGCAAGAGT
CCCGGCGGCGCGTCGTCGGTCTCTCCGATCAGCTTGACTTTCACATGCAG
GAGAATGAGCGCCTCGCGAGGGAGACGGGGACACTCCGTACTGAAGCGCA
AGCAACAGCCAAGGAGTTACAAGCAGCTCGAGCCAAGATTCATTGTCAAG
CCCACAAAGAAAGGGTTTACGATGATGTCGCTGCCCGTCTCGATGCCGCT
GAGAAAACCAACGCTGACCTTCAAGCCCAATTCATTCAGCAAACCGCTGC
GTTGGCTCAGGCCAAGGCCGCTCATGATGCGATGCAGAAGCGTGCTGCCG
AGGCCATCCACTGTCAAGACATGTTAGTCTTAGACAAAAACTTTCTGTCC
AAGGAGCTAGAGAAAGTACAAGCCGAACACAGCGCAACGCTACACGACCT
CCATCTCTCAAAAGATAAGGCGCAGAAGCTGACCTTGGCCCGTGAGGCGT
GGAGCCAGCAGCTGCAAAATGTCAAGGACGAAGCCCAACAAGCCTATCAG
CTGCATTTGGATGAGGAGCGATGTCGGATAACGGCCGAGCAAGCGGGCAA
TAGAAGGACTTCCCAAGAGGTGTGGGAGCGTGAGACGACCGTGCTGCGGG
AGGCTCGGCAGGAAGCTCTGTTGCAAGCAGACCGCAGCCGGCAGGAGCTC
CACACGCTGCGACATGCACACGAAGATCTAGTGCTACAATTGGCAAAGCA
AAATACCAGTGCCCAGGCCACCATGGCCTCATTGAGAGCTGAAATTAAAT
GCAAGGCTTATCACTTAGCGAGGGTAGAAGCCCTGCTGGAGGAGAAGTGC
CGGACGTTTACATCCATACAAGATATACTGGTCACGACGCAGACACAATA
CCAAGATTGCCGGGATTCCTTGATACGATTGGAGGCCCGGGTGGCTCTGA
AAGAGCACGAGCTGTCTGTAGCTTTGGAGAAGGTCCGGTCGTACGAGGTC
CTTGAGACGCAGCTGGATGCAGCGGTGTCCTCGGTCAGGGCACGTGGGAG
GGAGGGTAGGAGGCAGGGTAGGCAATGGATTGGCTCGGTTCCTCGGCGAA
TGCAGCATGCCATTTTGTTGGCGACGCGTTTGCGGGATCGCGATGAAGAA
ATGATTGTCGTGCAAAAGGCGCAAGAACGCGCTCAGGAGGAAGCGGAAGG
GTTGCGGCGGCAGGTCGGTGAGCTGCAAGAGCTTTTGCATCATTCCTCAC
AACCGGGGCGGTATGTGGTGGAGTTACTCCGGGAAAAAGATAGAGAGGTG
GAAGGGATGAAACATCAGTGGCAGGTGATGAAGACAAGGGCGGAGGTGGC
GGAGGCGCAGGTGCAGCAGCTTCAGCTAGAAAGATCAAAGGAGAAAGAGA
CCACGCGACGAAGTTGGCGCAGAAAGGAGGAGAAGCTAATGGATGAAGAC
AGGATAGAAAAGAAGGAGAAGGGCAGGCAAAGGCTGAATCAGCGCCTTGT
CAAGCATTTGTTGCTCATGACAACGGCGCCGTGTGGAAATGGCAGAGGCC
CGAGGTGGCACACTAAACGTTAA
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Coding sequence (CDS) from alignment at chr6:919992..921914-

>NO06G03320.1 ID=NO06G03320.1|Name=NO06G03320.1|organism=Nannochloropsis oceanica|type=CDS|length=1923bp|location=Sequence derived from alignment at chr6:919992..921914- (Nannochloropsis oceanica)
ATGCGCACTCTTGACGAGGAGGTGGCAGATGGTAAGAATAGCCAGGCGCA
AGAGAGCCGCAGCGGTAGCAGCAGCAGCAACAGCAGTCGTGTTTCGTCTC
