NO06G02970.1, NO06G02970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02970.1
Unique NameNO06G02970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1107
Alignment locationchr6:849534..851315 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:849534..851315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02970.1 vs.
Match: XP_005853752.1 (hypothetical protein NGA_0453300 [Nannochloropsis gaditana CCMP526]; EKU22612.1 hypothetical protein NGA_0453300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 411.8 bits (1057), Expect = 2.300e-111
Identity = 230/362 (63.54%), Postives = 273/362 (75.41%), Query Frame = 0 
Query:   10 MLQSWLRRWRAGERTLLFGARRLASSTIIPSSSGSSSTLASSTILPTAAVVVATTRRTFATAAKATPKKAAQLPLSSSLAAASAPLTKTRKGGLKPKKKKGKRPSVTAAYLKKREEQLAKHEVAAKQADLPWLIVAASIVERLPIIMKEPEAWEAAYMEMQEEIARHGKAFPKELDVMGQANEMDRPDAEILPELPFKLAPRVTKADRLNDRTTLNRALSERLFLLVKGPITGDRWDLPMAVLGKGGKDGRD---SMRRTHEATVGRFLGEKFEAYMPSNAPVGMHWRVPAATAGASSVGAGGNVYGEKVFFYRAQHLKGRGRVVEEGVEEFVWVTREEVGEYLPQETGEEKEYAQLVMNVL 369
            ML  WLR+    +R L  G R +A+ T   S+  +     +   LP        ++R+F T+A  T  +A   P S +  ++S    K +KGGLKPKKKKGKRPS TAAYL+ R  QL++HE AAK+A+LPW IVAASIVER PIIMKEPE WEAAYMEMQEEIA+HGK FP EL++MGQA E+DR D E+LPELPFKLAPRVTKADRLNDRTTLNRAL+ERLFLL++GP+T  RWDLPMAVL  GGK G     SMR+THEATV RFLG+KFEAY+PSNAPVGMHWRVP+  +   +   G   YG+KVFFYRAQHLKGRG+VV EGVEEFVWVTREE+GEYLPQ + EEKEYA+L+ N+L
Sbjct:    1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVA----SKRSFRTSAIRT-SEADTAPSSPTPPSSSG---KGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKT--GGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352
The following BLAST results are available for this feature:
BLAST of NO06G02970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853752.12.300e-11163.54hypothetical protein NGA_0453300 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02970NO06G02970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02970.1NO06G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02970.1.cds1NO06G02970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02970.1.cds2NO06G02970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02970.1.cds3NO06G02970.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02970.1.cds4NO06G02970.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02970.1 ID=NO06G02970.1|Name=NO06G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGTTGGCCACCTCCGACACAACAGGTATGCTGCAATCTTGGTTACGGCG
CTGGCGCGCGGGCGAAAGGACGCTTTTATTTGGAGCAAGACGGCTTGCCT
CCTCCACCATCATCCCAAGCAGCAGCGGCAGCAGCAGTACATTAGCCTCT
TCCACCATTCTCCCCACCGCAGCAGTAGTAGTGGCCACCACCAGAAGAAC
