NO06G03310.1, NO06G03310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03310.1
Unique NameNO06G03310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1784
Alignment locationchr6:917788..919941 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:917788..919941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03310.1 vs.
Match: XP_005854346.1 (splicing factor U2AF 35 kDa subunit, partial [Nannochloropsis gaditana CCMP526]; EKU22012.1 splicing factor U2AF 35 kDa subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 476.5 bits (1225), Expect = 7.200e-131
Identity = 255/318 (80.19%), Postives = 277/318 (87.11%), Query Frame = 0 
Query:    1 MSHYGRGG-GEDYGRDRGDRGGRDRGGGGGYYEDRRGGDRRGGGDRRGPRDEGGRHWRDRHLGNAKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLRHMYKNPSSALFTAPARGERAAPQGAHDKTNQEGLEDFEDFFEEVYEELAKFGHLEGMHVCDNLGEHMIGNVYAKFSDEEEADEARQGLNGRYYAGQTLQVEFSPVTDFREARCRQYDEGQCSYGPYCNFLHVKTIGRGLRRDLERRARRRRERRSRSRSRSEEGGEKRERSRSGSAGREGERDREAREGEEDGAEGETAGKK 318
            MS+YGRGG G+DYGRDRG RGGRDRG  GGYYEDRRGGDRR   DRRGPR++GGR+WRDRHLGN+KGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLL+HMYKNP+SALFTAPARGERAAPQGA+D TNQ GL+DFEDFFEEVYEELAKFG +EGMHVCDNLGEHMIGNVYAK++DEEEADEARQ LNGR+YAG+ L+VEFSPVTDFREARCRQYDEGQC+YGPYCNFLHVKTI R LRRDLER+ARRRRER+   RSRSE+      RSRS   G      RE  E EED  E +   K+
Sbjct:    1 MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRN--DRRGPREDGGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQARRRRERK---RSRSED-----RRSRSSERGHR----REVGEEEEDRGEDDDLPKE 304
The following BLAST results are available for this feature:
BLAST of NO06G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854346.17.200e-13180.19splicing factor U2AF 35 kDa subunit, partial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03310NO06G03310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03310.1NO06G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03310.1.cds1NO06G03310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03310.1.cds2NO06G03310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03310.1.cds3NO06G03310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03310.1 ID=NO06G03310.1|Name=NO06G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
TGGGACGAGAGTGTGAGTGTGAGTGCCGTATGAGTGCCGTATGTTAAGTA
CTCTGCTTTGGAAAGCTGAAGGGACGCCGGGGCGTCGATGACAACACACC
AGGAAGGCAACAGACAACACGCACAGAAGCTTGTATGCCTTTTGGCTTTT
TACACCACCCTTGTCCCTCGCACTCATTGCATACAAGCTACCTTACAACT
CCTCAGTCCCTGGCTACAAATACGCAGATTGTTGCTGGATTCTCGTCCCT
GCCTGCCTAACTCTTTCTCTGCCCACTCTTATCACCATGAAGAATAAGCA
AGTCGCTTGTGGATTCCACCAAGCTCACTGTCCCTCCTCTCTTTTCCCGC
ACACACAGACGTTTCTCTCAGACATTCTTAAGCACCAAGCATGAGCCACT
ACGGGCGCGGTGGCGGAGAGGATTACGGCCGGGACCGTGGCGACCGCGGC
GGGCGTGATCGAGGAGGGGGAGGAGGCTACTATGAAGACCGCCGGGGCGG
GGACCGGCGAGGCGGCGGCGACCGACGCGGCCCTCGCGATGAAGGCGGGC
GCCACTGGCGCGATCGGCACCTGGGGAATGCCAAAGGCGGCGCCGAACAC
