NO06G02950.1, NO06G02950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02950.1
Unique NameNO06G02950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length918
Alignment locationchr6:847483..848522 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:847483..848522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02950.1 vs.
Match: EWM26306.1 (nad-dependent epimerase dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 401.4 bits (1030), Expect = 2.600e-108
Identity = 204/281 (72.60%), Postives = 233/281 (82.92%), Query Frame = 0 
Query:   25 PASTQQTYARQRSPSTLTMAAA-LKTGDRVVVIGSTGGCGQLIAARLANAGKYKVRAIGRSQTKLQDVLGSNSG-IDLDVADSTNLDSLLAPLSDADCVIIATGTSAFPSPRWKNGNTPDAVDRKGVQNILQALTSKPRKRPVKKVIFLSSIGVLRAKSLPYSILNLFGVLDAKRDSEEFLKSMATTEDFDYVIVRPGRLVGGPWTNTDVSALLKVEEGTRKRVVVEKGDALVGDAARISVAELVARALDRPEAVGKELCLVNEEGSPFSEGDWERLFEGL 304
            P     +YA ++S S  TM A  LK  DRV VIGSTGGCGQLI ARL + G+Y+V+A+GRS+ KL++VLG  S  ++   ADS ++DSL  PLSD DCVIIATGTSAFPSPRW+ GNTPDAVDRKGVQNIL+A+TSKPRKR VKKV+FLSS+GVLR K LPYSILN FGVLDAKRDSE+ L+ MA TE FD +IVRPGRLVGGPWTNTDVSALLKVEEG RKRVVVE+GD+LVGDAAR+SVAELV RAL RPEA+G+ LC+VNEEG PFSEG W  LFEGL
Sbjct:   38 PRHASASYAGRKSTSPFTMMAVELKVNDRVCVIGSTGGCGQLITARLVDEGRYQVKAVGRSEAKLREVLGGESPKLEFAEADSRDIDSLYGPLSDVDCVIIATGTSAFPSPRWRGGNTPDAVDRKGVQNILKAITSKPRKRTVKKVVFLSSVGVLRTKQLPYSILNAFGVLDAKRDSEDLLRQMAATEGFDILIVRPGRLVGGPWTNTDVSALLKVEEGARKRVVVEQGDSLVGDAARVSVAELVVRALGRPEAMGRALCVVNEEGPPFSEGQWTALFEGL 318
The following BLAST results are available for this feature:
BLAST of NO06G02950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26306.12.600e-10872.60nad-dependent epimerase dehydratase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02950NO06G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02950.1NO06G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02950.1.cds1NO06G02950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02950.1.cds2NO06G02950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02950.1 ID=NO06G02950.1|Name=NO06G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
ATGTCTCGCCTGCTCATCCTCGCGGGCCTGCTTTCCTTGCTGATACCTGT
GGGCGTTCTGGGCTTCTTTTGCCCGGCTTCCACTCAGCAAACCTATGCTC
GCCAACGCAGCCCAAGCACACTTACCATGGCGGCCGCGCTGAAGACTGGG
GACCGCGTCGTTGTCATTGGTTCGACGGGTGGGTGCGGCCAGCTGATTGC
CGCCCGGCTAGCCAATGCTGGCAAGTACAAGGTCCGGGCGATTGGGCGGA
GCCAGACCAAGCTGCAGGACGTGCTGGGTAGTAATAGCGGCATCGACTTG
GACGTTGCTGACTCTACCAACCTGGACTCCTTGCTCGCGCCCTTGAGTGA
TGCTGATTGCGTCATTATTGCCACGGGCACCAGCGCATTCCCCTCTCCAC
GCTGGAAGAATGGTAACACCCCCGATGCCGTGGACCGCAAGGGCGTACAA
AACATTTTGCAGGCCCTGACAAGTAAACCACGAAAGCGTCCCGTCAAAAA
AGTGATTTTCCTGAGCTCAATCGGCGTGCTCCGCGCCAAGTCTCTGCCTT
ACTCGATTTTAAATTTGTTTGGGGTTCTGGATGCTAAGAGGGATAGCGAG
GAGTTTTTGAAATCAATGGCAACCACGGAGGACTTTGATTACGTAATTGT
GCGACCCGGGCGATTGGTTGGCGGGCCTTGGACAAATACCGACGTCAGCG
CCCTCCTGAAAGTCGAGGAAGGGACAAGGAAACGAGTGGTGGTCGAGAAG
GGCGATGCGTTAGTAGGTGATGCCGCGCGAATTTCAGTCGCTGAATTGGT
GGCTCGGGCGCTGGATAGACCGGAGGCAGTGGGAAAGGAGTTGTGCTTGG
TGAACGAGGAGGGGAGTCCGTTTTCGGAGGGGGATTGGGAGAGGCTGTTT
GAGGGGTTAAAGGGGTAA
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protein sequence of NO06G02950.1