ATTCGCAACGGCTGCTAAGGCCACACCGAAGAAAGCCGCACAACTACCGT
TATCCTCATCACTAGCTGCTGCGTCCGCGCCCCTCACCAAGACTAGAAAG
GGTGGTCTCAAGCCCAAGAAGAAAAAGGGCAAGCGGCCCTCGGTCACAGC
GGCGTATCTCAAAAAGCGTGAAGAGCAGCTGGCCAAGCATGAAGTGGCCG
CTAAGCAAGCTGATTTGCCCTGGCTCATTGTCGCAGCTAGCATCGTGGAG
CGCCTCCCCATTATAATGAAGGAACCCGAGGCCTGGGAAGCGGCCTACAT
GGAAATGCAAGAGGAGATTGCAAGGCACGGCAAGGCTTTCCCCAAAGAGC
TCGATGTGATGGGTCAAGCCAACGAGATGGACCGTCCGGATGCCGAGATT
CTGCCCGAGTTGCCCTTCAAGCTTGCCCCACGCGTCACGAAAGCTGACCG
TTTAAATGATCGGACGACGTTAAACCGGGCGTTAAGCGAACGTTTGTTCC
TGTTGGTCAAAGGGCCCATCACGGGGGATAGGTGGGATCTACCTATGGCG
GTATTGGGGAAAGGAGGAAAGGACGGAAGGGATTCAATGAGGAGGACTCA
CGAGGCGACGGTGGGAAGGTTTTTGGGGGAGAAGTTTGAGGCCTATATGC
CGTCGAACGCTCCAGTAGGGATGCATTGGAGGGTGCCAGCAGCGACCGCA
GGGGCATCATCAGTAGGGGCAGGGGGAAATGTGTACGGAGAGAAGGTCTT
CTTTTACCGGGCGCAGCATTTGAAGGGGAGGGGAAGGGTGGTGGAGGAGG
GGGTGGAAGAGTTTGTTTGGGTGACGAGGGAGGAGGTGGGTGAGTATCTG
CCGCAGGAGACGGGAGAGGAGAAAGAGTACGCACAACTGGTGATGAATGT
GTTATAA
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protein sequence of NO06G02970.1

>NO06G02970.1-protein ID=NO06G02970.1-protein|Name=NO06G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MLATSDTTGMLQSWLRRWRAGERTLLFGARRLASSTIIPSSSGSSSTLAS
STILPTAAVVVATTRRTFATAAKATPKKAAQLPLSSSLAAASAPLTKTRK
GGLKPKKKKGKRPSVTAAYLKKREEQLAKHEVAAKQADLPWLIVAASIVE
RLPIIMKEPEAWEAAYMEMQEEIARHGKAFPKELDVMGQANEMDRPDAEI
LPELPFKLAPRVTKADRLNDRTTLNRALSERLFLLVKGPITGDRWDLPMA
VLGKGGKDGRDSMRRTHEATVGRFLGEKFEAYMPSNAPVGMHWRVPAATA
GASSVGAGGNVYGEKVFFYRAQHLKGRGRVVEEGVEEFVWVTREEVGEYL
PQETGEEKEYAQLVMNVL*
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mRNA from alignment at chr6:849534..851315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02970.1 ID=NO06G02970.1|Name=NO06G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp|location=Sequence derived from alignment at chr6:849534..851315+ (Nannochloropsis oceanica)
ATGTTGGCCACCTCCGGTAAGCGCCTTAAACATCCTTTTCTAAAAGACGC
ACTCTAAAGGAACAGGTACAAGTCGTATCGTCGCTCGTCGGCGTCGTCAT
GAAGGATCCTTGCCTTTATTGCGTCCATCCATGCTTCTGATACGCTCCCT
TGTGAGGCCTTTCACATCCACACCCTTCCCCACGAACCCAGACACAACAG
GTATGCTGCAATCTTGGTTACGGCGCTGGCGCGCGGGCGAAAGGACGCTT
TTATTTGGAGCAAGACGGCTTGCCTCCTCCACCATCATCCCAAGCAGCAG
CGGCAGCAGCAGTACATTAGCCTCTTCCACCATTCTCCCCACCGCAGCAG
TAGTAGTGGCCACCACCAGAAGAACATTCGCAACGGCTGCTAAGGCCACA
CCGAAGAAAGCCGCACAACTACCGTTATCCTCATCACTAGCTGCTGCGTC
CGCGCCCCTCACCAAGACTAGAAAGGGTGGTCTCAAGCCCAAGAAGAAAA
AGGGCAAGCGGCCCTCGGTCACAGCGGCGTATCTCAAAAAGCGTGAAGAG
CAGCTGGCCAAGCATGAAGTGGCCGCTAAGCAAGCTGATTTGCCCTGGCT
CATTGTCGCAGCTAGGTACGTAAATGGAGCACTGGGCTCTCTCTATTGGT
GTGTTGCGTGGAATCTTCTTTTCACTTGCTGCAGGCATCATCCGCTTTAA