TTGGCTCGCATCCACGGCACGGAGGAAGACAAGGTCAACTGCCCCTTCTA
CTTTAAGATTGGGGCTTGCCGCCACGGAGAACGGTGCTCGCGTAAGCACA
ATAAGCCACCCTTCTCGCAGACGTTGCTATTGAGGCATATGTACAAGAAT
CCCTCGTCTGCTTTGTTTACGGCGCCAGCGCGGGGGGAGCGGGCGGCACC
GCAGGGGGCGCATGATAAGACGAATCAGGAGGGCTTGGAGGATTTCGAGG
ACTTCTTTGAGGAAGTCTATGAGGAACTAGCCAAATTCGGACATTTGGAA
GGAATGCACGTGTGTGACAACTTAGGCGAGCACATGATCGGGAACGTCTA
TGCCAAGTTTTCGGACGAGGAAGAGGCCGACGAAGCGCGACAAGGGCTGA
ATGGTCGTTATTACGCAGGACAGACACTGCAGGTGGAGTTCTCACCAGTC
ACAGATTTCAGGGAAGCGAGATGCCGTCAGTATGATGAAGGGCAGTGTAG
CTATGGCCCGTATTGCAACTTTTTGCACGTCAAGACGATCGGGCGGGGCT
TGAGGAGGGACCTGGAAAGGCGGGCGAGGAGGAGGAGGGAGAGGAGGAGC
AGGAGTAGAAGTCGATCGGAGGAGGGGGGAGAAAAGAGGGAGAGGAGTCG
CAGTGGGAGTGCGGGAAGGGAGGGGGAAAGGGATAGAGAGGCGAGAGAAG
GAGAAGAGGACGGGGCAGAAGGAGAGACAGCGGGGAAAAAGAAAGAGGAG
GGTGAGGAGGTGCTGGGGGGGACAAATGGTGGGGGAGTGCAAGAAGAGCA
GCCGATGGTGGGAGAAGGGGCAGCAGCTGCGGACGAGGTTTGAGAGAATA
TTGAGGGAGGGAGTAAGGGAGTGACGGAGGAAGGGAGGAAAGGCGGGAAC
TTCATGAGGTAGATCCTCGAAAGTTCTTATTTGTTTAGGCACGTTGGGCG
AGAGGGGGGTTTGAGGCGATGGAATGGGTCGAGGGACAGGGGAGAGATCG
AGGAAGAAGAAGACGGCAAACATAGAAGTGACAAAAAGGGGCTTGAATTT
AAAGCGGTAGACATGGCCACAAAGACCAAAAATAAGAGAAAGATTGCAGA
ATTGCACATTCTCAATCTGTTCGCTTGGGTGTGCTTACTGAAGGTCAAGT
ACAAGAATAACTTTGCCGAGAGTCACCACACACG
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protein sequence of NO06G03310.1

>NO06G03310.1-protein ID=NO06G03310.1-protein|Name=NO06G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MSHYGRGGGEDYGRDRGDRGGRDRGGGGGYYEDRRGGDRRGGGDRRGPRD
EGGRHWRDRHLGNAKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCS
RKHNKPPFSQTLLLRHMYKNPSSALFTAPARGERAAPQGAHDKTNQEGLE
DFEDFFEEVYEELAKFGHLEGMHVCDNLGEHMIGNVYAKFSDEEEADEAR
QGLNGRYYAGQTLQVEFSPVTDFREARCRQYDEGQCSYGPYCNFLHVKTI
GRGLRRDLERRARRRRERRSRSRSRSEEGGEKRERSRSGSAGREGERDRE
AREGEEDGAEGETAGKKKEEGEEVLGGTNGGGVQEEQPMVGEGAAAADEV
*
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mRNA from alignment at chr6:917788..919941+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03310.1 ID=NO06G03310.1|Name=NO06G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp|location=Sequence derived from alignment at chr6:917788..919941+ (Nannochloropsis oceanica)
TGGGACGAGAGTGTGAGTGTGAGTGCCGTATGAGTGCCGTATGTTAAGTA
CTCTGCTTTGGAAAGCTGAAGGGACGCCGGGGCGTCGATGACAACACACC
AGGAAGGCAACAGACAACACGCACAGAAGCTTGTATGCCTTTTGGCTTTT
TACACCACCCTTGTCCCTCGCACTCATTGCATACAAGCTACCTTACAACT
CCTCAGTCCCTGGCTACAAATACGCAGATTGTTGCTGGATTCTCGTCCCT
GCCTGCCTAACTCTTTCTCTGCCCACTCTTATCACCATGAAGAATAAGCA
AGTCGCTTGTGGATTCCACCAAGCTCACTGTCCCTCCTCTCTTTTCCCGC
ACACACAGACGTTTCTCTCAGACATTCTTAAGCACCAAGCATGAGCCACT
ACGGGCGCGGTGGCGGAGAGGATTACGGCCGGGACCGTGGCGACCGCGGC
GGGCGTGATCGAGGAGGGGGAGGAGGCTACTATGAAGACCGCCGGGGCGG
GGACCGGCGAGGCGGCGGCGACCGACGCGGTACGTTACTCGTGTTGGTAT
GACATGTGTGTGTGTGAGGGTGGGGCGTTCTTTACTTGTGCGGGAAAGGC
TGACTTGTCTTGTCCCTGCTCCTATCGATCGTCATCCGTCCGTACTCACT
CCTTCTTTCCTTTTCCTCCTCCCGCTTTTCCTGAAATAACAATAGGCCCT
CGCGATGAAGGCGGGCGCCACTGGCGCGATCGGCACCTGGGGAATGCCAA