CACTTTCCCTGCCTGCCAGCATTGACGATGACCACCCCTTGCTATCGCGC
CGTCGCCACGAAAAGAACCGCGACAACAGCCACAAAATCATGTGTGAGGA
TAATCCTCGAACTTTAGATCTCGAAGCTCAAGTCGCACTTTTACAAGCGG
ACCAACGCAATGGTGAAAGAGGACGCATGCGGCTGGAGGAACAAATGCTT
CGTTTTCAGCAGCAGCACCTGGAGAATCAGCAGGAGCAACACCAGAAGGA
ACATACTGATGCACAAGCCTTGGATGATATCCGAAAGCAACTGCAAGAGT
CCCGGCGGCGCGTCGTCGGTCTCTCCGATCAGCTTGACTTTCACATGCAG
GAGAATGAGCGCCTCGCGAGGGAGACGGGGACACTCCGTACTGAAGCGCA
AGCAACAGCCAAGGAGTTACAAGCAGCTCGAGCCAAGATTCATTGTCAAG
CCCACAAAGAAAGGGTTTACGATGATGTCGCTGCCCGTCTCGATGCCGCT
GAGAAAACCAACGCTGACCTTCAAGCCCAATTCATTCAGCAAACCGCTGC
GTTGGCTCAGGCCAAGGCCGCTCATGATGCGATGCAGAAGCGTGCTGCCG
AGGCCATCCACTGTCAAGACATGTTAGTCTTAGACAAAAACTTTCTGTCC
AAGGAGCTAGAGAAAGTACAAGCCGAACACAGCGCAACGCTACACGACCT
CCATCTCTCAAAAGATAAGGCGCAGAAGCTGACCTTGGCCCGTGAGGCGT
GGAGCCAGCAGCTGCAAAATGTCAAGGACGAAGCCCAACAAGCCTATCAG
CTGCATTTGGATGAGGAGCGATGTCGGATAACGGCCGAGCAAGCGGGCAA
TAGAAGGACTTCCCAAGAGGTGTGGGAGCGTGAGACGACCGTGCTGCGGG
AGGCTCGGCAGGAAGCTCTGTTGCAAGCAGACCGCAGCCGGCAGGAGCTC
CACACGCTGCGACATGCACACGAAGATCTAGTGCTACAATTGGCAAAGCA
AAATACCAGTGCCCAGGCCACCATGGCCTCATTGAGAGCTGAAATTAAAT
GCAAGGCTTATCACTTAGCGAGGGTAGAAGCCCTGCTGGAGGAGAAGTGC
CGGACGTTTACATCCATACAAGATATACTGGTCACGACGCAGACACAATA
CCAAGATTGCCGGGATTCCTTGATACGATTGGAGGCCCGGGTGGCTCTGA
AAGAGCACGAGCTGTCTGTAGCTTTGGAGAAGGTCCGGTCGTACGAGGTC
CTTGAGACGCAGCTGGATGCAGCGGTGTCCTCGGTCAGGGCACGTGGGAG
GGAGGGTAGGAGGCAGGGTAGGCAATGGATTGGCTCGGTTCCTCGGCGAA
TGCAGCATGCCATTTTGTTGGCGACGCGTTTGCGGGATCGCGATGAAGAA
ATGATTGTCGTGCAAAAGGCGCAAGAACGCGCTCAGGAGGAAGCGGAAGG
GTTGCGGCGGCAGGTCGGTGAGCTGCAAGAGCTTTTGCATCATTCCTCAC
AACCGGGGCGGTATGTGGTGGAGTTACTCCGGGAAAAAGATAGAGAGGTG
GAAGGGATGAAACATCAGTGGCAGGTGATGAAGACAAGGGCGGAGGTGGC
GGAGGCGCAGGTGCAGCAGCTTCAGCTAGAAAGATCAAAGGAGAAAGAGA
CCACGCGACGAAGTTGGCGCAGAAAGGAGGAGAAGCTAATGGATGAAGAC
AGGATAGAAAAGAAGGAGAAGGGCAGGCAAAGGCTGAATCAGCGCCTTGT
CAAGCATTTGTTGCTCATGACAACGGCGCCGTGTGGAAATGGCAGAGGCC
CGAGGTGGCACACTAAACGTTAA
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Synonyms
Publications