TCCGCTTTGATTTAGCTCTACCTGCTATCGTCGTACAGGCATTTTAACTC
CTTACACTATCACTTTCACCAATACGAACTATAATAGCATCGTGGAGCGC
CTCCCCATTATAATGAAGGAACCCGAGGCCTGGGAAGCGGCCTACATGGA
AATGCAAGAGGAGATTGCAAGGCACGGCAAGGTAATGAAAAAGGGAGAAA
CATCTCGTGGAGAGTAGATACAATCTGTTTCTATTCCTTCGCCCTTATTG
TTTCCTTGTTTTGGTCTTTCTCTTATTCCATAACCCTGCCCAAGGGTTGG
GAGCCGCCTGTCCACTTGGGGTCGCAGAAGGAGATTGTGAAGCAACGTTT
TTTTTAAAATCACATGTCTGTTTCCCTTCCACATGCTAATCTACCTCCAT
TTAGTCTTTACGCGTAAATCTGGAAAGCCACTGGGCCATTCACGGTGCCT
CAGCTCGTTTCTCTGCTTCCCTCCCTCCCTCCCTCCCTCCCTTGTCCCCC
TCTCCCTAGGCTTTCCCCAAAGAGCTCGATGTGATGGGTCAAGCCAACGA
GATGGACCGTCCGGATGCCGAGATTCTGCCCGAGTTGCCCTTCAAGCTTG
CCCCACGCGTCACGAAAGCTGACCGTTTAAATGATCGGACGACGTTAAAC
CGGGCGTTAAGCGAACGTTTGTTCCTGTTGGTCAAAGGGCCCATCACGGG
GGATAGGTGGGATCTACCTATGGCGGTATTGGGGAAAGGAGGAAAGGACG
GAAGGGATTCAATGAGGAGGACTCACGAGGCGACGGTGGGAAGGTTTTTG
GGGGAGAAGTTTGAGGCCTATATGCCGTCGAACGCTCCAGTAGGGATGCA
TTGGAGGGTGCCAGCAGCGACCGCAGGGGCATCATCAGTAGGGGCAGGGG
GAAATGTGTACGGAGAGAAGGTCTTCTTTTACCGGGCGCAGCATTTGAAG
GGGAGGGGAAGGGTGGTGGAGGAGGGGGTGGAAGAGTTTGTTTGGGTGAC
GAGGGAGGAGGTGGGTGAGTATCTGCCGCAGGAGACGGGAGAGGAGAAAG
AGTACGCACAACTGGTGATGAATGTGTTATAA
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Coding sequence (CDS) from alignment at chr6:849534..851315+

>NO06G02970.1 ID=NO06G02970.1|Name=NO06G02970.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr6:849534..851315+ (Nannochloropsis oceanica)
ATGTTGGCCACCTCCGACACAACAGGTATGCTGCAATCTTGGTTACGGCG
CTGGCGCGCGGGCGAAAGGACGCTTTTATTTGGAGCAAGACGGCTTGCCT
CCTCCACCATCATCCCAAGCAGCAGCGGCAGCAGCAGTACATTAGCCTCT
TCCACCATTCTCCCCACCGCAGCAGTAGTAGTGGCCACCACCAGAAGAAC
ATTCGCAACGGCTGCTAAGGCCACACCGAAGAAAGCCGCACAACTACCGT
TATCCTCATCACTAGCTGCTGCGTCCGCGCCCCTCACCAAGACTAGAAAG
GGTGGTCTCAAGCCCAAGAAGAAAAAGGGCAAGCGGCCCTCGGTCACAGC
GGCGTATCTCAAAAAGCGTGAAGAGCAGCTGGCCAAGCATGAAGTGGCCG
CTAAGCAAGCTGATTTGCCCTGGCTCATTGTCGCAGCTAGCATCGTGGAG
CGCCTCCCCATTATAATGAAGGAACCCGAGGCCTGGGAAGCGGCCTACAT
GGAAATGCAAGAGGAGATTGCAAGGCACGGCAAGGCTTTCCCCAAAGAGC
TCGATGTGATGGGTCAAGCCAACGAGATGGACCGTCCGGATGCCGAGATT
CTGCCCGAGTTGCCCTTCAAGCTTGCCCCACGCGTCACGAAAGCTGACCG
TTTAAATGATCGGACGACGTTAAACCGGGCGTTAAGCGAACGTTTGTTCC
TGTTGGTCAAAGGGCCCATCACGGGGGATAGGTGGGATCTACCTATGGCG
GTATTGGGGAAAGGAGGAAAGGACGGAAGGGATTCAATGAGGAGGACTCA
CGAGGCGACGGTGGGAAGGTTTTTGGGGGAGAAGTTTGAGGCCTATATGC
CGTCGAACGCTCCAGTAGGGATGCATTGGAGGGTGCCAGCAGCGACCGCA
GGGGCATCATCAGTAGGGGCAGGGGGAAATGTGTACGGAGAGAAGGTCTT
CTTTTACCGGGCGCAGCATTTGAAGGGGAGGGGAAGGGTGGTGGAGGAGG
GGGTGGAAGAGTTTGTTTGGGTGACGAGGGAGGAGGTGGGTGAGTATCTG
CCGCAGGAGACGGGAGAGGAGAAAGAGTACGCACAACTGGTGATGAATGT
GTTATAA
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Synonyms
Publications