AGGCGGCGCCGAACACTTGGCTCGCATCCACGGCACGGAGGAAGACAAGG
TCAACTGCCCCTTCTACTTTAAGATTGGGGCTTGCCGCCACGGAGAACGG
TGCTCGCGTAAGCACAATAAGCCACCCTTCTCGCAGACGTTGCTATTGAG
GCATATGTACAAGAATCCCTCGTCTGCTTTGTTTACGGCGCCAGCGCGGG
GGGAGCGGGCGGCACCGCAGGGGGCGCATGATAAGACGAATCAGGAGGGC
TTGGAGGATTTCGAGGACTTCTTTGAGGAAGTCTATGAGGTGGGTGCATT
TGCTCTATTTGCGTGATGTTTGTCTTTGGTGGTCCCTGTCTGCCTTTATT
TGTGGAAGATTTCTCTCGAATACCTACTTCTTGACTCTCACACAAACATG
TCTTGCGCTGATCTTTTCTGGTTGCCCCTTCCTTCCCCAACCATTATTTA
ACTTCCTGCCCCCCCCTCTCTCTCGTGCCCCTCTCTTTTGTAGGAACTAG
CCAAATTCGGACATTTGGAAGGAATGCACGTGTGTGACAACTTAGGCGAG
CACATGATCGGGAACGTCTATGCCAAGTTTTCGGACGAGGAAGAGGCCGA
CGAAGCGCGACAAGGGCTGAATGGTCGTTATTACGCAGGACAGACACTGC
AGGTGGAGTTCTCACCAGTCACAGATTTCAGGGAAGCGAGATGCCGTCAG
TATGATGAAGGGCAGTGTAGCTATGGCCCGTATTGCAACTTTTTGCACGT
CAAGACGATCGGGCGGGGCTTGAGGAGGGACCTGGAAAGGCGGGCGAGGA
GGAGGAGGGAGAGGAGGAGCAGGAGTAGAAGTCGATCGGAGGAGGGGGGA
GAAAAGAGGGAGAGGAGTCGCAGTGGGAGTGCGGGAAGGGAGGGGGAAAG
GGATAGAGAGGCGAGAGAAGGAGAAGAGGACGGGGCAGAAGGAGAGACAG
CGGGGAAAAAGAAAGAGGAGGGTGAGGAGGTGCTGGGGGGGACAAATGGT
GGGGGAGTGCAAGAAGAGCAGCCGATGGTGGGAGAAGGGGCAGCAGCTGC
GGACGAGGTTTGAGAGAATATTGAGGGAGGGAGTAAGGGAGTGACGGAGG
AAGGGAGGAAAGGCGGGAACTTCATGAGGTAGATCCTCGAAAGTTCTTAT
TTGTTTAGGCACGTTGGGCGAGAGGGGGGTTTGAGGCGATGGAATGGGTC
GAGGGACAGGGGAGAGATCGAGGAAGAAGAAGACGGCAAACATAGAAGTG
ACAAAAAGGGGCTTGAATTTAAAGCGGTAGACATGGCCACAAAGACCAAA
AATAAGAGAAAGATTGCAGAATTGCACATTCTCAATCTGTTCGCTTGGGT
GTGCTTACTGAAGGTCAAGTACAAGAATAACTTTGCCGAGAGTCACCACA
CACG
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Coding sequence (CDS) from alignment at chr6:917788..919941+

>NO06G03310.1 ID=NO06G03310.1|Name=NO06G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr6:917788..919941+ (Nannochloropsis oceanica)
ATGAGCCACTACGGGCGCGGTGGCGGAGAGGATTACGGCCGGGACCGTGG
CGACCGCGGCGGGCGTGATCGAGGAGGGGGAGGAGGCTACTATGAAGACC
GCCGGGGCGGGGACCGGCGAGGCGGCGGCGACCGACGCGGCCCTCGCGAT
GAAGGCGGGCGCCACTGGCGCGATCGGCACCTGGGGAATGCCAAAGGCGG
CGCCGAACACTTGGCTCGCATCCACGGCACGGAGGAAGACAAGGTCAACT
GCCCCTTCTACTTTAAGATTGGGGCTTGCCGCCACGGAGAACGGTGCTCG
CGTAAGCACAATAAGCCACCCTTCTCGCAGACGTTGCTATTGAGGCATAT
GTACAAGAATCCCTCGTCTGCTTTGTTTACGGCGCCAGCGCGGGGGGAGC
GGGCGGCACCGCAGGGGGCGCATGATAAGACGAATCAGGAGGGCTTGGAG
GATTTCGAGGACTTCTTTGAGGAAGTCTATGAGGAACTAGCCAAATTCGG
ACATTTGGAAGGAATGCACGTGTGTGACAACTTAGGCGAGCACATGATCG
GGAACGTCTATGCCAAGTTTTCGGACGAGGAAGAGGCCGACGAAGCGCGA
CAAGGGCTGAATGGTCGTTATTACGCAGGACAGACACTGCAGGTGGAGTT
CTCACCAGTCACAGATTTCAGGGAAGCGAGATGCCGTCAGTATGATGAAG
GGCAGTGTAGCTATGGCCCGTATTGCAACTTTTTGCACGTCAAGACGATC
GGGCGGGGCTTGAGGAGGGACCTGGAAAGGCGGGCGAGGAGGAGGAGGGA
GAGGAGGAGCAGGAGTAGAAGTCGATCGGAGGAGGGGGGAGAAAAGAGGG
AGAGGAGTCGCAGTGGGAGTGCGGGAAGGGAGGGGGAAAGGGATAGAGAG
GCGAGAGAAGGAGAAGAGGACGGGGCAGAAGGAGAGACAGCGGGGAAAAA
GAAAGAGGAGGGTGAGGAGGTGCTGGGGGGGACAAATGGTGGGGGAGTGC
AAGAAGAGCAGCCGATGGTGGGAGAAGGGGCAGCAGCTGCGGACGAGGTT
TGA
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Synonyms
Publications