NO06G02890.1, NO06G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02890.1
Unique NameNO06G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr6:830105..831445 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:830105..831445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02890.1 vs.
Match: EWM26315.1 (hypothetical protein Naga_100093g12 [Nannochloropsis gaditana])

HSP 1 Score: 333.2 bits (853), Expect = 1.300e-87
Identity = 224/448 (50.00%), Postives = 292/448 (65.18%), Query Frame = 0 
Query:   25 LADTGRSSISTLDVTPT----ASSHPTSTTSALPPLLDQLSMRQPPPSGTSTNTKM-PVTTRIRPLSRSSLESTMDELSEVSGGVSGEDTSK-LSEPENSLRRPFWQLNLLRATITTGGFLTPRLHVPRLVWEQWGAKLNGLTTKATAFEAVLSLLVDRILPLELL----------SSINDPSRKT-----QNEDGEAARRDLAKV---LRIFEEVRAEFDFLQNSLARLFLFIKEVPPTATSSSTSNSSSNGSIAIALASSSSS----SAASSFYLGSGGGMQQVRGFMTSFRNKIQRSAVSAMTAVERIGVALPAKINDEDLLSYASLVSEMCHKAQRLDEWFVSLDCRRRELQEALRREASPSASSTSSSSASSFSSSSLSGKEATQALLHQVEGILVELLHCARFLQEVVIELLLRDVESLVDSYLRKARKVFTRMVWELEEQE 445
            + ++G +S    +  P+    A + PT++ S++P L  QL     P S ++   +  P  T  R LSR SLESTMDEL+EVS G+   +  + L EPENSLRRPFWQL L++ TIT+GGFL P+L+VPRL WEQ+GA++NGL+TK TAFEAVLSLL+   LP++LL          +++  P++       +  D +  R DL K    L+ F E+RAEFD +QNSLAR F F++ V    + +        G  +     SSS       A S  + +GGGMQ +RG M SF  KI + AVSAMTA ER+GV L AKI+D +L SY++LV E+C KAQRLD WF+ LD  RR L++ L R  S S SS  + +ASSFSSSSLS  E  +AL H VE  LVELLHCARFLQ+VV+EL+LRDVESL+DSYLR+ARKVF+RMVWELE+ E
Sbjct:    4 MEESGSASSYFAETAPSPERPACTFPTTSPSSVPRLCSQLGTMDFPVSVSNLCVEEGPARTASRRLSRQSLESTMDELNEVSKGIPDAEVKECLPEPENSLRRPFWQLLLIQRTITSGGFLNPKLYVPRLAWEQYGARVNGLSTKMTAFEAVLSLLLGCPLPVQLLLNAPGSGVGKNNMPAPAKALGTLGLEEVDDQRVREDLLKAQKALQAFRELRAEFDVVQNSLARSFPFLRPVASEDSGARREGIGRRGRSSSRPGDSSSPVPSFGDAFSLAMSAGGGMQHIRGLMASFGRKIHKGAVSAMTAYERMGV-LAAKISDAELQSYSALVCEVCEKAQRLDGWFLYLDDSRRMLEKFLSRHVS-SCSSPQAPAASSFSSSSLSLMETLRALQHCVENSLVELLHCARFLQDVVVELVLRDVESLLDSYLRRARKVFSRMVWELEDSE 449
The following BLAST results are available for this feature:
BLAST of NO06G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26315.11.300e-8750.00hypothetical protein Naga_100093g12 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02890NO06G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02890.1NO06G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02890.1.cds1NO06G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02890.1 ID=NO06G02890.1|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC
GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT
CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA
TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC
ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC
CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG
AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA
CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA
CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG
GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT
TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC
TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG
GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG
CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA
TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC
AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC
CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG
GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG
ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA
TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG
CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG
TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC
TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG
CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG
CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA
CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA
CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG
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protein sequence of NO06G02890.1

>NO06G02890.1-protein ID=NO06G02890.1-protein|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MPDICPSPALKSSKDDSEMTHESRLADTGRSSISTLDVTPTASSHPTSTT
SALPPLLDQLSMRQPPPSGTSTNTKMPVTTRIRPLSRSSLESTMDELSEV
SGGVSGEDTSKLSEPENSLRRPFWQLNLLRATITTGGFLTPRLHVPRLVW
EQWGAKLNGLTTKATAFEAVLSLLVDRILPLELLSSINDPSRKTQNEDGE
AARRDLAKVLRIFEEVRAEFDFLQNSLARLFLFIKEVPPTATSSSTSNSS
SNGSIAIALASSSSSSAASSFYLGSGGGMQQVRGFMTSFRNKIQRSAVSA
MTAVERIGVALPAKINDEDLLSYASLVSEMCHKAQRLDEWFVSLDCRRRE
LQEALRREASPSASSTSSSSASSFSSSSLSGKEATQALLHQVEGILVELL
HCARFLQEVVIELLLRDVESLVDSYLRKARKVFTRMVWELEEQENS*
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mRNA from alignment at chr6:830105..831445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02890.1 ID=NO06G02890.1|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr6:830105..831445- (Nannochloropsis oceanica)
ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC
GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT
CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA
TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC
ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC
CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG
AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA
CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA
CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG
GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT
TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC
TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG
GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG
CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA
TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC
AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC
CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG
GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG
ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA
TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG
CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG
TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC
TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG
CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG
CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA
CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA
CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG
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Coding sequence (CDS) from alignment at chr6:830105..831445-

>NO06G02890.1 ID=NO06G02890.1|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr6:830105..831445- (Nannochloropsis oceanica)
ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC
GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT
CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA
TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC
ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC
CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG
AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA
CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA
CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG
GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT
TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC
TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG
GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG
CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA
TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC
AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC
CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG
GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG
ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA
TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG
CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG
TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC
TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG
CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG
CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA
CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA
CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG
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Synonyms
Publications