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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:820159..821615 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02860.2 vs.
Match: EWM26300.1 (ubiquinone biosynthesis protein coq7 [Nannochloropsis gaditana]) HSP 1 Score: 207.6 bits (527), Expect = 4.800e-50 Identity = 100/148 (67.57%), Postives = 121/148 (81.76%), Query Frame = 0
Query: 100 TSTTVPSNPTLTPHAPPVFDWVALDEEKKMWSDYDNNYEAALVQDLRSNHAGETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLLDMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHY 248
T+ ++ + P+ P P FDW+ L+EEKK+W D+++N EA LVQDLRS+HAGETGAV+IYAGA+AAMK G RFS + AFV H+ATE+EHLA+F+RLLD MKSKLLP WR+SGWCLGFFPTL+GGE ALFLTVEAVETFVE HY
Sbjct: 95 TAASLNARPSSPPQPP--FDWIGLEEEKKIWGDFESNGEAVLVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHY 240
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02860.2 ID=NO06G02860.2|Name=NO06G02860.2|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp
AACAGATTTCACATTAATCTGCTATCAGCGCCTCAACCAAACCAGTCCTC
ATCCACCCCTCAAGCTACACGTCATCGCCAACCCCGGGCTTGCATCAGCC
TAATTTGCCATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGAT
GGAAAGTCAAGCGATAAGACGCCACTTCATGGTCATCGTGCTTGGCGGCA
CCGACAACCGAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAG
CCGGCCCGTGTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCAT
CATGAGCGCCAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCC
TTGTCATTCACGCACCACGTTTCTGCTTCTCCACCAGCACCAGCACCAGT
ACCAGCACAAGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGC
GCCGCCCGTATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATGTGGA
GCGATTATGATAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGT
AACCATGCGGGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGC
TGCTATGAAATTAGGTTCTCCCTCTCGCTTCTCTCCGGGGGCCAGCGCCT
TCGTGGCCGAGCACTACGCCACCGAAGCTGAGCACCTTGCACATTTCGAC
CGTCTGCTGGACATGCAAATGAAATCAAAGTTACTACCTCTCTGGAGAGT
TAGTGGATGGTGTCTGGGATTTTTTCCCACGCTGGTAGGAGGGGAGCCAG
CCCTCTTTCTGACGGTTGAAGCAGTGGAAACCTTTGTGGAGGAGCATTAC
ATGGTATCAAAGGAGGGAGGAAGGGGCAGAGGGAGGGAAACGTCACATGA
ATGCTGCCCATACTGATTGTTGTTCCCTCCTTTTCCTTCGTTTAAAAAAA
ACACATCTATCTATAGGAGCAAATCTTTCCCTTGGAATGCAGCGGTCGAT
ACCCAGAGCTTTTGAAATTATTGAGGCATTGCTGTGAGGAGGAGGTGCAT
CACAAGGAGGACGCAGCGGCAAGGTGGATTTCAGGGGGAGGGGGAGGAAA
GGGGGGAGCAAGGCCCTGGTATGTACGAGTTTGGGCGAAACTGGTTGGGT
GGGGGAGTAAGGGCGCGGTGGCGGTGTGTAAAAGAATATGAATATCTAGG
CCAATAGATGGGCGGGTAAATTGAGCATGTGGCTGCGTGGTAGAGATTGG
CTGATTGTAGAAAGATACGAAAGAATGAATCACGGTGTGACAAA back to topprotein sequence of NO06G02860.2 >NO06G02860.2-protein ID=NO06G02860.2-protein|Name=NO06G02860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MALPHALSVFQRGMESQAIRRHFMVIVLGGTDNRMPPRLSPRHLMTEPAR
VRPSSLTTTAATRIMSAKFADASHASSLHALVIHAPRFCFSTSTSTSTST
STTVPSNPTLTPHAPPVFDWVALDEEKKMWSDYDNNYEAALVQDLRSNHA
GETGAVWIYAGAKAAMKLGSPSRFSPGASAFVAEHYATEAEHLAHFDRLL
DMQMKSKLLPLWRVSGWCLGFFPTLVGGEPALFLTVEAVETFVEEHYMVS