>NO06G02950.1-protein ID=NO06G02950.1-protein|Name=NO06G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MSRLLILAGLLSLLIPVGVLGFFCPASTQQTYARQRSPSTLTMAAALKTG
DRVVVIGSTGGCGQLIAARLANAGKYKVRAIGRSQTKLQDVLGSNSGIDL
DVADSTNLDSLLAPLSDADCVIIATGTSAFPSPRWKNGNTPDAVDRKGVQ
NILQALTSKPRKRPVKKVIFLSSIGVLRAKSLPYSILNLFGVLDAKRDSE
EFLKSMATTEDFDYVIVRPGRLVGGPWTNTDVSALLKVEEGTRKRVVVEK
GDALVGDAARISVAELVARALDRPEAVGKELCLVNEEGSPFSEGDWERLF
EGLKG*
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mRNA from alignment at chr6:847483..848522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02950.1 ID=NO06G02950.1|Name=NO06G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1040bp|location=Sequence derived from alignment at chr6:847483..848522+ (Nannochloropsis oceanica)
ATGTCTCGCCTGCTCATCCTCGCGGGCCTGCTTTCCTTGCTGATACCTGT
GGGCGTTCTGGGCTTCTTTTGCCCGGCTTCCACTCAGCAAACCTATGCTC
GCCAACGCAGCCCAAGCACACTTACCATGGCGGCCGCGCTGAAGACTGGG
GACCGCGTCGTTGTCATTGGTTCGACGGGTGGGTGCGGCCAGCTGATTGC
CGCCCGGCTAGCCAATGCTGGCAAGTACAAGGTCCGGGCGATTGGGCGGA
GCCAGACCAAGCTGCAGGACGTGCTGGGTAGTAATAGCGGCATCGACTTG
GACGTTGCTGACTCTACCAACCTGGACTCCTTGCTCGCGCCCTTGAGTGA
TGCTGATTGCGTCATTATTGCCACGGGCACCAGCGCATTCCCCTCTCCAC
GCTGGAAGAATGGTAACACCCCCGATGCCGTGGACCGCAAGGGCGTACAA
AACATTTTGCAGGCCCTGACAAGTAAACCACGAAAGCGTCCCGTCAAAAA
AGTGATTTTCCTGAGCTCAATCGGCGTGCTCCGCGCCAAGTCTCTGCCTT
ACTCGATTTTAAATTTGTTTGGGGTTCTGGATGCTAAGAGGGATAGCGAG
GAGTTTTTGAAATCAATGGCAACCACGGAGGACTTTGATTACGTAATTGT
AAGTCCGAGGGGGAGGAGAGAGGGATGGAGGAGTAGACAAGTAGATGCAC
GAACATTCCGCTATTTGGATCGAATCATGACTTATTTTATTCCTCCACCT
CTTCCCCTTGCTAAATGCAGGTGCGACCCGGGCGATTGGTTGGCGGGCCT
TGGACAAATACCGACGTCAGCGCCCTCCTGAAAGTCGAGGAAGGGACAAG
GAAACGAGTGGTGGTCGAGAAGGGCGATGCGTTAGTAGGTGATGCCGCGC
GAATTTCAGTCGCTGAATTGGTGGCTCGGGCGCTGGATAGACCGGAGGCA
GTGGGAAAGGAGTTGTGCTTGGTGAACGAGGAGGGGAGTCCGTTTTCGGA
GGGGGATTGGGAGAGGCTGTTTGAGGGGTTAAAGGGGTAA
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Coding sequence (CDS) from alignment at chr6:847483..848522+

>NO06G02950.1 ID=NO06G02950.1|Name=NO06G02950.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr6:847483..848522+ (Nannochloropsis oceanica)
ATGTCTCGCCTGCTCATCCTCGCGGGCCTGCTTTCCTTGCTGATACCTGT
GGGCGTTCTGGGCTTCTTTTGCCCGGCTTCCACTCAGCAAACCTATGCTC
GCCAACGCAGCCCAAGCACACTTACCATGGCGGCCGCGCTGAAGACTGGG
GACCGCGTCGTTGTCATTGGTTCGACGGGTGGGTGCGGCCAGCTGATTGC
CGCCCGGCTAGCCAATGCTGGCAAGTACAAGGTCCGGGCGATTGGGCGGA
GCCAGACCAAGCTGCAGGACGTGCTGGGTAGTAATAGCGGCATCGACTTG
GACGTTGCTGACTCTACCAACCTGGACTCCTTGCTCGCGCCCTTGAGTGA
TGCTGATTGCGTCATTATTGCCACGGGCACCAGCGCATTCCCCTCTCCAC
GCTGGAAGAATGGTAACACCCCCGATGCCGTGGACCGCAAGGGCGTACAA
AACATTTTGCAGGCCCTGACAAGTAAACCACGAAAGCGTCCCGTCAAAAA
AGTGATTTTCCTGAGCTCAATCGGCGTGCTCCGCGCCAAGTCTCTGCCTT
ACTCGATTTTAAATTTGTTTGGGGTTCTGGATGCTAAGAGGGATAGCGAG
GAGTTTTTGAAATCAATGGCAACCACGGAGGACTTTGATTACGTAATTGT
GCGACCCGGGCGATTGGTTGGCGGGCCTTGGACAAATACCGACGTCAGCG
CCCTCCTGAAAGTCGAGGAAGGGACAAGGAAACGAGTGGTGGTCGAGAAG
GGCGATGCGTTAGTAGGTGATGCCGCGCGAATTTCAGTCGCTGAATTGGT
GGCTCGGGCGCTGGATAGACCGGAGGCAGTGGGAAAGGAGTTGTGCTTGG
TGAACGAGGAGGGGAGTCCGTTTTCGGAGGGGGATTGGGAGAGGCTGTTT
GAGGGGTTAAAGGGGTAA
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Synonyms
Publications