KEGGRGRGRETSHECCPY* back to topmRNA from alignment at chr6:820159..821615- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02860.2 ID=NO06G02860.2|Name=NO06G02860.2|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at chr6:820159..821615- (Nannochloropsis oceanica)
AACAGATTTCACATTAATCTGCTATCAGCGCCTCAACCAAACCAGTCCTC
ATCCACCCCTCAAGCTACACGTCATCGCCAACCCCGGGCTTGCATCAGCC
TAATTTGCCATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGAT
GGAAAGTCAAGCGATAAGACGCCACTTCATGGTCATCGTGCTTGGCGGCA
CCGACAACCGAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAG
CCGGCCCGTGTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCAT
CATGAGCGCCAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCC
TTGTCATTCACGCACCACGTTTCTGCTTCTCCACCAGCACCAGCACCAGT
ACCAGCACAAGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGC
GCCGCCCGTATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATGTGGA
GCGATTATGATAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGT
AACCATGCGGGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGT
ATGTATCTTACACATGAGAGAAGACAGTATCACTTTTTTACGGAGGGAAT
GAAGCCAATTTGCGTGCCTATTTTTTGCATTCTCTTTATTTTCCTTTTTC
TCTAATCCATAAACATTCTCTCTCTCTTTCTTTCTCACGCACGACCCACC
CACCCACATAGGCTGCTATGAAATTAGGTTCTCCCTCTCGCTTCTCTCCG
GGGGCCAGCGCCTTCGTGGCCGAGCACTACGCCACCGAAGCTGAGCACCT
TGCACATTTCGACCGTCTGCTGGACATGCAAATGAAATCAAAGTTACTAC
CTCTCTGGAGAGTTAGTGGATGGTGTCTGGGATTTTTTCCCACGCTGGTA
GGAGGGGAGCCAGCCCTCTTTCTGACGGTTGAAGCAGTGGAAACCTTTGT
GGAGGAGCATTACATGGTATCAAAGGAGGGAGGAAGGGGCAGAGGGAGGG
AAACGTCACATGAATGCTGCCCATACTGATTGTTGTTCCCTCCTTTTCCT
TCGTTTAAAAAAAACACATCTATCTATAGGAGCAAATCTTTCCCTTGGAA
TGCAGCGGTCGATACCCAGAGCTTTTGAAATTATTGAGGCATTGCTGTGA
GGAGGAGGTGCATCACAAGGAGGACGCAGCGGCAAGGTGGATTTCAGGGG
GAGGGGGAGGAAAGGGGGGAGCAAGGCCCTGGTATGTACGAGTTTGGGCG
AAACTGGTTGGGTGGGGGAGTAAGGGCGCGGTGGCGGTGTGTAAAAGAAT
ATGAATATCTAGGCCAATAGATGGGCGGGTAAATTGAGCATGTGGCTGCG
TGGTAGAGATTGGCTGATTGTAGAAAGATACGAAAGAATGAATCACGGTG
TGACAAA back to topCoding sequence (CDS) from alignment at chr6:820159..821615- >NO06G02860.2 ID=NO06G02860.2|Name=NO06G02860.2|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr6:820159..821615- (Nannochloropsis oceanica)
ATGGCCCTGCCCCATGCGCTGTCTGTTTTCCAAAGAGGGATGGAAAGTCA
AGCGATAAGACGCCACTTCATGGTCATCGTGCTTGGCGGCACCGACAACC
GAATGCCTCCTCGTCTCAGCCCGAGGCATCTCATGACGGAGCCGGCCCGT
GTTCGGCCCAGCAGCCTCACTACCACCGCAGCAACACGCATCATGAGCGC
CAAGTTCGCTGACGCCAGTCACGCCTCTTCCCTCCATGCCCTTGTCATTC
ACGCACCACGTTTCTGCTTCTCCACCAGCACCAGCACCAGTACCAGCACA
AGTACCACCGTCCCCTCAAACCCAACCCTTACTCCCCACGCGCCGCCCGT
ATTTGATTGGGTCGCTTTGGACGAAGAGAAAAAGATGTGGAGCGATTATG
ATAATAATTATGAGGCTGCGCTTGTGCAAGACCTGAGGAGTAACCATGCG
GGTGAGACAGGTGCGGTCTGGATCTATGCTGGTGCCAAGGCTGCTATGAA
ATTAGGTTCTCCCTCTCGCTTCTCTCCGGGGGCCAGCGCCTTCGTGGCCG
AGCACTACGCCACCGAAGCTGAGCACCTTGCACATTTCGACCGTCTGCTG
GACATGCAAATGAAATCAAAGTTACTACCTCTCTGGAGAGTTAGTGGATG
GTGTCTGGGATTTTTTCCCACGCTGGTAGGAGGGGAGCCAGCCCTCTTTC
TGACGGTTGAAGCAGTGGAAACCTTTGTGGAGGAGCATTACATGGTATCA
AAGGAGGGAGGAAGGGGCAGAGGGAGGGAAACGTCACATGAATGCTGCCC
ATACTGA back to top
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